g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: V7CZJ5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G171100g PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.289e-23 Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 3 Query: 24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 D SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++ PVITSTVW EL KEN+EFFE Y+R+R +RA++ E + RIQ Sbjct: 3 DSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANINPVITSTVWKELAKENQEFFEVYSRSRAERASERETKERIQ 81
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A068TVE2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029785001 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.091e-23 Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNR--DQRATDMEKRGRIQ 260 M DSSASYIHMV HLIEECLIFNMSKEECMEALSKHA++ PVIT+TVWNELEKENKEFFEAY+R+R + R ++ E IQ Sbjct: 1 MGDSSASYIHMVQHLIEECLIFNMSKEECMEALSKHANITPVITATVWNELEKENKEFFEAYSRSRKKEDRMSETETNAMIQ 82
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A068UDM6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_22 OS=Coffea canephora GN=GSCOC_T00023583001 PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.017e-22 Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 3 Query: 21 MDDSSAS--YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRV 269 M DSS+ YIH++ HLIEEC++F+MSKEECMEAL KHA++KPVIT+TVW ELEKENKEFFEAYT++R++RA++ E R RIQ R+ Sbjct: 1 MADSSSPHEYIHLIQHLIEECILFHMSKEECMEALFKHANIKPVITATVWKELEKENKEFFEAYTKDREERASETETRQRIQKRM 85
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067KUQ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09017 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.608e-22 Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 3 Query: 21 MDDSSA--SYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRAT 233 M DSSA SYIH VHHLIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFE YT+ R+ RAT Sbjct: 1 MGDSSAAASYIHTVHHLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEGYTKRREDRAT 73
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1LYW4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.416e-22 Identity = 53/78 (67.95%), Postives = 69/78 (88.46%), Query Frame = 3 Query: 24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRI 257 D SSA+YIH+VH LIEEC++F+MS+EECMEALSKHA++KPVITSTVW LEKENKEFF+AY++++ +RA+ E R +I Sbjct: 3 DSSSAAYIHLVHRLIEECILFHMSQEECMEALSKHANIKPVITSTVWKGLEKENKEFFKAYSKSKAERASKTEVRQKI 80 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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