g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002516
Unique Nameg.arboreum_cottongen_reftransV1_0002516
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length822
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0002516:1..822 .
Chr12:69797659..69798667 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: V7CZJ5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G171100g PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.289e-23
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 3
Query:   24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            D SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++ PVITSTVW EL KEN+EFFE Y+R+R +RA++ E + RIQ
Sbjct:    3 DSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANINPVITSTVWKELAKENQEFFEVYSRSRAERASERETKERIQ 81          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A068TVE2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029785001 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.091e-23
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNR--DQRATDMEKRGRIQ 260
            M DSSASYIHMV HLIEECLIFNMSKEECMEALSKHA++ PVIT+TVWNELEKENKEFFEAY+R+R  + R ++ E    IQ
Sbjct:    1 MGDSSASYIHMVQHLIEECLIFNMSKEECMEALSKHANITPVITATVWNELEKENKEFFEAYSRSRKKEDRMSETETNAMIQ 82          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A068UDM6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_22 OS=Coffea canephora GN=GSCOC_T00023583001 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.017e-22
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 3
Query:   21 MDDSSAS--YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRV 269
            M DSS+   YIH++ HLIEEC++F+MSKEECMEAL KHA++KPVIT+TVW ELEKENKEFFEAYT++R++RA++ E R RIQ R+
Sbjct:    1 MADSSSPHEYIHLIQHLIEECILFHMSKEECMEALFKHANIKPVITATVWKELEKENKEFFEAYTKDREERASETETRQRIQKRM 85          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067KUQ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09017 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.608e-22
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 3
Query:   21 MDDSSA--SYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRAT 233
            M DSSA  SYIH VHHLIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFE YT+ R+ RAT
Sbjct:    1 MGDSSAAASYIHTVHHLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEGYTKRREDRAT 73          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1LYW4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.416e-22
Identity = 53/78 (67.95%), Postives = 69/78 (88.46%), Query Frame = 3
Query:   24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRI 257
            D SSA+YIH+VH LIEEC++F+MS+EECMEALSKHA++KPVITSTVW  LEKENKEFF+AY++++ +RA+  E R +I
Sbjct:    3 DSSSAAYIHLVHRLIEECILFHMSQEECMEALSKHANIKPVITSTVWKGLEKENKEFFKAYSKSKAERASKTEVRQKI 80          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7CZJ5_PHAVU4.289e-2369.62Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A068TVE2_COFCA8.091e-2375.61Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A068UDM6_COFCA1.017e-2268.24Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A067KUQ6_JATCU1.608e-2280.82Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
I1LYW4_SOYBN5.416e-2267.95Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMTIGR01589TIGR01589coord: 15..69
e-value: 1.0E-25
score: 87.5
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 18..69
e-value: 1.3E-26
score: 92.5
NoneNo IPR availablePANTHERPTHR31871:SF3SUBFAMILY NOT NAMEDcoord: 1..86
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..86

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bp
ATTTGTTTCATTTCATGAACATGGATGACTCTTCTGCTTCATACATCCAT
ATGGTGCATCATCTGATAGAAGAGTGTTTGATATTCAACATGAGCAAAGA
AGAGTGCATGGAAGCTTTGTCTAAGCATGCAAGTGTTAAACCAGTCATTA
CTTCAACAGTTTGGAATGAGTTGGAAAAAGAGAATAAGGAGTTCTTTGAG
GCTTACACAAGAAACAGAGACCAAAGAGCTACAGACATGGAGAAAAGGGG
AAGGATCCAGTTCAGGGTTAATGCATACATGAGGGAGAAAGGAAATAAGG
ACTAATTTAATGCATGATCTATTAGCTCAAAATCAAGATTTAGACTTGTT
TAAGTAGTTCTTGATCCATAGTTGTAGAGTTTGTATAAGCAATAGCCTCC
ATAGCAGAGGTGGTCCAAAATTTTAGTTCCTACCTGGTGTTGAGCCAACG
GAATCTAAGGTAAAACCCTCACCGCTCGCTGTCAGGTCAGCTTTGTTAGA
ACTTGCCTTTAGTAAAAAAAAAAGAACAAAGTGTATATATTGTAATAAAA
TTCATTACATTTGCAAAGGCGATTTAACTTTTTCTTTTTGGGGGTTCTGT
TTTGGGACCATTTTCAATTGTCACAGTCTGAAGCTTTTTCTGAAAGGAGG
GCTCAATTTATTGTCTTTTTTTTTTTAATTTGCTGTGATTCGGATGTAAA
TGATGCGAAGTATGCGGTTGAGAAAGCCAAGCTGTGGAACAAAAAAGAAA
AAGAAAGCCAAGTTGAAGAAGTCATCCACCATGGGTCAAAGATGGTAAAA
TACATCTCTTCTTGGGTTGAGT
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln