g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: M5W4Z8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018485mg PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.965e-28 Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDME-KRGRIQ 260 M DSSASYIHMVHHLIEEC+IFNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYT+NR+ RA++ME + RI+ Sbjct: 1 MGDSSASYIHMVHHLIEECIIFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTKNRETRASEMEITKQRIE 81
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0NZT5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05478 PE=4 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.434e-27 Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 3 Query: 42 YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302 YIHMVH LIEECL+F MSKEECMEALSKHA++KPVITSTVWNELEKENKEFFEAYTR +RAT++EKR RIQ ++AY+R+ D Sbjct: 14 YIHMVHRLIEECLVFKMSKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYTRGSHERATEIEKRQRIQRSLHAYIRDNNGND 100
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2RXY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G176200 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.368e-27 Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 3 Query: 42 YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302 YIHMVH LIEECL+F MSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR +RAT++EKR RIQ ++AY+R+ D Sbjct: 15 YIHMVHRLIEECLVFKMSKEECMEALSKHANIKPVITSTVWIELEKENKEFFEAYTRGSHERATEIEKRQRIQRSLHAYIRDNNGHD 101
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: B7FN40_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g100335 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.244e-26 Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 M+DSSA+YIH+VH LIEEC++FNMSKEECM+ALSKHA++KPVITSTVW ELEKENKEFFEAY RNR +RA++ E R RI+ Sbjct: 1 MEDSSAAYIHLVHRLIEECILFNMSKEECMDALSKHANIKPVITSTVWKELEKENKEFFEAYLRNRAERASETEMRQRIR 80
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1NA13_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.641e-25 Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 3 Query: 15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREK 290 M SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R +RA++ E R RIQ V+ +E+ Sbjct: 1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRAERASERETRQRIQSVVSDSSKER 92
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: D7TQF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02650 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.064e-24 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 M +SSASYIHMV LIEEC+IFNMS+EECMEALSKHA +KPVITSTVW ELEKENKEFFE+Y ++R+ R +DME R Q Sbjct: 1 MGESSASYIHMVQRLIEECIIFNMSREECMEALSKHADIKPVITSTVWKELEKENKEFFESYAKSREARGSDMETRENFQ 80
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: B9HC97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23000g PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.924e-24 Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRA 230 M DSSASYIHMVHHLIEEC+IFNMSKEECMEALSKHA +KPVITSTVW ELEKENKEFFEAY + R ++A Sbjct: 1 MGDSSASYIHMVHHLIEECIIFNMSKEECMEALSKHADIKPVITSTVWKELEKENKEFFEAYEKRRGEKA 70
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1JPE9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.261e-24 Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 3 Query: 15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 M SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R ++A++ E R RIQ Sbjct: 1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRVEKASERETRQRIQ 82
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B2PJ74_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016540 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.261e-24 Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 3 Query: 15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 M SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R ++A++ E R RIQ Sbjct: 1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRVEKASERETRQRIQ 82
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I3SXL0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.993e-24 Identity = 60/80 (75.00%), Postives = 72/80 (90.00%), Query Frame = 3 Query: 24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQ-RATDMEKRGRIQ 260 D SSA+YIH+VH LIEEC++FNMSKEECMEALSKHA+++PVITSTVW ELEKENKEFFEAY+R+R + RA++ E R RIQ Sbjct: 3 DSSSAAYIHLVHRLIEECILFNMSKEECMEALSKHANIQPVITSTVWKELEKENKEFFEAYSRSRAEIRASETETRQRIQ 82 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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