g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002516
Unique Nameg.arboreum_cottongen_reftransV1_0002516
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length822
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0002516:1..822 .
Chr12:69797659..69798667 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: M5W4Z8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018485mg PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.965e-28
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDME-KRGRIQ 260
            M DSSASYIHMVHHLIEEC+IFNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYT+NR+ RA++ME  + RI+
Sbjct:    1 MGDSSASYIHMVHHLIEECIIFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTKNRETRASEMEITKQRIE 81          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0NZT5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05478 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.434e-27
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 3
Query:   42 YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302
            YIHMVH LIEECL+F MSKEECMEALSKHA++KPVITSTVWNELEKENKEFFEAYTR   +RAT++EKR RIQ  ++AY+R+    D
Sbjct:   14 YIHMVHRLIEECLVFKMSKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYTRGSHERATEIEKRQRIQRSLHAYIRDNNGND 100          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2RXY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G176200 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.368e-27
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 3
Query:   42 YIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302
            YIHMVH LIEECL+F MSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR   +RAT++EKR RIQ  ++AY+R+    D
Sbjct:   15 YIHMVHRLIEECLVFKMSKEECMEALSKHANIKPVITSTVWIELEKENKEFFEAYTRGSHERATEIEKRQRIQRSLHAYIRDNNGHD 101          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: B7FN40_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g100335 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.244e-26
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            M+DSSA+YIH+VH LIEEC++FNMSKEECM+ALSKHA++KPVITSTVW ELEKENKEFFEAY RNR +RA++ E R RI+
Sbjct:    1 MEDSSAAYIHLVHRLIEECILFNMSKEECMDALSKHANIKPVITSTVWKELEKENKEFFEAYLRNRAERASETEMRQRIR 80          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1NA13_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.641e-25
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 3
Query:   15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREK 290
            M    SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R +RA++ E R RIQ  V+   +E+
Sbjct:    1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRAERASERETRQRIQSVVSDSSKER 92          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: D7TQF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02650 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.064e-24
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            M +SSASYIHMV  LIEEC+IFNMS+EECMEALSKHA +KPVITSTVW ELEKENKEFFE+Y ++R+ R +DME R   Q
Sbjct:    1 MGESSASYIHMVQRLIEECIIFNMSREECMEALSKHADIKPVITSTVWKELEKENKEFFESYAKSREARGSDMETRENFQ 80          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: B9HC97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23000g PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.924e-24
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRA 230
            M DSSASYIHMVHHLIEEC+IFNMSKEECMEALSKHA +KPVITSTVW ELEKENKEFFEAY + R ++A
Sbjct:    1 MGDSSASYIHMVHHLIEECIIFNMSKEECMEALSKHADIKPVITSTVWKELEKENKEFFEAYEKRRGEKA 70          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I1JPE9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.261e-24
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 3
Query:   15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            M    SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R ++A++ E R RIQ
Sbjct:    1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRVEKASERETRQRIQ 82          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B2PJ74_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016540 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.261e-24
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 3
Query:   15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            M    SSA+YI +VH LIEEC++FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAYTR+R ++A++ E R RIQ
Sbjct:    1 MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRVEKASERETRQRIQ 82          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: I3SXL0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.993e-24
Identity = 60/80 (75.00%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   24 DDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQ-RATDMEKRGRIQ 260
            D SSA+YIH+VH LIEEC++FNMSKEECMEALSKHA+++PVITSTVW ELEKENKEFFEAY+R+R + RA++ E R RIQ
Sbjct:    3 DSSSAAYIHLVHRLIEECILFNMSKEECMEALSKHANIQPVITSTVWKELEKENKEFFEAYSRSRAEIRASETETRQRIQ 82          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5W4Z8_PRUPE4.965e-2881.48Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0B0NZT5_GOSAR5.434e-2774.71Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2RXY9_GOSRA8.368e-2773.56Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B7FN40_MEDTR3.244e-2676.25Uncharacterized protein OS=Medicago truncatula GN=... [more]
I1NA13_SOYBN2.641e-2568.48Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
D7TQF0_VITVI2.064e-2473.75Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HC97_POPTR2.924e-2484.29Uncharacterized protein OS=Populus trichocarpa GN=... [more]
I1JPE9_SOYBN3.261e-2473.17Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PJ74_GLYSO3.261e-2473.17Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
I3SXL0_LOTJA4.993e-2475.00Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMTIGR01589TIGR01589coord: 15..69
e-value: 1.0E-25
score: 87.5
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 18..69
e-value: 1.3E-26
score: 92.5
NoneNo IPR availablePANTHERPTHR31871:SF3SUBFAMILY NOT NAMEDcoord: 1..86
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..86

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bp
ATTTGTTTCATTTCATGAACATGGATGACTCTTCTGCTTCATACATCCAT
ATGGTGCATCATCTGATAGAAGAGTGTTTGATATTCAACATGAGCAAAGA
AGAGTGCATGGAAGCTTTGTCTAAGCATGCAAGTGTTAAACCAGTCATTA
CTTCAACAGTTTGGAATGAGTTGGAAAAAGAGAATAAGGAGTTCTTTGAG
GCTTACACAAGAAACAGAGACCAAAGAGCTACAGACATGGAGAAAAGGGG
AAGGATCCAGTTCAGGGTTAATGCATACATGAGGGAGAAAGGAAATAAGG
ACTAATTTAATGCATGATCTATTAGCTCAAAATCAAGATTTAGACTTGTT
TAAGTAGTTCTTGATCCATAGTTGTAGAGTTTGTATAAGCAATAGCCTCC
ATAGCAGAGGTGGTCCAAAATTTTAGTTCCTACCTGGTGTTGAGCCAACG
GAATCTAAGGTAAAACCCTCACCGCTCGCTGTCAGGTCAGCTTTGTTAGA
ACTTGCCTTTAGTAAAAAAAAAAGAACAAAGTGTATATATTGTAATAAAA
TTCATTACATTTGCAAAGGCGATTTAACTTTTTCTTTTTGGGGGTTCTGT
TTTGGGACCATTTTCAATTGTCACAGTCTGAAGCTTTTTCTGAAAGGAGG
GCTCAATTTATTGTCTTTTTTTTTTTAATTTGCTGTGATTCGGATGTAAA
TGATGCGAAGTATGCGGTTGAGAAAGCCAAGCTGTGGAACAAAAAAGAAA
AAGAAAGCCAAGTTGAAGAAGTCATCCACCATGGGTCAAAGATGGTAAAA
TACATCTCTTCTTGGGTTGAGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln