g.arboreum_cottongen_reftransV1_0000340, g.arboreum_cottongen_reftransV1_0000340 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000340
Unique Nameg.arboreum_cottongen_reftransV1_0000340
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold940supercontigg.arboreum_cottongen_reftransV1_0000340:1..362 .
scaffold940:280630..281539 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A078JHE9_BRANA (BnaC07g48790D protein OS=Brassica napus GN=BnaC07g48790D PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.644e-69
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKS 340
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LA++FDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+
Sbjct:  441 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLAIIFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKT 553
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BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0D3DA29_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 9.245e-69
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKS 340
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LA++FDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+
Sbjct:  441 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLAIIFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKT 553
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BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A067FMJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008637mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.721e-68
Identity = 101/115 (87.83%), Postives = 110/115 (95.65%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEA 346
            L P+K FSSRMAA+DYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LALLFDNPNIGWR+FKRQML+MRSHSD+KG+ELKRP+DS YTFPCPDCMCR NKS A
Sbjct:  443 LAPFKNFSSRMAAVDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPNIGWRSFKRQMLSMRSHSDSKGYELKRPSDSPYTFPCPDCMCRANKSNA 557
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BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A078HRP4_BRANA (BnaA02g26850D protein OS=Brassica napus GN=BnaA02g26850D PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.477e-68
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LA+LFDNPNIGWR+FKR MLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R N++    S
Sbjct:  444 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLAILFDNPNIGWRSFKRHMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRKNRTTTPDS 561
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: M4ED02_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra026662 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.477e-68
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LA+LFDNPNIGWR+FKR MLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R N++    S
Sbjct:  444 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLAILFDNPNIGWRSFKRHMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRKNRTTTPDS 561
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.336e-10
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:   35 AAIDYTVCLHSEVFLTTQGG--NFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRT-FKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAA 349
            +A+DY VCL S++F+ T  G  NF + L+GHR  LY G   TIRPD++ LA +F     G R  F+  +  +   ++  G   +   +S YT   P+C C+ N  +++
Sbjct:  377 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHR--LYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQMNPKKSS 482
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078JHE9_BRANA7.644e-6989.38BnaC07g48790D protein OS=Brassica napus GN=BnaC07g... [more]
A0A0D3DA29_BRAOL9.245e-6989.38Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A067FMJ6_CITSI1.721e-6887.83Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A078HRP4_BRANA2.477e-6886.44BnaA02g26850D protein OS=Brassica napus GN=BnaA02g... [more]
M4ED02_BRARP2.477e-6886.44Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH2.336e-1035.19Uncharacterized protein At1g04910 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019378GDP-fucose protein O-fucosyltransferasePFAMPF10250O-FucTcoord: 2..34
e-value: 2.7E-7
score: 30.5
NoneNo IPR availablePANTHERPTHR31288FAMILY NOT NAMEDcoord: 1..110
NoneNo IPR availablePANTHERPTHR31288:SF10O-FUCOSYLTRANSFERASE FAMILY PROTEINcoord: 1..110

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000340 ID=g.arboreum_cottongen_reftransV1_0000340; Name=g.arboreum_cottongen_reftransV1_0000340; organism=Gossypium arboreum; type=contig; length=362bp
ACTTGTTCCATATAAGAGATTTTCATCCAGGATGGCTGCCATAGACTATA
CTGTTTGCCTTCATAGCGAGGTATTTTTGACTACTCAAGGTGGGAATTTT
CCTCATTTTCTGATGGGCCACAGGAGGTACCTGTACGGCGGACATTCCAA
GACAATTCGACCAGACAAGCGAAGGTTGGCACTGCTATTTGATAACCCTA
ATATTGGATGGAGAACTTTCAAGCGACAAATGCTGAATATGAGGTCTCAT
AGTGACACAAAGGGGTTTGAGCTCAAAAGGCCCAATGATTCGATATATAC
CTTCCCATGCCCTGATTGCATGTGTCGTACAAACAAATCAGAAGCAGCAA
GATCATCATCGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase