g.arboreum_cottongen_reftransV1_0000340, g.arboreum_cottongen_reftransV1_0000340 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0000340
Unique Name	g.arboreum_cottongen_reftransV1_0000340
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	362

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold940	supercontig	g.arboreum_cottongen_reftransV1_0000340:1..362 . scaffold940:280630..281539 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A087GU11_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G004000 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.069e-69
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LA+LFDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+    S
Sbjct:  442 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLAILFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKTTTPDS 559

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0D2T1P5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G166900 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.006e-69
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LALLFDNPNIGW++FKRQMLNMRSHSD+KGFELK+  DSIYTFPCPDCMCRTNKS    SSS
Sbjct:  440 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLALLFDNPNIGWKSFKRQMLNMRSHSDSKGFELKKLVDSIYTFPCPDCMCRTNKSTNPGSSS 559

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: B9SJ61_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0843760 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.806e-69
Identity = 101/120 (84.17%), Postives = 114/120 (95.00%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L PYK +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRR+LYGGHSKTIRPDKR+LALLFDNPN+GW++FKR MLNMRSHSD+KGFELKRPNDSIY+FPCPDCMCR NK+E+  S++
Sbjct:  451 LAPYKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRFLYGGHSKTIRPDKRKLALLFDNPNLGWKSFKRHMLNMRSHSDSKGFELKRPNDSIYSFPCPDCMCRMNKTESRSSAT 570

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0B2PKF8_GLYSO (DUF246 domain-containing protein OS=Glycine soja GN=glysoja_023682 PE=4 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.856e-69
Identity = 98/120 (81.67%), Postives = 114/120 (95.00%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P+K +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFL+GHRRYLYGGHSKTI+PDKR+LALLFDNPNIGW++ KRQ+L+MRSHSD+KG ELKRPNDSIY+FPCPDCMCR N+++ +RSSS
Sbjct:  328 LAPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRYLYGGHSKTIKPDKRKLALLFDNPNIGWKSLKRQLLSMRSHSDSKGVELKRPNDSIYSFPCPDCMCRANRTDDSRSSS 447

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: Q9ZVF7_ARATH (O-fucosyltransferase family protein OS=Arabidopsis thaliana GN=At2g01480 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.681e-69
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRY++GGHSKTIRPDKR+LA+LFDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+    S
Sbjct:  444 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYMFGGHSKTIRPDKRKLAILFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKTTTPES 561

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: R0HF67_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016938mg PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.147e-69
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LA+LFDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+    S
Sbjct:  444 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLAILFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKTTTTDS 561

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: M5XYL8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003622mg PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.533e-69
Identity = 101/120 (84.17%), Postives = 112/120 (93.33%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P+K FSSRMAA DYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LALLFDNP IGW+TFKRQ+L MR+H D+KGFELKRPNDSIYTFPCPDCMCR+NK+E +R+ S
Sbjct:  440 LAPFKNFSSRMAATDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPKIGWKTFKRQLLGMRTHGDSKGFELKRPNDSIYTFPCPDCMCRSNKTEDSRALS 559

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: V4LJQ1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000838mg PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 6.724e-69
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARS 355
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LA+LFDNPNIGWR+FKRQMLNMRSHSD+KG ELKRPNDSIYTFPCPDCM R NK+    S
Sbjct:  442 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLAILFDNPNIGWRSFKRQMLNMRSHSDSKGIELKRPNDSIYTFPCPDCMSRRNKTTTPDS 559

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A078FX11_BRANA (BnaA06g34880D protein OS=Brassica napus GN=BnaA06g34880D PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.328e-69
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKS 340
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LA++FDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+
Sbjct:  441 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLAIIFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKT 553

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: M4E7X6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra024882 PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.328e-69
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 2

Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKS 340
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LA++FDNPNIGWR+FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCM R NK+
Sbjct:  441 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLAIIFDNPNIGWRSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMSRRNKT 553

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.336e-10
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2

Query:   35 AAIDYTVCLHSEVFLTTQGG--NFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRT-FKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAA 349
            +A+DY VCL S++F+ T  G  NF + L+GHR  LY G   TIRPD++ LA +F     G R  F+  +  +   ++  G   +   +S YT   P+C C+ N  +++
Sbjct:  377 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHR--LYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQMNPKKSS 482

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A087GU11_ARAAL	1.069e-69	88.14	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]
A0A0D2T1P5_GOSRA	2.006e-69	87.50	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9SJ61_RICCO	2.806e-69	84.17	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A0B2PKF8_GLYSO	3.856e-69	81.67	DUF246 domain-containing protein OS=Glycine soja G...	[more]
Q9ZVF7_ARATH	4.681e-69	86.44	O-fucosyltransferase family protein OS=Arabidopsis...	[more]
R0HF67_9BRAS	5.147e-69	87.29	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
M5XYL8_PRUPE	5.533e-69	84.17	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
V4LJQ1_EUTSA	6.724e-69	87.29	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
A0A078FX11_BRANA	7.328e-69	89.38	BnaA06g34880D protein OS=Brassica napus GN=BnaA06g...	[more]
M4E7X6_BRARP	7.328e-69	89.38	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
Y1491_ARATH	2.336e-10	35.19	Uncharacterized protein At1g04910 OS=Arabidopsis t...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019378	GDP-fucose protein O-fucosyltransferase	PFAM	PF10250	O-FucT	coord: 2..34 e-value: 2.7E-7 score: 30.5
None	No IPR available	PANTHER	PTHR31288	FAMILY NOT NAMED	coord: 1..110
None	No IPR available	PANTHER	PTHR31288:SF10	O-FUCOSYLTRANSFERASE FAMILY PROTEIN	coord: 1..110

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0000340 ID=g.arboreum_cottongen_reftransV1_0000340; Name=g.arboreum_cottongen_reftransV1_0000340; organism=Gossypium arboreum; type=contig; length=362bp
ACTTGTTCCATATAAGAGATTTTCATCCAGGATGGCTGCCATAGACTATA
CTGTTTGCCTTCATAGCGAGGTATTTTTGACTACTCAAGGTGGGAATTTT
CCTCATTTTCTGATGGGCCACAGGAGGTACCTGTACGGCGGACATTCCAA
GACAATTCGACCAGACAAGCGAAGGTTGGCACTGCTATTTGATAACCCTA
ATATTGGATGGAGAACTTTCAAGCGACAAATGCTGAATATGAGGTCTCAT
AGTGACACAAAGGGGTTTGAGCTCAAAAGGCCCAATGATTCGATATATAC
CTTCCCATGCCCTGATTGCATGTGTCGTACAAACAAATCAGAAGCAGCAA
GATCATCATCGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019378	GDP-Fuc_O-FucTrfase

Search form

g.arboreum_cottongen_reftransV1_0000340, g.arboreum_cottongen_reftransV1_0000340 (contig) Gossypium arboreum

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