g.arboreum_cottongen_reftransV1_0019448, g.arboreum_cottongen_reftransV1_0019448 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019448
Unique Nameg.arboreum_cottongen_reftransV1_0019448
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1043
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0019448:1..1043 .
Chr12:138718000..138721119 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A068TUA8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029583001 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.938e-49
Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = -2
Query:  629 LNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1036
            LN     R RYKEQG AGSLFCIVCG+S SKEF  TQ L TH FMS + GLRA+HLGLHKAICVLLGW ++   D IT+ PQ +  +EALAQKEDL+LWPP+V+IH+ISM+  +P+ QKV   E V+ FLRG+  +
Sbjct:  471 LNEKLGTRNRYKEQGRAGSLFCIVCGKSLSKEFKATQGLATHCFMSKKAGLRAQHLGLHKAICVLLGWSTVVGADVITFTPQAISSSEALAQKEDLILWPPVVIIHSISMSAGHPKGQKVFTEEAVEDFLRGKGFS 606          

HSP 2 Score: 104.76 bits (260), Expect = 2.996e-21
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  130 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTS--------KNKGDEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVK 462
            KGF  GKI VC G  A+ ++MVVKFLGTF GL  AE+LHKYF+++K GR +F           NK  E M +  + EE +L GYM +SEDLDK+DF  ++   V+SK+EI D+A +P+K
Sbjct:  603 KGFSVGKIKVCQGMSAN-NIMVVKFLGTFPGLRDAEKLHKYFLDDKHGRIDFEQMSSVKGKDNNKKKERM-QADKFEEYVLCGYMAISEDLDKVDFETKRKCSVRSKREIEDIAEEPLK 719          
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: I3RZF0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.769e-48
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = -2
Query:  638 MDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 937
            MDTQRLVTHAFMSH+ GLRA+HL LHKAICV++GWD++ P DT+TWVPQVLP AEALAQKEDL+LWPPI +IHNISM ++NPQ  KVV +E ++AFLRG+
Sbjct:    1 MDTQRLVTHAFMSHKTGLRAKHLALHKAICVMMGWDTVVPQDTVTWVPQVLPHAEALAQKEDLILWPPIAIIHNISMYDDNPQNWKVVSMETIEAFLRGK 100          

HSP 2 Score: 138.658 bits (348), Expect = 3.099e-35
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  121 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKG---DEEMGKPGEGE--EQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDE 462
            KGFV G++ +CLG+PADQSV++VKFLGTF GL  AERLHKY  EN RGR E+     G      +G+  +GE  E +LYGY+GV++DLDKLDF+++ WS+VKS+KEI DL   PVKTD+
Sbjct:  100 KGFVTGRVKLCLGKPADQSVILVKFLGTFGGLGDAERLHKYLSENNRGRAEYEKVKSGSIKSSNIGETDQGEQVESILYGYVGVADDLDKLDFNSKSWSLVKSRKEIDDLEKAPVKTDK 218          
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: M1BPX7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019495 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.325e-42
Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = -2
Query:  629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042
            +KLN + + ++RYKEQG AG LFCIVC  S  KEF DT+ L  H +MS +V L+A+HLGLHKAICVL+GW+S APPD   W+P  +P   ALAQKEDL+LWPP+VVIHN S        QKV   E V+ FLRG+  +
Sbjct:  642 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNALAQKEDLILWPPVVVIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 779          

HSP 2 Score: 121.324 bits (303), Expect = 1.719e-26
Identity = 61/118 (51.69%), Postives = 86/118 (72.88%), Query Frame = -3
Query:  124 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTD 462
            KGF GG++ VC+G+P + SV++VKFLGT  G+  AE+LH YF+E +RGRK+F    ++K KG D    K G+ EE  LYGYMG++EDLDK+D   ++ S++KSKKEI D  + PVK++
Sbjct:  776 KGFSGGRMKVCMGKPGNGSVLLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTKRRSLIKSKKEIRDFVDAPVKSE 893          
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: M1BPX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019495 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.455e-41
Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = -2
Query:  629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042
            +KLN + + ++RYKEQG AG LFCIVC  S  KEF DT+ L  H +MS +V L+A+HLGLHKAICVL+GW+S APPD   W+P  +P   ALAQKEDL+LWPP+VVIHN S        QKV   E V+ FLRG+  +
Sbjct:  897 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNALAQKEDLILWPPVVVIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 1034          

HSP 2 Score: 121.324 bits (303), Expect = 2.230e-26
Identity = 61/118 (51.69%), Postives = 86/118 (72.88%), Query Frame = -3
Query:  124 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTD 462
            KGF GG++ VC+G+P + SV++VKFLGT  G+  AE+LH YF+E +RGRK+F    ++K KG D    K G+ EE  LYGYMG++EDLDK+D   ++ S++KSKKEI D  + PVK++
Sbjct: 1031 KGFSGGRMKVCMGKPGNGSVLLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTKRRSLIKSKKEIRDFVDAPVKSE 1148          
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: K4D4Z2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g007310.1 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.510e-41
Identity = 76/138 (55.07%), Postives = 96/138 (69.57%), Query Frame = -2
Query:  629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042
            +KLN + + ++RYKEQG AG LFCIVC  S  KEF DT+ L  H +MS +V L+A+HLGLHKAICVL+GW+S APPD   W+P  +P   A AQKEDL+LWPP+V+IHN S        QKV   E V+ FLRG+  +
Sbjct:  723 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNAFAQKEDLILWPPVVIIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 860          

HSP 2 Score: 122.094 bits (305), Expect = 1.015e-26
Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = -3
Query:  127 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKT 462
            KGF GG++ VC+G+P + S+++VKFLGT  G+  AE+LH YF+E +RGRK+F    ++K KG D    K G+ EE  LYGYMG++EDLDK+D   R+ S++KSKKEI D  + PVK+
Sbjct:  857 KGFSGGRMKVCMGKPGNGSILLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTRRRSLIKSKKEIHDFVDAPVKS 973          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068TUA8_COFCA4.938e-4961.76Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
I3RZF0_LOTJA4.769e-4874.00Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
M1BPX7_SOLTU5.325e-4256.52Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M1BPX6_SOLTU1.455e-4156.52Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4D4Z2_SOLLC2.510e-4155.07Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21596:SF14SUBFAMILY NOT NAMEDcoord: 1..130
NoneNo IPR availablePANTHERPTHR21596RIBONUCLEASE P SUBUNIT P38coord: 1..130

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019448 ID=g.arboreum_cottongen_reftransV1_0019448; Name=g.arboreum_cottongen_reftransV1_0019448; organism=Gossypium arboreum; type=contig; length=1043bp
GGGATACAATACAAAACTAGCAGAAAATAAGGTTTAATGAAATGGCTTTG
TTTTAGAAGAGATATTAACTAAAATATTCCTTCAGAGAGATATATGTATG
TATATTATGAAAAGCTACCTTTCATCAGTTTTGACAGGATCATTAGCCAA
GTCCAGGATCTCCTTCTTGCTCTTTACCACACTCCATTTCCTGTTATGAA
AATCAAGTTTGTCCAAGTCCTCTGATACTCCCATATATCCATACAGCAGT
TGTTCCTCCCCCTCACCGGGTTTTCCCATTTCCTCATCCCCCTTATTTTT
TGATGTAAATTCCTTTCTCCCTCGCTTATTCTCCACGAAATACTTGTGAA
GTCTCTCTGCCATCGCCAGTCCAGTAAATGTGCCTAAGAATTTCACCACC
ATAACACTTTGGTCTGCAGGCCTCCCTAGGCACACCGTGATTTTCCCCCC
AACAAACCCTTTATCTGTCATCATTCAATAACCAACATGGGGAAGAACAA
GAAAAACAACAAAACCACAATCCATGAAAACAAATAAATACACATCAGTC
TTCATATTCACCAGTAAGTATAAAAGCTTACTAAATACATTAAGGCGTTT
ACTAAATAAATCATCATGCAAATTTATCAGTCAAGTGCTCACCTCTTAGG
AAAGCCTGCACCCCTTCAATTGGAACAACCTTCTGTTCTTGAGGGTTGTT
ATTTGCCATGGAAATGTTGTGGATGACCACAATTGGAGGCCAGAGAACCA
AATCCTCCTTCTGAGCCAAGGCTTCAGCTTCAGGCAAGACCTGGGGAACC
CATGTTATAGTGTCAGGAGGTGCTATGCTGTCCCACCCCAGCAACACACA
TATTGCTTTGTGAAGACCCAAGTGCTCTGCCCTCAACCCAACCCTGTGAG
ACATGAAAGCATGCGTCACCAGGCGTTGGGTGTCCATGAATTCCTTTGAG
TAGCTTCTTCCACATACAATGCAGAACAAACTACCAGCATTTCCTTGCTC
CTTGTATCTTCTACGAGCAGACTGGTTCAAATTTAACTTTCTA
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