g.arboreum_cottongen_reftransV1_0019448, g.arboreum_cottongen_reftransV1_0019448 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A068TUA8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029583001 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 4.938e-49 Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = -2 Query: 629 LNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1036 LN R RYKEQG AGSLFCIVCG+S SKEF TQ L TH FMS + GLRA+HLGLHKAICVLLGW ++ D IT+ PQ + +EALAQKEDL+LWPP+V+IH+ISM+ +P+ QKV E V+ FLRG+ + Sbjct: 471 LNEKLGTRNRYKEQGRAGSLFCIVCGKSLSKEFKATQGLATHCFMSKKAGLRAQHLGLHKAICVLLGWSTVVGADVITFTPQAISSSEALAQKEDLILWPPVVIIHSISMSAGHPKGQKVFTEEAVEDFLRGKGFS 606 HSP 2 Score: 104.76 bits (260), Expect = 2.996e-21 Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 130 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTS--------KNKGDEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVK 462 KGF GKI VC G A+ ++MVVKFLGTF GL AE+LHKYF+++K GR +F NK E M + + EE +L GYM +SEDLDK+DF ++ V+SK+EI D+A +P+K Sbjct: 603 KGFSVGKIKVCQGMSAN-NIMVVKFLGTFPGLRDAEKLHKYFLDDKHGRIDFEQMSSVKGKDNNKKKERM-QADKFEEYVLCGYMAISEDLDKVDFETKRKCSVRSKREIEDIAEEPLK 719
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: I3RZF0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 4.769e-48 Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = -2 Query: 638 MDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 937 MDTQRLVTHAFMSH+ GLRA+HL LHKAICV++GWD++ P DT+TWVPQVLP AEALAQKEDL+LWPPI +IHNISM ++NPQ KVV +E ++AFLRG+ Sbjct: 1 MDTQRLVTHAFMSHKTGLRAKHLALHKAICVMMGWDTVVPQDTVTWVPQVLPHAEALAQKEDLILWPPIAIIHNISMYDDNPQNWKVVSMETIEAFLRGK 100 HSP 2 Score: 138.658 bits (348), Expect = 3.099e-35 Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = -3 Query: 121 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKG---DEEMGKPGEGE--EQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDE 462 KGFV G++ +CLG+PADQSV++VKFLGTF GL AERLHKY EN RGR E+ G +G+ +GE E +LYGY+GV++DLDKLDF+++ WS+VKS+KEI DL PVKTD+ Sbjct: 100 KGFVTGRVKLCLGKPADQSVILVKFLGTFGGLGDAERLHKYLSENNRGRAEYEKVKSGSIKSSNIGETDQGEQVESILYGYVGVADDLDKLDFNSKSWSLVKSRKEIDDLEKAPVKTDK 218
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: M1BPX7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019495 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 5.325e-42 Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = -2 Query: 629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042 +KLN + + ++RYKEQG AG LFCIVC S KEF DT+ L H +MS +V L+A+HLGLHKAICVL+GW+S APPD W+P +P ALAQKEDL+LWPP+VVIHN S QKV E V+ FLRG+ + Sbjct: 642 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNALAQKEDLILWPPVVVIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 779 HSP 2 Score: 121.324 bits (303), Expect = 1.719e-26 Identity = 61/118 (51.69%), Postives = 86/118 (72.88%), Query Frame = -3 Query: 124 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTD 462 KGF GG++ VC+G+P + SV++VKFLGT G+ AE+LH YF+E +RGRK+F ++K KG D K G+ EE LYGYMG++EDLDK+D ++ S++KSKKEI D + PVK++ Sbjct: 776 KGFSGGRMKVCMGKPGNGSVLLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTKRRSLIKSKKEIRDFVDAPVKSE 893
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: M1BPX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019495 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.455e-41 Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = -2 Query: 629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042 +KLN + + ++RYKEQG AG LFCIVC S KEF DT+ L H +MS +V L+A+HLGLHKAICVL+GW+S APPD W+P +P ALAQKEDL+LWPP+VVIHN S QKV E V+ FLRG+ + Sbjct: 897 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNALAQKEDLILWPPVVVIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 1034 HSP 2 Score: 121.324 bits (303), Expect = 2.230e-26 Identity = 61/118 (51.69%), Postives = 86/118 (72.88%), Query Frame = -3 Query: 124 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTD 462 KGF GG++ VC+G+P + SV++VKFLGT G+ AE+LH YF+E +RGRK+F ++K KG D K G+ EE LYGYMG++EDLDK+D ++ S++KSKKEI D + PVK++ Sbjct: 1031 KGFSGGRMKVCMGKPGNGSVLLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTKRRSLIKSKKEIRDFVDAPVKSE 1148
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: K4D4Z2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g007310.1 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.510e-41 Identity = 76/138 (55.07%), Postives = 96/138 (69.57%), Query Frame = -2 Query: 629 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHLT 1042 +KLN + + ++RYKEQG AG LFCIVC S KEF DT+ L H +MS +V L+A+HLGLHKAICVL+GW+S APPD W+P +P A AQKEDL+LWPP+V+IHN S QKV E V+ FLRG+ + Sbjct: 723 KKLNESVATQKRYKEQGRAGGLFCIVCANSQLKEFKDTRSLAVHCYMSQKVWLKAKHLGLHKAICVLMGWNSDAPPDGKLWLPVAVPAPNAFAQKEDLILWPPVVIIHNCSGLVTGLDGQKVTTTEAVENFLRGKGFS 860 HSP 2 Score: 122.094 bits (305), Expect = 1.015e-26 Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = -3 Query: 127 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF----TSKNKG-DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKT 462 KGF GG++ VC+G+P + S+++VKFLGT G+ AE+LH YF+E +RGRK+F ++K KG D K G+ EE LYGYMG++EDLDK+D R+ S++KSKKEI D + PVK+ Sbjct: 857 KGFSGGRMKVCMGKPGNGSILLVKFLGTIPGIQDAEKLHNYFMEEERGRKDFRVITSTKGKGIDNRNVKGGKAEEISLYGYMGIAEDLDKVDIDTRRRSLIKSKKEIHDFVDAPVKS 973 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019448 ID=g.arboreum_cottongen_reftransV1_0019448; Name=g.arboreum_cottongen_reftransV1_0019448; organism=Gossypium arboreum; type=contig; length=1043bpback to top |