g.arboreum_cottongen_reftransV1_0019448, g.arboreum_cottongen_reftransV1_0019448 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: I1NHN1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 3.390e-64 Identity = 100/135 (74.07%), Postives = 122/135 (90.37%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 +KLNLN +RRY++QG AGSL+CIVCGRS SKEFMDTQRLVTHAFMSH+ GLRA+HLGLHKA+CVL+GWD++ P DT+TWVPQVLP+AEALAQKEDL+LWPPIV+IHNISM+++NPQ KVV +E ++ FLRG+ Sbjct: 725 KKLNLNLYVQRRYEDQGKAGSLYCIVCGRSSSKEFMDTQRLVTHAFMSHKAGLRAKHLGLHKAVCVLMGWDTVVPQDTVTWVPQVLPQAEALAQKEDLILWPPIVIIHNISMSDDNPQNWKVVSMETIEGFLRGK 859 HSP 2 Score: 135.191 bits (339), Expect = 4.544e-31 Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = -3 Query: 118 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTS-KNKGDEE--MGKPGEGE--EQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDER 462 KGFV G+I +CLG+PADQSV++VKFLGTF GL AERLHKY +N GR E+ K++G + + + EG+ E +LYGY+G++EDLDKLDF+++KWS+VKS+KEI DL PVKTDE+ Sbjct: 859 KGFVRGRIKLCLGKPADQSVVLVKFLGTFGGLGDAERLHKYLSDNNHGRAEYERVKSEGIKSCNISETDEGDKVENILYGYVGIAEDLDKLDFNSKKWSMVKSRKEIDDLDKAPVKTDEK 978
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: U5FZR0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24220g PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.109e-62 Identity = 99/135 (73.33%), Postives = 119/135 (88.15%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 ++LNLN + RRRYKEQG AGSLFCIVCG+S SKEFM Q LV HAFMSH++GLRA+HLGLHKAICVL+GW+S P D IT P++LP+ EA AQKEDL+LWPP+VVIHNISM+NNNP++QKV+PIEGV+AFLRG+ Sbjct: 734 KRLNLNTAVRRRYKEQGKAGSLFCIVCGKSSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVLMGWNSSVPCDAITCAPEILPDEEAFAQKEDLMLWPPLVVIHNISMSNNNPEQQKVIPIEGVEAFLRGK 868 HSP 2 Score: 146.747 bits (369), Expect = 4.492e-35 Identity = 75/124 (60.48%), Postives = 93/124 (75.00%), Query Frame = -3 Query: 112 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKGD-------EEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDER*L 462 KG VGGKI VCLG+PADQSVM+VKFLGTFTGL AE+LHKYF E K GR+EF + EE + G+ EE LLYGY+G++EDLD+LDF+ +K ++KSKKEI +LAN PVKTD++ L Sbjct: 868 KGIVGGKIKVCLGKPADQSVMLVKFLGTFTGLGNAEKLHKYFAEKKHGREEFEHNTSNNINNSNSLEEETQGGQLEEHLLYGYLGIAEDLDRLDFNTKKRILIKSKKEIQELANAPVKTDDKSL 991
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: W9SEY8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016775 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.500e-62 Identity = 97/137 (70.80%), Postives = 122/137 (89.05%), Query Frame = -2 Query: 632 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHL 1042 + +N+N + +RRYKE+G AGSLFCIVCGRS SKEFMDTQRLVTHAFMSH+ GLRAEHLGLH+AI VLLGW ++ P DTITWVPQVLP+ EALAQKEDL+LWPP+++IHNIS+++NNP++ KVV +E ++AF+RG+ L Sbjct: 775 KMVNVNPAVQRRYKEEGKAGSLFCIVCGRSASKEFMDTQRLVTHAFMSHKAGLRAEHLGLHRAISVLLGWSTVVPDDTITWVPQVLPKEEALAQKEDLILWPPVIIIHNISLSHNNPEKWKVVTMEALEAFIRGKGL 911 HSP 2 Score: 139.428 bits (350), Expect = 1.675e-32 Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = -3 Query: 121 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEF---TSKNKGDEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDE 462 KG + G+I V LG+PADQS MVVKFLGTFTGL AE+LHKYF E RGR E TS N+ G+ G EE +LYGY+G+SEDLDK+D++ R +VKSKKEILDLAN PVK +E Sbjct: 909 KGLIRGRIKVVLGKPADQSTMVVKFLGTFTGLGDAEKLHKYFAECNRGRLELELATSNNREISINGEAGIVEEHMLYGYLGISEDLDKVDYNTRNTGLVKSKKEILDLANAPVKPEE 1025
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: B9HL24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02490g PE=4 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 4.477e-62 Identity = 100/135 (74.07%), Postives = 119/135 (88.15%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 ++LNLN + +RRYKEQG AGSLFCIVCG+S SKEFM Q LV HAFMSH++GLRA+HLGLHKAICVL+GW+S P D IT VP++LP EA+AQKEDL+LWPP+VVIHNISM+NNNP+ QKVVPIEGV+AFLRG+ Sbjct: 614 KRLNLNSAVQRRYKEQGKAGSLFCIVCGKSSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVLMGWNSSVPCDAITCVPEILPAEEAVAQKEDLMLWPPLVVIHNISMSNNNPEHQKVVPIEGVEAFLRGK 748 HSP 2 Score: 130.183 bits (326), Expect = 1.626e-29 Identity = 77/125 (61.60%), Postives = 93/125 (74.40%), Query Frame = -3 Query: 112 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKGD--------EEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDER*L 462 KG VGGKI VCLG+PADQS+M+VKFLGTFTGL AE+LHKYF E K GR+EF K + EE G+ EEQLLYGY+G++EDLD LDF+ +KW +KSKKEI +LAN PVKTD++ L Sbjct: 748 KGIVGGKIKVCLGKPADQSIMLVKFLGTFTGLGNAEKLHKYFAEKKHGREEFEHKTSNNGNNISSSKEETQGGGKLEEQLLYGYLGIAEDLDGLDFNTKKWIKIKSKKEIQELANAPVKTDDKLL 872
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: B9HL25_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02490g PE=4 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 5.398e-62 Identity = 100/135 (74.07%), Postives = 119/135 (88.15%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 ++LNLN + +RRYKEQG AGSLFCIVCG+S SKEFM Q LV HAFMSH++GLRA+HLGLHKAICVL+GW+S P D IT VP++LP EA+AQKEDL+LWPP+VVIHNISM+NNNP+ QKVVPIEGV+AFLRG+ Sbjct: 734 KRLNLNSAVQRRYKEQGKAGSLFCIVCGKSSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVLMGWNSSVPCDAITCVPEILPAEEAVAQKEDLMLWPPLVVIHNISMSNNNPEHQKVVPIEGVEAFLRGK 868
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: V7BH67_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G104100g PE=4 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.302e-61 Identity = 99/134 (73.88%), Postives = 116/134 (86.57%), Query Frame = -2 Query: 641 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRG 1042 +KLNLN +RRY++ G AGSL+CI CGRS SKEFMDTQRLVTHAFMSH+ GLRA+H+GLHKA+CVL+GWD P DT+TWVPQVLP AEALAQKEDL+LWPPIVVIHNISM++ NPQ KVV +E ++AFLRG Sbjct: 723 KKLNLNLYVQRRYQDHGKAGSLYCIACGRSSSKEFMDTQRLVTHAFMSHKAGLRAKHMGLHKAVCVLMGWDIAVPQDTVTWVPQVLPPAEALAQKEDLILWPPIVVIHNISMSDQNPQNWKVVSMETIEAFLRG 856 HSP 2 Score: 133.265 bits (334), Expect = 2.034e-30 Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = -3 Query: 118 GFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTS-KNKGDEE--MGKPGEGE--EQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDER 459 GFV G+I +CLG+PADQS+++VKFLGTF GL AERLHKY +N R R E+ K++G + M + EG E +LYGY+G++ED DKLDF+++KWS+VKS+KEI DL PVKTD+R Sbjct: 858 GFVSGRIKLCLGKPADQSIVLVKFLGTFGGLGDAERLHKYLSDNNRSRAEYERVKSEGIKSCNMRETDEGAKVENILYGYVGIAEDFDKLDFNSKKWSMVKSRKEIDDLDKAPVKTDDR 976
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A072VN73_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g492940 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 5.135e-61 Identity = 94/135 (69.63%), Postives = 118/135 (87.41%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 + LNLN +RRY++QG AG LFCIVCGRS SKEFMDT+ LVTHAFMSH+ G+RA+HLGLHKAICV++GWD+ P DT+TWVPQVLP AEALAQKEDL+LWPP+V+IHNISM+++NPQ KV+ +E ++AF+RG+ Sbjct: 824 KNLNLNLPVQRRYQKQGKAGCLFCIVCGRSSSKEFMDTRSLVTHAFMSHKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIHNISMSDDNPQNWKVISMETIEAFIRGK 958 HSP 2 Score: 129.413 bits (324), Expect = 3.805e-29 Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = -3 Query: 118 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKG-----DEEMGKPGEGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDER 462 KGFV G+I +CLG+PADQS +VKFLGTF GL AER+HKY ++ RGR ++ G + E G+ E LYGY+ ++EDL+KLDF+++ WS VKS+K+I DL DPVKTDER Sbjct: 958 KGFVRGRIKLCLGKPADQSTFLVKFLGTFVGLGDAERIHKYLSDSNRGRADYERVKSGGVTSCNIEETDQGDKVESFLYGYVAIAEDLEKLDFNSKNWSTVKSRKDIDDLDKDPVKTDER 1077
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A072VPX0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g492940 PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 6.972e-61 Identity = 96/137 (70.07%), Postives = 119/137 (86.86%), Query Frame = -2 Query: 632 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHL 1042 + LNLN +RRY++QG AG LFCIVCGRS SKEFMDT+ LVTHAFMSH+ G+RA+HLGLHKAICV++GWD+ P DT+TWVPQVLP AEALAQKEDL+LWPP+V+IHNISM+++NPQ KV+ +E ++AF+RGE L Sbjct: 795 KNLNLNLPVQRRYQKQGKAGCLFCIVCGRSSSKEFMDTRSLVTHAFMSHKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIHNISMSDDNPQNWKVISMETIEAFIRGEFL 931
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A072VNS0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g492940 PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 8.404e-61 Identity = 96/137 (70.07%), Postives = 119/137 (86.86%), Query Frame = -2 Query: 632 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGEHL 1042 + LNLN +RRY++QG AG LFCIVCGRS SKEFMDT+ LVTHAFMSH+ G+RA+HLGLHKAICV++GWD+ P DT+TWVPQVLP AEALAQKEDL+LWPP+V+IHNISM+++NPQ KV+ +E ++AF+RGE L Sbjct: 824 KNLNLNLPVQRRYQKQGKAGCLFCIVCGRSSSKEFMDTRSLVTHAFMSHKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIHNISMSDDNPQNWKVISMETIEAFIRGEFL 960
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Match: A0A059ACP0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01002 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.215e-49 Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = -2 Query: 638 RKLNLNQSARRRYKEQGNAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHRVGLRAEHLGLHKAICVLLGWDSIAPPDTITWVPQVLPEAEALAQKEDLVLWPPIVVIHNISMANNNPQEQKVVPIEGVQAFLRGE 1042 +KLN N +RRY QG AGSLFC+VCGRS SKEF TQ L HA MS +VGLRA+HLGLH+AICVLLGW S+ D I WVP+ LP+ AL QKEDL+LWPP+VVIHNISMA ++P++Q+V+P E ++ FLRG+ Sbjct: 657 KKLNTNSRVQRRYLAQGKAGSLFCVVCGRSSSKEFQGTQNLAKHALMSRKVGLRAQHLGLHRAICVLLGW-SLVTADPINWVPEPLPDDIALTQKEDLILWPPLVVIHNISMAVDDPKDQRVIPRERIETFLRGK 790 HSP 2 Score: 137.502 bits (345), Expect = 5.512e-32 Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = -3 Query: 121 KGFVGGKITVCLGRPADQSVMVVKFLGTFTGLAMAERLHKYFVENKRGRKEFTSKNKGDEEMGK---PG----EGEEQLLYGYMGVSEDLDKLDFHNRKWSVVKSKKEILDLANDPVKTDE 462 KGF GK+ VCLG+PADQSV+VVKFL TF+GL A +LH+YF ENKRGR EF + E K PG + +E LLYGYMG++EDLDK+D++ +K S VKSKKEI DLAN PVK+ E Sbjct: 790 KGFAEGKMVVCLGKPADQSVIVVKFLNTFSGLGNAGKLHEYFAENKRGRVEFEKRTTDHGEGNKNEAPGMQGNDEDETLLYGYMGIAEDLDKIDYYAKKTSWVKSKKEIYDLANAPVKSKE 910 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019448 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019448 ID=g.arboreum_cottongen_reftransV1_0019448; Name=g.arboreum_cottongen_reftransV1_0019448; organism=Gossypium arboreum; type=contig; length=1043bpback to top |