g.arboreum_cottongen_reftransV1_0008254, g.arboreum_cottongen_reftransV1_0008254 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008254
Unique Nameg.arboreum_cottongen_reftransV1_0008254
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0008254:1..1379 .
Chr13:49840680..49843165 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: V7AWX8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G183700g PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.308e-54
Identity = 177/373 (47.45%), Postives = 225/373 (60.32%), Query Frame = -2
Query:  245 TKMVAISLYRGNLHRAPEVSWRWLMPTPKISLKDFKXXXXXXXXXXXXXXXXXXXXXXXXXXLKHQIQSPVSCEPPIEPKLKAKLEPEPSEGLKTGPPLQEVKVDIVGGSDGGG-CLVKSEDEQTEKDINLQVD--EKPPEEAKTNVE-------------------------VSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNR-PAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPW 1276
            ++MVAISLYRGNLHR PEV  RW MP PKISLKDFK LL RR +ALS                                +L+A   P P+  L     L+     IV G+D  G   V  EDE  ++ + + V   +KP  E+ + V+                         V+D ++  + KEKRK+++EEKL  LN  KHSLV VLKQIL+AEEE KRRN  Q    R P+ P+Q + TND+GSM R + PR+G + NLAG+ DG + DD++NH +HSR V R SS SPSSESPLRR   +Q N +S+PSR ++G  GSPSRFA +G+QG+P N P VSVSGT+++ASSPSPAASGGTSV R+A QPSPW
Sbjct:    8 SRMVAISLYRGNLHRVPEVPRRWPMPAPKISLKDFKCLLARRSKALS--------------------------------RLRAS-NPNPNNTLSNDSQLEPSPDAIVTGADAEGPSAVSREDEDHKEPLLVAVTSAKKPLGESDSLVDAMIGEASEKKPLDGDDVSTEKQTEPVTDNVDLPDEKEKRKKEIEEKLHGLNENKHSLVLVLKQILSAEEEFKRRNSMQMVGMRGPSGPVQGDGTNDTGSMIRHMPPRLGSEGNLAGDVDGGDGDDLANHTMHSRLVLRPSSMSPSSESPLRRTPSVQQNAISNPSRANLGAAGSPSRFALSGHQGNPTNLPQVSVSGTSYIASSPSPAASGGTSVFRDARQPSPW 347          
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A072THS8_MEDTR (Plant/T23J7-180 protein, putative OS=Medicago truncatula GN=MTR_0168s0110 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.941e-53
Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = -2
Query:  245 DKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQ--GTVNR-PAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNV-HSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPW 835
            D +ND +  EKRK++V++KLQVLNAKKH+LV VLKQILNAEEELKRRN  Q  G   R P+VPL+ + TND+ S++R + PR+G + NL G+ DGVEADD +NHN+ HSR V R SS SPSS+SPLRR    Q N+VS+P+R S    GSPSRFA +G QG+P N P+VSVSGT+++ASSPSPAASGGTSV R+A  PSPW
Sbjct:  149 DLLNDED--EKRKKEVQDKLQVLNAKKHNLVLVLKQILNAEEELKRRNSVQQQGIAMRGPSVPLKADGTNDTASVSRYMAPRVGSEGNLVGDMDGVEADDFTNHNMQHSRLVLRTSSMSPSSDSPLRRTPSGQQNMVSNPARGSFAAAGSPSRFAQSGQQGNPMNLPSVSVSGTSYIASSPSPAASGGTSVFRDARHPSPW 347          
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: W9QE73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008944 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.488e-46
Identity = 123/209 (58.85%), Postives = 141/209 (67.46%), Query Frame = -2
Query:  242 EEAKTNVEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHP-SRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 865
            E A  N EV  K +  N K+KRK +VEEKLQVLN KKHSLVQ+LKQILNAEEELKRR   QG   RP+ P                         L+G+ +GVE D +SN N HSR +FRM+S SPSSESP+RRP +IQHNV  HP SRTS+G T SP RF P  +QGHP N PT+SVSGTN+VASSPSPAASGGTS  R+   PSPWN
Sbjct:  157 EFANPNSEVGKKEDLPNEKQKRKTEVEEKLQVLNDKKHSLVQLLKQILNAEEELKRRINMQGNALRPSAP-------------------------LSGDVEGVETDALSNQNFHSRQIFRMNSMSPSSESPIRRPPFIQHNVAPHPTSRTSLGTTSSPLRFTPMAHQGHPTNVPTLSVSGTNYVASSPSPAASGGTSTFRDTRLPSPWN 340          

HSP 2 Score: 64.3142 bits (155), Expect = 5.064e-8
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = -2
Query: 1169 MVAISLYRGNLHRAPEVSWRWLMPTPKISLKDFK 1270
            M AISLYRGNLHR P+V  RWLMPTP+ISLKDF+
Sbjct:    1 MGAISLYRGNLHRVPDVPRRWLMPTPQISLKDFR 34          
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A068V321_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_92 OS=Coffea canephora GN=GSCOC_T00042391001 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.949e-45
Identity = 127/226 (56.19%), Postives = 158/226 (69.91%), Query Frame = -2
Query:  242 EDEQTEKDINLQVDEKPPEEAKTNVEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 919
            ++EQ ++++ L ++   P+      E SDK        KRK++VEEKL++L  KKH LVQVLKQI NAEEEL+RR+  QG    P+VPLQV+   D+GSMTRL TPR+G D  L GE DG E D + NHN  +RH+ RMSS+SPS  S  +      +NVV +P+R S+GV+ SPSRFAPTG QG   N PTVSVSGTN+VASSPSPAASGGTSV RE+  PSPWN
Sbjct:  172 KNEQQQEEVPLLLNPTAPQTTSKEDEESDKY-------KRKKEVEEKLKILKEKKHGLVQVLKQIQNAEEELRRRSSGQGMAVCPSVPLQVDIPTDTGSMTRLNTPRVGSDGTLGGEVDGGENDGMLNHNPDARHLLRMSSSSPSPSSDSQPKKPA-YNVVPNPARASLGVS-SPSRFAPTGQQGPTSNLPTVSVSGTNYVASSPSPAASGGTSVFRESRVPSPWN 388          
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A022R6P3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010404mg PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.827e-43
Identity = 106/203 (52.22%), Postives = 130/203 (64.04%), Query Frame = -2
Query:  242 VEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGEND-GVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 847
            V+ S++ N  +  EKRK++V+EKL+ LN KKH LVQVLKQIL AEE+LKR+N TQG   RP +PLQV+TTNDSGSMTR+ TPR+G D N +GE + G EADD                                   V H  RT++GV GSPSRFAP G QGH     +V+VSG +F+ SSPSPAASGGTSV R++  PSPWN
Sbjct:  152 VQKSNEENSSSEVEKRKKEVQEKLETLNDKKHGLVQVLKQILKAEEQLKRQNSTQGISGRPPLPLQVDTTNDSGSMTRINTPRVGSDGNPSGETEGGGEADD-----------------------------------VPHSYRTTLGVVGSPSRFAPAG-QGH-----SVTVSGASFIGSSPSPAASGGTSVFRDSRLPSPWN 313          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7AWX8_PHAVU2.308e-5447.45Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A072THS8_MEDTR5.941e-5362.69Plant/T23J7-180 protein, putative OS=Medicago trun... [more]
W9QE73_9ROSA2.488e-4658.85Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A068V321_COFCA4.949e-4556.19Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A022R6P3_ERYGU3.827e-4352.22Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171
NoneNo IPR availablePANTHERPTHR36764FAMILY NOT NAMEDcoord: 2..343
NoneNo IPR availablePANTHERPTHR36764:SF1SUBFAMILY NOT NAMEDcoord: 2..343

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008254 ID=g.arboreum_cottongen_reftransV1_0008254; Name=g.arboreum_cottongen_reftransV1_0008254; organism=Gossypium arboreum; type=contig; length=1379bp
AGAGAATGGAAGAAATCCAAAAGAAAAATGAAAAAAAAGAAGAAGCTTCA
ACTTCAATAAATGGCTAACAAGTAAAAGGCGGCATCTCCACAGACCTGAT
AATATTATATGAAATTGAGAACCGATGTTCTCGCTTTGATTAAGCAGGAA
GAACTAGAAAGGGCTTACAATGTTGCCAAGCTCGCAATACACATCTTAGA
GGCTCAAGTCACAAGAAAAGTTCAATTTGCTACAGATTCTAATTCCATGG
GCTTGGCTGCCAAGCCTCTCGTAAGACTGAAGTGCCACCAGATGCTGCAG
GGGAAGGAGATGATGCAACGAAATTTGTTCCTGACACAGATACGGTGGGA
GGATTCCCAGGATGACCTTGATTTCCAGTAGGAGCAAAACGTGAAGGACT
ACCTGTGACCCCCATGCTTGTTCGAGAAGGGTGGGAAACCACATTATGTT
GAATGTAGGTAGGCCTTCTAAGAGGAGATTCTGAAGATGGAGATGTACTG
CTCATCCGAAACACATGACGAGAATGAACGTTATGGTTTGAAACATCATC
AGCTTCAACTCCATCATTTTCACCAGCAAGATTAGCATCCAAGCCCATCC
GAGGAGTGACAAGCCTCGTCATTGACCCTGAGTCATTTGTGGTTTCCACT
TGAAGTGGAACGGCTGGACGATTCACTGTACCTTGTGTGCCATTTCTTCT
CTTCAACTCCTCCTCTGCATTCAAGATCTGCTTTAGTACTTGTACTAAAC
TATGCTTTTTTGCATTCAAAACCTGTAATTTCTCCTCAACATCCCTTTTC
CTTTTTTCTTTTCCATTGAAATCATTTATTTTATCGCTTACCTCTACATT
TGTTTTAGCCTCCTCAGGCGGCTTCTCATCCACTTGCAAATTGATATCTT
TCTCGGTCTGCTCATCTTCCGACTTCACCAAACAACCTCCACCGTCGGAT
CCTCCAACTATGTCCACCTTGACCTCCTGGAGAGGTGGTCCAGTTTTCAA
ACCCTCGGACGGTTCAGGTTCCAGTTTGGCTTTCAATTTCGGCTCAATAG
GAGGCTCACAGGACACGGGAGATTGAATTTGATGCTTTAAAACAGAGTTA
GGGCTAGGGTTAGAAGAAGAAGAGGAACGGAGACGAGAGAGAGCTCTGTC
GCGGCGGTGCAAGAGAGATTTGAAGTCTTTGAGAGAGATTTTGGGAGTCG
GCATTAGCCAGCGCCAAGATACCTCCGGTGCTCTGTGGAGGTTCCCTCTG
TACAAAGAAATCGCCACCATTTTTGTGGCATAATCGAAAATAAAATTTTA
CGGTTATGGATATTATCTCAGGCTTTTCCGTAATAACCGCATTCAACAAA
CGACTGTTGCACGGCTTGCGAGAGCAAAT
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