g.arboreum_cottongen_reftransV1_0008254, g.arboreum_cottongen_reftransV1_0008254 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: V7AWX8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G183700g PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 2.308e-54 Identity = 177/373 (47.45%), Postives = 225/373 (60.32%), Query Frame = -2 Query: 245 TKMVAISLYRGNLHRAPEVSWRWLMPTPKISLKDFKXXXXXXXXXXXXXXXXXXXXXXXXXXLKHQIQSPVSCEPPIEPKLKAKLEPEPSEGLKTGPPLQEVKVDIVGGSDGGG-CLVKSEDEQTEKDINLQVD--EKPPEEAKTNVE-------------------------VSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNR-PAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPW 1276 ++MVAISLYRGNLHR PEV RW MP PKISLKDFK LL RR +ALS +L+A P P+ L L+ IV G+D G V EDE ++ + + V +KP E+ + V+ V+D ++ + KEKRK+++EEKL LN KHSLV VLKQIL+AEEE KRRN Q R P+ P+Q + TND+GSM R + PR+G + NLAG+ DG + DD++NH +HSR V R SS SPSSESPLRR +Q N +S+PSR ++G GSPSRFA +G+QG+P N P VSVSGT+++ASSPSPAASGGTSV R+A QPSPW Sbjct: 8 SRMVAISLYRGNLHRVPEVPRRWPMPAPKISLKDFKCLLARRSKALS--------------------------------RLRAS-NPNPNNTLSNDSQLEPSPDAIVTGADAEGPSAVSREDEDHKEPLLVAVTSAKKPLGESDSLVDAMIGEASEKKPLDGDDVSTEKQTEPVTDNVDLPDEKEKRKKEIEEKLHGLNENKHSLVLVLKQILSAEEEFKRRNSMQMVGMRGPSGPVQGDGTNDTGSMIRHMPPRLGSEGNLAGDVDGGDGDDLANHTMHSRLVLRPSSMSPSSESPLRRTPSVQQNAISNPSRANLGAAGSPSRFALSGHQGNPTNLPQVSVSGTSYIASSPSPAASGGTSVFRDARQPSPW 347
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A072THS8_MEDTR (Plant/T23J7-180 protein, putative OS=Medicago truncatula GN=MTR_0168s0110 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 5.941e-53 Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = -2 Query: 245 DKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQ--GTVNR-PAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNV-HSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPW 835 D +ND + EKRK++V++KLQVLNAKKH+LV VLKQILNAEEELKRRN Q G R P+VPL+ + TND+ S++R + PR+G + NL G+ DGVEADD +NHN+ HSR V R SS SPSS+SPLRR Q N+VS+P+R S GSPSRFA +G QG+P N P+VSVSGT+++ASSPSPAASGGTSV R+A PSPW Sbjct: 149 DLLNDED--EKRKKEVQDKLQVLNAKKHNLVLVLKQILNAEEELKRRNSVQQQGIAMRGPSVPLKADGTNDTASVSRYMAPRVGSEGNLVGDMDGVEADDFTNHNMQHSRLVLRTSSMSPSSDSPLRRTPSGQQNMVSNPARGSFAAAGSPSRFAQSGQQGNPMNLPSVSVSGTSYIASSPSPAASGGTSVFRDARHPSPW 347
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: W9QE73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008944 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.488e-46 Identity = 123/209 (58.85%), Postives = 141/209 (67.46%), Query Frame = -2 Query: 242 EEAKTNVEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHP-SRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 865 E A N EV K + N K+KRK +VEEKLQVLN KKHSLVQ+LKQILNAEEELKRR QG RP+ P L+G+ +GVE D +SN N HSR +FRM+S SPSSESP+RRP +IQHNV HP SRTS+G T SP RF P +QGHP N PT+SVSGTN+VASSPSPAASGGTS R+ PSPWN Sbjct: 157 EFANPNSEVGKKEDLPNEKQKRKTEVEEKLQVLNDKKHSLVQLLKQILNAEEELKRRINMQGNALRPSAP-------------------------LSGDVEGVETDALSNQNFHSRQIFRMNSMSPSSESPIRRPPFIQHNVAPHPTSRTSLGTTSSPLRFTPMAHQGHPTNVPTLSVSGTNYVASSPSPAASGGTSTFRDTRLPSPWN 340 HSP 2 Score: 64.3142 bits (155), Expect = 5.064e-8 Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = -2 Query: 1169 MVAISLYRGNLHRAPEVSWRWLMPTPKISLKDFK 1270 M AISLYRGNLHR P+V RWLMPTP+ISLKDF+ Sbjct: 1 MGAISLYRGNLHRVPDVPRRWLMPTPQISLKDFR 34
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A068V321_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_92 OS=Coffea canephora GN=GSCOC_T00042391001 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 4.949e-45 Identity = 127/226 (56.19%), Postives = 158/226 (69.91%), Query Frame = -2 Query: 242 EDEQTEKDINLQVDEKPPEEAKTNVEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGENDGVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 919 ++EQ ++++ L ++ P+ E SDK KRK++VEEKL++L KKH LVQVLKQI NAEEEL+RR+ QG P+VPLQV+ D+GSMTRL TPR+G D L GE DG E D + NHN +RH+ RMSS+SPS S + +NVV +P+R S+GV+ SPSRFAPTG QG N PTVSVSGTN+VASSPSPAASGGTSV RE+ PSPWN Sbjct: 172 KNEQQQEEVPLLLNPTAPQTTSKEDEESDKY-------KRKKEVEEKLKILKEKKHGLVQVLKQIQNAEEELRRRSSGQGMAVCPSVPLQVDIPTDTGSMTRLNTPRVGSDGTLGGEVDGGENDGMLNHNPDARHLLRMSSSSPSPSSDSQPKKPA-YNVVPNPARASLGVS-SPSRFAPTGQQGPTSNLPTVSVSGTNYVASSPSPAASGGTSVFRESRVPSPWN 388
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Match: A0A022R6P3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010404mg PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.827e-43 Identity = 106/203 (52.22%), Postives = 130/203 (64.04%), Query Frame = -2 Query: 242 VEVSDKINDFNGKEKRKRDVEEKLQVLNAKKHSLVQVLKQILNAEEELKRRNGTQGTVNRPAVPLQVETTNDSGSMTRLVTPRMGLDANLAGEND-GVEADDVSNHNVHSRHVFXXXXXXXXXXXXXXXPTYIQHNVVSHPSRTSMGVTGSPSRFAPTGNQGHPGNPPTVSVSGTNFVXXXXXXXXSGGTSVLREAWQPSPWN 847 V+ S++ N + EKRK++V+EKL+ LN KKH LVQVLKQIL AEE+LKR+N TQG RP +PLQV+TTNDSGSMTR+ TPR+G D N +GE + G EADD V H RT++GV GSPSRFAP G QGH +V+VSG +F+ SSPSPAASGGTSV R++ PSPWN Sbjct: 152 VQKSNEENSSSEVEKRKKEVQEKLETLNDKKHGLVQVLKQILKAEEQLKRQNSTQGISGRPPLPLQVDTTNDSGSMTRINTPRVGSDGNPSGETEGGGEADD-----------------------------------VPHSYRTTLGVVGSPSRFAPAG-QGH-----SVTVSGASFIGSSPSPAASGGTSVFRDSRLPSPWN 313 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008254 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008254 ID=g.arboreum_cottongen_reftransV1_0008254; Name=g.arboreum_cottongen_reftransV1_0008254; organism=Gossypium arboreum; type=contig; length=1379bpback to top |