g.arboreum_cottongen_reftransV1_0004382, g.arboreum_cottongen_reftransV1_0004382 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A068V1A0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_87 OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 3.163e-32 Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 2 Query: 191 QREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAAN-----SGTSVKKAPTSDDK 490 Q G+ Q T +Q++YR+IKE+AETYPYVWGSY +VYGG LW YRWRKLR+TEDRVR LQERLRKLVE EE+A+ S T +KAPTS DK Sbjct: 11 QHSGDNQQAATNQADVGWMGAIQQQYRRIKENAETYPYVWGSYIVVYGGFGLWFAYRWRKLRRTEDRVRVLQERLRKLVEAEESASSKVAESSTVGEKAPTSSDK 115
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A059AJZ0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00130 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.643e-31 Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 2 Query: 197 EGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSD 484 E ++ ++ L E+V+E+YRKIKE+AETYPYVW SY LVYGG LWT YRWRKLR+TEDRVR LQERLRKLVE EE+A+ +SV+K S Sbjct: 66 EQNEDKQASSPSAVGLKEMVEEQYRKIKENAETYPYVWASYILVYGGFTLWTTYRWRKLRRTEDRVRVLQERLRKLVEAEESASPVSSVQKGQQSS 161
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: Q9FY88_ARATH (Putative uncharacterized protein At5g09270 OS=Arabidopsis thaliana GN=T5E8_70 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.237e-31 Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 182 MATQREGEASQETTTTPPA-SLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAA----NSGTSVKKAPTSDDK 490 MAT+ G QE+ + A ++E+Y+K+++HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVENE+AA S SV K+ + DK Sbjct: 1 MATEHSGLEDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSSSIPDK 108
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: M1D179_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030782 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.880e-31 Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 2 Query: 182 MATQREGEASQETTTTPPASLSEL------------VQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDK 490 M TQ E Q PP S+ + +QE+Y+K+KE+AETYPYVWGSYT+VYGG LW YRWR+LRKTEDRVR LQ+RLRKLV+ EE+ +S S+ KAP+S DK Sbjct: 1 MVTQENSEVIQ-----PPTSVDKQLESYSYTNWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGFGLWFAYRWRRLRKTEDRVRVLQDRLRKLVQAEESTSS--SITKAPSSCDK 108
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: D7M221_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487736 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.356e-30 Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 182 MATQREGEASQETTTTPPA-SLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAA----NSGTSVKKAPTSDDK 490 MAT++ G QE+ A ++E+Y+K+K+HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVE+E+AA S S+ K+ + DK Sbjct: 1 MATEQSGLEDQESQPNQVAPGFVGAIEEKYKKLKDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVEDEQAAVTASKSAQSMDKSSSISDK 108
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A0B2QJS5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_049223 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.747e-30 Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 170 QRLTMATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDD 487 Q++T +T ++ ++ + + ++++Y K+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRV+ LQERLRK VE EE+++S V+K TS D Sbjct: 9 QQVTSSTPSIQKSEEDQAASTAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQERLRKHVEAEESSSSTKVVEKGSTSSD 114
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: C6T4K8_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.747e-30 Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 170 QRLTMATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDD 487 Q++T +T ++ ++ + + ++++Y K+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRV+ LQERLRK VE EE+++S V+K TS D Sbjct: 9 QQVTSSTPSIQKSEEDQAASTAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQERLRKHVEAEESSSSTKVVEKGSTSSD 114
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A067KLU0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08383 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.153e-29 Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 2 Query: 182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499 MA+Q++ E ++++ P + ++V+++Y+KIKE+AETYPYVWGSY +VYGG LWT YRWRKLRKTEDRVRALQERLRKL E++E+++S T+ +K P+S DK K Sbjct: 1 MASQQQSEKNEQSKA--PEGIIQMVEQQYQKIKENAETYPYVWGSYIVVYGGFTLWTAYRWRKLRKTEDRVRALQERLRKLAESQESSSS-TTTEKIPSSIDKSSK 103
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: R0HA06_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002290mg PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.748e-29 Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 2 Query: 197 EGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEE----AANSGTSVKKAPTSDDK 490 EG+ +Q P ++E+Y+K+K+HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVE+E+ A+ S SV+K+ + DK Sbjct: 10 EGQENQPNQVAP--GFVGAIEEQYKKLKDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVEDEQSAVTASKSAQSVEKSSSISDK 109
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A078I3Z6_BRANA (BnaC02g00950D protein OS=Brassica napus GN=BnaC02g00950D PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.957e-29 Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 2 Query: 182 MATQREGEASQETTTTPPASLSE----LVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAP----TSDDKVP 496 MA+ E + + PP ++ ++E+Y+K+++HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLV++E+AA + + +K+P + DK P Sbjct: 1 MASASEQSGLENQESQPPNQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVQDEQAAVTASKSEKSPGKSSSVSDKTP 113 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004382 ID=g.arboreum_cottongen_reftransV1_0004382; Name=g.arboreum_cottongen_reftransV1_0004382; organism=Gossypium arboreum; type=contig; length=639bpback to top |