g.arboreum_cottongen_reftransV1_0004382, g.arboreum_cottongen_reftransV1_0004382 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004382
Unique Nameg.arboreum_cottongen_reftransV1_0004382
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length639
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0004382:1..639 .
Chr10:76266450..76267209 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A068V1A0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_87 OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.163e-32
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  191 QREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAAN-----SGTSVKKAPTSDDK 490
            Q  G+  Q  T          +Q++YR+IKE+AETYPYVWGSY +VYGG  LW  YRWRKLR+TEDRVR LQERLRKLVE EE+A+     S T  +KAPTS DK
Sbjct:   11 QHSGDNQQAATNQADVGWMGAIQQQYRRIKENAETYPYVWGSYIVVYGGFGLWFAYRWRKLRRTEDRVRVLQERLRKLVEAEESASSKVAESSTVGEKAPTSSDK 115          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A059AJZ0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00130 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.643e-31
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  197 EGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSD 484
            E    ++ ++     L E+V+E+YRKIKE+AETYPYVW SY LVYGG  LWT YRWRKLR+TEDRVR LQERLRKLVE EE+A+  +SV+K   S 
Sbjct:   66 EQNEDKQASSPSAVGLKEMVEEQYRKIKENAETYPYVWASYILVYGGFTLWTTYRWRKLRRTEDRVRVLQERLRKLVEAEESASPVSSVQKGQQSS 161          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: Q9FY88_ARATH (Putative uncharacterized protein At5g09270 OS=Arabidopsis thaliana GN=T5E8_70 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.237e-31
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 2
Query:  182 MATQREGEASQETTTTPPA-SLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAA----NSGTSVKKAPTSDDK 490
            MAT+  G   QE+  +  A      ++E+Y+K+++HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVENE+AA     S  SV K+ +  DK
Sbjct:    1 MATEHSGLEDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSSSIPDK 108          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: M1D179_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030782 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.880e-31
Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  182 MATQREGEASQETTTTPPASLSEL------------VQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDK 490
            M TQ   E  Q     PP S+ +             +QE+Y+K+KE+AETYPYVWGSYT+VYGG  LW  YRWR+LRKTEDRVR LQ+RLRKLV+ EE+ +S  S+ KAP+S DK
Sbjct:    1 MVTQENSEVIQ-----PPTSVDKQLESYSYTNWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGFGLWFAYRWRRLRKTEDRVRVLQDRLRKLVQAEESTSS--SITKAPSSCDK 108          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: D7M221_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487736 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.356e-30
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 2
Query:  182 MATQREGEASQETTTTPPA-SLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAA----NSGTSVKKAPTSDDK 490
            MAT++ G   QE+     A      ++E+Y+K+K+HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVE+E+AA     S  S+ K+ +  DK
Sbjct:    1 MATEQSGLEDQESQPNQVAPGFVGAIEEKYKKLKDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVEDEQAAVTASKSAQSMDKSSSISDK 108          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A0B2QJS5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_049223 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.747e-30
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 2
Query:  170 QRLTMATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDD 487
            Q++T +T    ++ ++   +      + ++++Y K+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRV+ LQERLRK VE EE+++S   V+K  TS D
Sbjct:    9 QQVTSSTPSIQKSEEDQAASTAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQERLRKHVEAEESSSSTKVVEKGSTSSD 114          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: C6T4K8_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.747e-30
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 2
Query:  170 QRLTMATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDD 487
            Q++T +T    ++ ++   +      + ++++Y K+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRV+ LQERLRK VE EE+++S   V+K  TS D
Sbjct:    9 QQVTSSTPSIQKSEEDQAASTAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQERLRKHVEAEESSSSTKVVEKGSTSSD 114          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A067KLU0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08383 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.153e-29
Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 2
Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MA+Q++ E ++++    P  + ++V+++Y+KIKE+AETYPYVWGSY +VYGG  LWT YRWRKLRKTEDRVRALQERLRKL E++E+++S T+ +K P+S DK  K
Sbjct:    1 MASQQQSEKNEQSKA--PEGIIQMVEQQYQKIKENAETYPYVWGSYIVVYGGFTLWTAYRWRKLRKTEDRVRALQERLRKLAESQESSSS-TTTEKIPSSIDKSSK 103          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: R0HA06_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002290mg PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-29
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  197 EGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEE----AANSGTSVKKAPTSDDK 490
            EG+ +Q     P       ++E+Y+K+K+HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLVE+E+    A+ S  SV+K+ +  DK
Sbjct:   10 EGQENQPNQVAP--GFVGAIEEQYKKLKDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVEDEQSAVTASKSAQSVEKSSSISDK 109          
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A078I3Z6_BRANA (BnaC02g00950D protein OS=Brassica napus GN=BnaC02g00950D PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.957e-29
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  182 MATQREGEASQETTTTPPASLSE----LVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAP----TSDDKVP 496
            MA+  E    +   + PP  ++      ++E+Y+K+++HAE YPYVWGSYT+VYGGL LWT YRWRKLR+TEDRVR LQ +LRKLV++E+AA + +  +K+P    +  DK P
Sbjct:    1 MASASEQSGLENQESQPPNQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVQDEQAAVTASKSEKSPGKSSSVSDKTP 113          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068V1A0_COFCA3.163e-3259.05Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A059AJZ0_EUCGR5.643e-3161.46Uncharacterized protein (Fragment) OS=Eucalyptus g... [more]
Q9FY88_ARATH7.237e-3156.48Putative uncharacterized protein At5g09270 OS=Arab... [more]
M1D179_SOLTU7.880e-3154.78Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
D7M221_ARALL1.356e-3055.56Putative uncharacterized protein OS=Arabidopsis ly... [more]
A0A0B2QJS5_GLYSO4.747e-3052.83Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
C6T4K8_SOYBN4.747e-3052.83Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A067KLU0_JATCU1.153e-2958.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
R0HA06_9BRAS1.748e-2955.88Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A078I3Z6_BRANA1.957e-2949.56BnaC02g00950D protein OS=Brassica napus GN=BnaC02g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availablePANTHERPTHR36794:SF1SUBFAMILY NOT NAMEDcoord: 1..111
NoneNo IPR availablePANTHERPTHR36794FAMILY NOT NAMEDcoord: 1..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..114
NoneNo IPR availableTMHMMTMhelixcoord: 47..69

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004382 ID=g.arboreum_cottongen_reftransV1_0004382; Name=g.arboreum_cottongen_reftransV1_0004382; organism=Gossypium arboreum; type=contig; length=639bp
ATTTTATTTATTTTTCCGCCGCCGCCATCTCCATTTCCATCTTCGTCGGT
TTTTTTTACTGTTTCTTCTTCGTCTTTCTCGAGCTCCGGCCACGCGCTCG
TGTCAGTGAGTGTCGCGGTTTGGCGCCGTAAACGACTAGTCCGAGCAACC
GAGGGGTTTGATAATCATTCAAAGGCTGACAATGGCGACTCAGCGAGAAG
GGGAAGCGTCTCAGGAAACTACAACTACTCCGCCGGCTAGCCTGTCGGAA
TTGGTGCAGGAAAGATATCGGAAAATCAAGGAGCACGCTGAAACGTATCC
TTATGTATGGGGGTCTTACACGCTTGTTTATGGCGGTTTGGCACTTTGGA
CTATTTACAGATGGAGGAAACTTCGTAAGACTGAGGATCGAGTGCGAGCC
CTTCAAGAAAGACTCCGGAAGCTTGTCGAAAATGAAGAAGCAGCAAACTC
TGGTACATCTGTTAAAAAGGCTCCAACCTCTGATGATAAAGTTCCCAAGT
AGTTATACGTTAAAAGTTTAGTTTCCCTTTTTATGTAGGAAAAAGAAAGT
TCACATTCAGTTTGAGAATGCATTATTAAGGTTTTTGATGAACTAGCTAG
TATTGATGAAGATAATGTATGAATTTTGGGAGAAAAAAA
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