g.arboreum_cottongen_reftransV1_0021276, g.arboreum_cottongen_reftransV1_0021276 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: Q2HVX3_MEDTR (Asp/Glu racemase OS=Medicago truncatula GN=MTR_2g103300 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 4.878e-82 Identity = 118/191 (61.78%), Postives = 163/191 (85.34%), Query Frame = -1 Query: 364 RPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKS 936 R + S +V+ I+ Q+LR KR+FLE SGARCIVMPC++S++W++++S C +PF H+ +CVA+ELKEAKLKP++AGS +RIGVL+T T+A Y++KLQN+GFEV+LPD+ TMEH ++PA E+ +++D+EGA NLLRIA+QVLL+RAVN VILASDE++++LP +DPLLKKC+DPMDALAR+TIKW +S Sbjct: 127 RSLESFKVDSSQIV-QSLRNKRVFLENSGARCIVMPCNVSHSWYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQNEGFEVILPDRATMEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILASDEMRDVLPHDDPLLKKCIDPMDALARSTIKWVRS 316
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2QEY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G130200 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.353e-81 Identity = 117/179 (65.36%), Postives = 155/179 (86.59%), Query Frame = -1 Query: 361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897 I++NLR KR+FLEKSGA CIVMPCHIS++WHDE+ + C + H+ +CVARELKEA LKP++ GS +RIGVL+T T+ YQ+KLQ +GFEVV+PDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VI+ASD+++++LPR+DPLLKKC+DPMDALAR+TIKWA+ A Sbjct: 145 IVENLRSKRVFLEKSGAHCIVMPCHISHSWHDEVFKGCSVHSLHMAECVARELKEAGLKPLETGSPLRIGVLATDATLKAGFYQEKLQIEGFEVVMPDKATMEHAVIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVIIASDDMRDVLPRDDPLLKKCIDPMDALARSTIKWAQQA 323
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0MPD8_GOSAR (Aspartate racemase OS=Gossypium arboreum GN=F383_29521 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.148e-81 Identity = 118/181 (65.19%), Postives = 157/181 (86.74%), Query Frame = -1 Query: 355 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 897 I++NL KR+FLEKSGA+CIV+PCHIS++WHDE+ + C +P H+ +CV+RELKEAKLKP++AGS +RIGVL+T T+ YQ+KLQN+GFEVVLPDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VILAS+++ ++LPR+DPLLKKC+DPMDAL +TIKWA+ A K Sbjct: 148 IVENLLSKRVFLEKSGAQCIVVPCHISHSWHDEVFKGCSIPSLHMAECVSRELKEAKLKPLEAGSPLRIGVLATDVTLKAGFYQEKLQNEGFEVVLPDKATMEHTVIPAIDAINRKDMEGARNLLRIALQVLLVRAVNTVILASNDMCDLLPRDDPLLKKCIDPMDALVMSTIKWAQQAVK 328
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: I1M5S1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.971e-81 Identity = 112/179 (62.57%), Postives = 156/179 (87.15%), Query Frame = -1 Query: 361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897 I+Q LR KR+FLE SG CIVMPC++S++W++++SE C +P FH+ +CVA+ELKEAKLKP++AGS +RIGVL+T T+A Y++KLQN+GF+VVLPD+ TMEH ++PA+E+ N++D+EGA NLLRIA+QVLL+RA N +ILASD+++++LP +DPL+KKC+DPMDALAR+TIKW KS+ Sbjct: 147 IVQTLRNKRVFLENSGTSCIVMPCNVSHSWYEQVSEGCSVPVFHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQNEGFDVVLPDRATMEHTVIPAIEALNRKDMEGACNLLRIALQVLLVRAANFIILASDDMRDLLPPDDPLIKKCIDPMDALARSTIKWVKSS 325
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0Q364_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_04724 PE=4 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 9.510e-81 Identity = 117/179 (65.36%), Postives = 155/179 (86.59%), Query Frame = -1 Query: 361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897 I++NLR KR+FL+KSGA CIVMPCHIS++WHDE+ + C + H+ +CVARELKEA LKP++AGS +RIGVL+T T+ YQ+KLQ +GFEVV+PDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VI+ASD++ ++LPR+DPLLKKC+DPMDALAR+TIKWA+ A Sbjct: 145 IVKNLRSKRVFLKKSGAHCIVMPCHISHSWHDEVFKGCSVHSLHMAECVARELKEAGLKPLEAGSPLRIGVLATDATLKAGFYQEKLQIEGFEVVMPDKATMEHAVIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVIIASDDMCDVLPRDDPLLKKCIDPMDALARSTIKWAQQA 323
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.411e-13 Identity = 42/165 (25.45%), Postives = 84/165 (50.91%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++A+ ++I ++ +P + + A+++KE K + G+L+T TI Y+++ G E++ P ++ + ++ E +++ R LL ++L R +I E+ +L ++D L +DPMD +A +K A Sbjct: 70 LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL-KQDDLKVPLIDPMDVIAEVAVKVA 225
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 3.086e-9 Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++ + I S + P + + A+ ++E L+ ++G+L+T TI Y + L +G + +P+K+ ++ E ++E R LL + + L R +I E+ +L D L +DPMD +A +K A Sbjct: 72 LEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLR--------KVGLLATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELL-LKVAKKLERRSEGIIAGCTEVSVVLKPGD-LTVPLIDPMDVIAERAVKLA 226
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: YPNL_PECCC (Uncharacterized protein in pnlA 3'region (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.027e-7 Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = -1 Query: 373 WHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPRE---DPLLKKCMDPMDALARTTIKW 810 W +++ + C I D + +K A ++ R+G+L+T T+ YQ L + PD + +H +M ++ ++ DI GA +LL LL V +IL EL IL +E P + +D + L + T++W Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLITDNIDCYTPD-DADQHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQEVRTSP--QHYVDATEELIKKTVEW 138 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021276 ID=g.arboreum_cottongen_reftransV1_0021276; Name=g.arboreum_cottongen_reftransV1_0021276; organism=Gossypium arboreum; type=contig; length=957bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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