g.arboreum_cottongen_reftransV1_0021276, g.arboreum_cottongen_reftransV1_0021276 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021276
Unique Nameg.arboreum_cottongen_reftransV1_0021276
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length957
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0021276:1..957 .
Chr11:56984817..56986117 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: Q2HVX3_MEDTR (Asp/Glu racemase OS=Medicago truncatula GN=MTR_2g103300 PE=4 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 4.878e-82
Identity = 118/191 (61.78%), Postives = 163/191 (85.34%), Query Frame = -1
Query:  364 RPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKS 936
            R + S +V+   I+ Q+LR KR+FLE SGARCIVMPC++S++W++++S  C +PF H+ +CVA+ELKEAKLKP++AGS +RIGVL+T  T+A   Y++KLQN+GFEV+LPD+ TMEH ++PA E+ +++D+EGA NLLRIA+QVLL+RAVN VILASDE++++LP +DPLLKKC+DPMDALAR+TIKW +S
Sbjct:  127 RSLESFKVDSSQIV-QSLRNKRVFLENSGARCIVMPCNVSHSWYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQNEGFEVILPDRATMEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILASDEMRDVLPHDDPLLKKCIDPMDALARSTIKWVRS 316          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2QEY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G130200 PE=4 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.353e-81
Identity = 117/179 (65.36%), Postives = 155/179 (86.59%), Query Frame = -1
Query:  361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897
            I++NLR KR+FLEKSGA CIVMPCHIS++WHDE+ + C +   H+ +CVARELKEA LKP++ GS +RIGVL+T  T+    YQ+KLQ +GFEVV+PDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VI+ASD+++++LPR+DPLLKKC+DPMDALAR+TIKWA+ A
Sbjct:  145 IVENLRSKRVFLEKSGAHCIVMPCHISHSWHDEVFKGCSVHSLHMAECVARELKEAGLKPLETGSPLRIGVLATDATLKAGFYQEKLQIEGFEVVMPDKATMEHAVIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVIIASDDMRDVLPRDDPLLKKCIDPMDALARSTIKWAQQA 323          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0MPD8_GOSAR (Aspartate racemase OS=Gossypium arboreum GN=F383_29521 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.148e-81
Identity = 118/181 (65.19%), Postives = 157/181 (86.74%), Query Frame = -1
Query:  355 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 897
            I++NL  KR+FLEKSGA+CIV+PCHIS++WHDE+ + C +P  H+ +CV+RELKEAKLKP++AGS +RIGVL+T  T+    YQ+KLQN+GFEVVLPDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VILAS+++ ++LPR+DPLLKKC+DPMDAL  +TIKWA+ A K
Sbjct:  148 IVENLLSKRVFLEKSGAQCIVVPCHISHSWHDEVFKGCSIPSLHMAECVSRELKEAKLKPLEAGSPLRIGVLATDVTLKAGFYQEKLQNEGFEVVLPDKATMEHTVIPAIDAINRKDMEGARNLLRIALQVLLVRAVNTVILASNDMCDLLPRDDPLLKKCIDPMDALVMSTIKWAQQAVK 328          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: I1M5S1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.971e-81
Identity = 112/179 (62.57%), Postives = 156/179 (87.15%), Query Frame = -1
Query:  361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897
            I+Q LR KR+FLE SG  CIVMPC++S++W++++SE C +P FH+ +CVA+ELKEAKLKP++AGS +RIGVL+T  T+A   Y++KLQN+GF+VVLPD+ TMEH ++PA+E+ N++D+EGA NLLRIA+QVLL+RA N +ILASD+++++LP +DPL+KKC+DPMDALAR+TIKW KS+
Sbjct:  147 IVQTLRNKRVFLENSGTSCIVMPCNVSHSWYEQVSEGCSVPVFHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKLQNEGFDVVLPDRATMEHTVIPAIEALNRKDMEGACNLLRIALQVLLVRAANFIILASDDMRDLLPPDDPLIKKCIDPMDALARSTIKWVKSS 325          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0Q364_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_04724 PE=4 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.510e-81
Identity = 117/179 (65.36%), Postives = 155/179 (86.59%), Query Frame = -1
Query:  361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897
            I++NLR KR+FL+KSGA CIVMPCHIS++WHDE+ + C +   H+ +CVARELKEA LKP++AGS +RIGVL+T  T+    YQ+KLQ +GFEVV+PDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VI+ASD++ ++LPR+DPLLKKC+DPMDALAR+TIKWA+ A
Sbjct:  145 IVKNLRSKRVFLKKSGAHCIVMPCHISHSWHDEVFKGCSVHSLHMAECVARELKEAGLKPLEAGSPLRIGVLATDATLKAGFYQEKLQIEGFEVVMPDKATMEHAVIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVIIASDDMCDVLPRDDPLLKKCIDPMDALARSTIKWAQQA 323          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.411e-13
Identity = 42/165 (25.45%), Postives = 84/165 (50.91%), Query Frame = -1
Query:  370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864
            LE+ GA  I+MPC+ ++A+ ++I ++  +P   + +  A+++KE   K        + G+L+T  TI    Y+++    G E++ P ++  + ++    E     +++  R LL    ++L  R    +I    E+  +L ++D L    +DPMD +A   +K A
Sbjct:   70 LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL-KQDDLKVPLIDPMDVIAEVAVKVA 225          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.086e-9
Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = -1
Query:  370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864
            LE+ GA  I+MPC+ ++ +   I  S + P   + +  A+ ++E  L+        ++G+L+T  TI    Y + L  +G  + +P+K+    ++    E     ++E  R LL + +   L R    +I    E+  +L   D L    +DPMD +A   +K A
Sbjct:   72 LEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLR--------KVGLLATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELL-LKVAKKLERRSEGIIAGCTEVSVVLKPGD-LTVPLIDPMDVIAERAVKLA 226          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: YPNL_PECCC (Uncharacterized protein in pnlA 3'region (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.027e-7
Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = -1
Query:  373 WHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPRE---DPLLKKCMDPMDALARTTIKW 810
            W +++ + C      I D   + +K A        ++ R+G+L+T  T+    YQ  L     +   PD +  +H +M ++ ++   DI GA +LL      LL   V  +IL   EL  IL +E    P  +  +D  + L + T++W
Sbjct:    1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLITDNIDCYTPD-DADQHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQEVRTSP--QHYVDATEELIKKTVEW 138          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q2HVX3_MEDTR4.878e-8261.78Asp/Glu racemase OS=Medicago truncatula GN=MTR_2g1... [more]
A0A0D2QEY5_GOSRA1.353e-8165.36Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MPD8_GOSAR3.148e-8165.19Aspartate racemase OS=Gossypium arboreum GN=F383_2... [more]
I1M5S1_SOYBN5.971e-8162.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B0Q364_GOSAR9.510e-8165.36Putative amino-acid racemase OS=Gossypium arboreum... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RACD_PYRHO9.411e-1325.45Aspartate racemase OS=Pyrococcus horikoshii (strai... [more]
RACD_THEK83.086e-926.06Aspartate racemase OS=Thermococcus sp. (strain KS-... [more]
YPNL_PECCC2.027e-726.17Uncharacterized protein in pnlA 3'region (Fragment... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001920Asp/Glu racemaseGENE3D3.40.50.1860coord: 1..55
e-value: 1.2E-15
score: 57.7
IPR001920Asp/Glu racemaseGENE3D3.40.50.1860coord: 59..152
e-value: 7.8E-14
score: 51.5
IPR001920Asp/Glu racemaseSUPERFAMILY53681Aspartate/glutamate racemasecoord: 64..172
IPR001920Asp/Glu racemaseSUPERFAMILY53681Aspartate/glutamate racemasecoord: 4..51
IPR015942Asp/Glu/hydantoin racemasePFAMPF01177Asp_Glu_racecoord: 3..168
e-value: 1.8E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR21198GLUTAMATE RACEMASEcoord: 1..181
NoneNo IPR availablePANTHERPTHR21198:SF7ASPARTATE-GLUTAMATE RACEMASE-LIKE PROTEINcoord: 1..181

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021276 ID=g.arboreum_cottongen_reftransV1_0021276; Name=g.arboreum_cottongen_reftransV1_0021276; organism=Gossypium arboreum; type=contig; length=957bp
GGCGACTTGAGATGGCATCTTTTAAACATATTTCAACACGAATTGTGTTG
AATATGAAGAACATCTACTTTACAAAAATTTCATATCATCAAATGCAAAT
TAAGCCTCTGTCCCTTTTCTGTCTTTTCTTTGTATACATTCATACAGTGA
TCATTTAATTTGCTTCTAACATTATCGGTTCAGCCTTATCTTATTTGGTA
CTGTTGTTGTTGCTGTGTAAGCCTTGTCTATTTTTTTTTATTGACACCAT
AGTATGAACAAGATGTTGTGCACTTTCGATAGGCAAATATACCCTTACAA
GTTACAAGACAGCAAGAGTTTCCATGCTTGTATAGTTCAAGTTTTCCTAT
GTACCTTCTTTGCAGATTTAGCCCATTTTATAGTTGTTCTGGCTAAAGCA
TCCATGGGATCCATACATTTTTTAAGAAGAGGATCCTCTCGAGGTAAAAT
GTTCTGTAGTTCATCCGAAGCAAGGATGACAACATTCACAGCTCTAATTA
AAAGAACCTGGATTGCAATTCTCAGCAAGTTTCGAGCCCCTTCTATGTCC
CTTTGGTTCCATGATTCAACTGCTGGCATTAGAATATGTTCCATCGTTTC
CTTGTCTGGCAAAACCACTTCAAAACCCTGATTCTGTAATTTTTGTTGAT
ATGGAGCAACAGCTATGGTTTCACATGTGGAAAGTACCCCAATTCGAACA
CTGCTCCCAGCATCCATTGGCTTCAATTTCGCTTCCTTGAGCTCCCTGGC
AACACAGTCACCGATGTGAAAAAAGGGCAGTAAGCAGCTCTCAGATATCT
CATCATGCCATGCATTTGAGATATGGCATGGCATCACAATGCAACGAGCT
CCAGATTTCTCGAGAAATATTCTTTTCTGCCTCAGATTCTGGATGATAAT
ATGTTCACCATTTACTTCCGATGAATGAACCGGACGGCGGCCGCCGTCTA
GGGCCGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001920Asp/Glu_race
IPR015942Asp/Glu/hydantoin_racemase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006807nitrogen compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016855racemase and epimerase activity, acting on amino acids and derivatives
GO:0036361racemase activity, acting on amino acids and derivatives