g.arboreum_cottongen_reftransV1_0021276, g.arboreum_cottongen_reftransV1_0021276 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A5BHI0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011681 PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 1.259e-87 Identity = 124/186 (66.67%), Postives = 163/186 (87.63%), Query Frame = -1 Query: 340 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 897 I++NLR KR FLE+SGARCIVMPCH+++AWH E+S+ C LPF H+G+CVA ELK+AK KP++AGS+VRIGVL+ ET+ YQ+KLQ+QGFEVVLPD TMEHI++PA+E+ +++D+EGARNLLRIA+ + L+RAVN+VILASDE+Q++LPR+DPL KKC++PMDALAR+TI WAKS ++VHRK Sbjct: 139 IVENLRCKRAFLEQSGARCIVMPCHLAHAWHSEVSKGCPLPFLHVGECVASELKKAKFKPLEAGSNVRIGVLAPGETLMAGFYQEKLQSQGFEVVLPDMATMEHIVVPAIEALHRKDMEGARNLLRIAVHIFLMRAVNIVILASDEMQDLLPRDDPLSKKCINPMDALARSTIGWAKSIEEVHRKA 324
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067KJD4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13300 PE=4 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 6.954e-87 Identity = 125/182 (68.68%), Postives = 158/182 (86.81%), Query Frame = -1 Query: 352 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKV 897 +I+NL+ KR FLE SGA C+V+PCH+S+AWH +IS+ CLLPFFH+G+CVA EL+EAKLKP++AGS VRIG+L++ T+ YQ+KLQNQGFEVVLPDK TM+HIL+PAVE+ +RDIEGARNLLR+AIQ+LL+RA N VILASDEL+ +LPR++PLLKKC+DPMD+LAR TI+WAK KV Sbjct: 147 VIENLQSKRKFLELSGACCLVLPCHVSHAWHGKISQGCLLPFFHVGECVASELQEAKLKPLEAGSDVRIGILASNATLTAGFYQEKLQNQGFEVVLPDKATMDHILIPAVEALTRRDIEGARNLLRVAIQILLMRAANTVILASDELRGLLPRDEPLLKKCIDPMDSLARATIRWAKHESKV 328
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: M5VR23_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008759mg PE=4 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.098e-86 Identity = 127/179 (70.95%), Postives = 158/179 (88.27%), Query Frame = -1 Query: 361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897 II++L +KR FLE SGARCIVMPCH+S+AWHD+ISE C L F H+G+CVAREL+EAKLKP++ GS+VRIGVL+ T+ YQ+KLQ+QGFEVV+PDKETMEH+++PAVE+ +RD+EGARNLLRIA+QVLL+RAVN VI+ASDELQ +LPR+DPLLKKC+DPMDALAR+TIKWA + Sbjct: 138 IIESLCRKRAFLEHSGARCIVMPCHLSHAWHDQISEDCSLLFLHVGECVARELREAKLKPLENGSNVRIGVLAADATLMAGFYQEKLQSQGFEVVVPDKETMEHVVIPAVEAMKRRDMEGARNLLRIAVQVLLVRAVNTVIIASDELQGVLPRDDPLLKKCIDPMDALARSTIKWANAT 316
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: B9RV29_RICCO (Racemase and epimerase, acting on amino acids and derivatives, putative OS=Ricinus communis GN=RCOM_0898340 PE=4 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 2.705e-86 Identity = 121/181 (66.85%), Postives = 160/181 (88.40%), Query Frame = -1 Query: 355 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 897 I++NLR KR+FLE+SGARCIVMPCHIS++WH+++S+ C + F H+G+CVARELKEAKLKP++AGS +RIGVL+ T+ YQ+KLQ++GFEVVLPDK TMEH ++PA+ + N++D+EGARNLLRIA+QVLL+RAVN VILASD+++++LP+ DPLLKKC+DPMDAL R TIKWAK+A+K Sbjct: 148 IVENLRSKRVFLERSGARCIVMPCHISHSWHEQVSKGCSIHFLHMGECVARELKEAKLKPLEAGSPLRIGVLAANATLTAGFYQEKLQSEGFEVVLPDKATMEHTIIPAIGALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMRDLLPQNDPLLKKCIDPMDALVRATIKWAKAAEK 328
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: B9GWD2_POPTR (Aspartate-glutamate racemase family protein OS=Populus trichocarpa GN=POPTR_0003s06030g PE=4 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 3.620e-86 Identity = 124/192 (64.58%), Postives = 166/192 (86.46%), Query Frame = -1 Query: 355 HSSEVNGEH-IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 927 H+ + +H I +NL+ KR+FLEKSG +CIVMPCHI ++WHDE+S+ C LPF H+G+CVARELKEAKLKP++AGS +RIG+L++ T+A YQ+KLQN+GFEVVLPDK TMEH ++PA+E+ ++ D+EGA+NLLRIA+QVLL+RAVN VILAS+E++++LP +DPLLKKC+DPMDALAR+TIKWA++A K Sbjct: 137 HNEKSPSDHSAIAENLQNKRVFLEKSGVQCIVMPCHILHSWHDEVSKGCSLPFLHMGECVARELKEAKLKPLEAGSPLRIGLLASNATLAAGFYQEKLQNEGFEVVLPDKATMEHTIIPAIEALDRNDMEGAQNLLRIALQVLLVRAVNTVILASEEMRDVLPEDDPLLKKCIDPMDALARSTIKWAQAADK 328
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A5AFE5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015733 PE=4 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 9.457e-86 Identity = 122/181 (67.40%), Postives = 156/181 (86.19%), Query Frame = -1 Query: 355 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 897 I+ NL+ KR FLE+SG +CIVMPCHIS++WHDEIS +PF H+G+CVARELK AKLKP++AGS +RIGVL+T T+ YQ+KLQ +GFEVVLPDK TMEH ++PA+E+ N++D+EGARNLLRIA+QVLL+RAVN VILASD++ ++LPR+DPLLKKC+DPMDALAR+TI WA+S +K Sbjct: 148 IVGNLQSKRAFLERSGVQCIVMPCHISHSWHDEISRGXSVPFLHMGECVARELKNAKLKPLEAGSPLRIGVLATNATLTAGFYQEKLQREGFEVVLPDKATMEHTVIPAIEALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMHDLLPRDDPLLKKCVDPMDALARSTIHWAQSVEK 328
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067KLJ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06172 PE=4 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 3.399e-84 Identity = 119/181 (65.75%), Postives = 161/181 (88.95%), Query Frame = -1 Query: 355 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 897 I++NLR KR+FLE+SGARCIVMPCHIS++WHDE S+ C + F H+G+CVARELKEAKLKP++AGS +RIG+L+T ++ YQ+KLQ++GFEVVLPDK TM+H ++PA++ N++DIEGARNLLRIA+Q LL+RAVN+VILASD++ ++LP++DPLLKKC+DP+DALAR+TIKWA++A+ Sbjct: 142 IVENLRGKRVFLERSGARCIVMPCHISHSWHDEASKGCSVHFLHMGECVARELKEAKLKPLEAGSPLRIGLLATNAILSAGFYQEKLQSEGFEVVLPDKATMDHTVIPAIDPLNRKDIEGARNLLRIALQFLLVRAVNIVILASDDIIDLLPQDDPLLKKCIDPIDALARSTIKWAEAAEN 322
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A059AK76_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03052 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.971e-83 Identity = 118/182 (64.84%), Postives = 159/182 (87.36%), Query Frame = -1 Query: 355 IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 900 +I+ NLRQKR+FLEKSGARCIVMPCHIS++WHD+IS C + F ++ +CVA+EL E K+KP++AGS +RIGVL+T + YQ+KL+N+GFEVVLPDK TM+H ++PA+E+ N+ D+EGARNLLRIA+QVLL+RAVN V+LASD+L++ILP++DPLLKKC+DP+DALAR+TIKWAK+ ++ Sbjct: 152 LIVDNLRQKRVFLEKSGARCIVMPCHISHSWHDDISHGCPVSFLNMAECVAKELSEMKMKPLEAGSPLRIGVLTTSAILEAGFYQEKLENEGFEVVLPDKATMDHTIVPAIEASNRDDMEGARNLLRIALQVLLVRAVNTVVLASDDLRDILPQDDPLLKKCIDPVDALARSTIKWAKAVER 333
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0A0KVD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004850 PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 6.148e-83 Identity = 123/202 (60.89%), Postives = 165/202 (81.68%), Query Frame = -1 Query: 358 LDGGRRPV--HSSEVNG--EHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAK 951 D PV + SE G +++++L+ KR FLE SGARCIVMPCHIS+ W++++S+ C + F H+ DCVARELKEAKLKP++AGS +RIGVL+T ++ YQ+KLQN+GFEVVLPDK TMEH ++PA+E+ N++DIEGARNLLRIA+QVLL+RAVN VILASD++++ILP +DPLL++C+DPMDALAR+TI WA+ A+ Sbjct: 126 FDKSSHPVLNYKSEDLGLDSELVVESLKSKRTFLENSGARCIVMPCHISHLWYEDVSKGCPVTFLHMADCVARELKEAKLKPLEAGSPLRIGVLATNAILSAGYYQEKLQNEGFEVVLPDKATMEHTVIPAIEALNRKDIEGARNLLRIALQVLLVRAVNSVILASDDIKDILPLDDPLLRRCIDPMDALARSTINWAQCAE 327
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A061GAR1_THECC (Aspartate-glutamate racemase family OS=Theobroma cacao GN=TCM_028296 PE=4 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 6.454e-83 Identity = 120/179 (67.04%), Postives = 158/179 (88.27%), Query Frame = -1 Query: 361 IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSA 897 I++NL KR+FLEKSGA CIV+PCHIS++WHDE+ + C +P H+G+CVARELKEAKLKP++ GS +RIGVL+T T+ YQ+KLQN+GFEVVLPDK TMEH ++PA+++ N++D+EGARNLLRIA+QVLL+RAVN VILASD+++++LPR+DPL+KKC+DPMDALAR+TIKWA+ A Sbjct: 230 IVENLWSKRVFLEKSGAHCIVVPCHISHSWHDEVFKGCSVPSLHMGECVARELKEAKLKPLETGSPLRIGVLATDATLKEGFYQEKLQNEGFEVVLPDKATMEHTVIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMRDLLPRDDPLVKKCIDPMDALARSTIKWAQQA 408
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.411e-13 Identity = 42/165 (25.45%), Postives = 84/165 (50.91%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++A+ ++I ++ +P + + A+++KE K + G+L+T TI Y+++ G E++ P ++ + ++ E +++ R LL ++L R +I E+ +L ++D L +DPMD +A +K A Sbjct: 70 LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL-KQDDLKVPLIDPMDVIAEVAVKVA 225
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 3.086e-9 Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++ + I S + P + + A+ ++E L+ ++G+L+T TI Y + L +G + +P+K+ ++ E ++E R LL + + L R +I E+ +L D L +DPMD +A +K A Sbjct: 72 LEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLR--------KVGLLATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELL-LKVAKKLERRSEGIIAGCTEVSVVLKPGD-LTVPLIDPMDVIAERAVKLA 226
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: YPNL_PECCC (Uncharacterized protein in pnlA 3'region (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.027e-7 Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = -1 Query: 373 WHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPRE---DPLLKKCMDPMDALARTTIKW 810 W +++ + C I D + +K A ++ R+G+L+T T+ YQ L + PD + +H +M ++ ++ DI GA +LL LL V +IL EL IL +E P + +D + L + T++W Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLITDNIDCYTPD-DADQHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQEVRTSP--QHYVDATEELIKKTVEW 138 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021276 ID=g.arboreum_cottongen_reftransV1_0021276; Name=g.arboreum_cottongen_reftransV1_0021276; organism=Gossypium arboreum; type=contig; length=957bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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