g.arboreum_cottongen_reftransV1_0001990, g.arboreum_cottongen_reftransV1_0001990 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001990
Unique Nameg.arboreum_cottongen_reftransV1_0001990
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length926
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0001990:1..926 .
Chr2:85564345..85565477 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A067LAQ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22912 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.158e-11
Identity = 79/170 (46.47%), Postives = 109/170 (64.12%), Query Frame = -1 
Query:  411 GKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLN 920
            G  S +  A T+  SG+RRS RET SKKNM P S+S TRKSERL+KQT+  +    S        E+ +K+ + SPLRRS+R K  SSS+SSGSK+S+KSL L  TK+K +K+K   +    T E  K E++V ++ +  KKRMDAR Y+ LF++QPK+       ++LN
Sbjct:   24 GNPSTSSRAETSYTSGLRRSGRETPSKKNMIP-SASSTRKSERLDKQTSTPDFKRKS--------ERVEKQSSPSPLRRSERGKKQSSSSSSGSKKSNKSLGLSVTKKKLKKEKSVKQLTLETKEVGKSEKQVVKSVQVGKKRMDARMYRQLFKQQPKEVKFAGNCKELN 184
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 11
Match NameE-valueIdentityDescription
A0A067LAQ5_JATCU1.158e-1146.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001990 ID=g.arboreum_cottongen_reftransV1_0001990; Name=g.arboreum_cottongen_reftransV1_0001990; organism=Gossypium arboreum; type=contig; length=926bp
GCAATATTATTACTTGAGATTTTTGAAGAAGCAACAGAATCAATGTCTAT
ATCATGACATTTGTTTTCAGAAGGCATGACCATCTCCACACTGATATCAC
AACCAAGGACCCCTCCTGGCATAATGGATTTTGCAAAATGAGGACTTTGC
AGATTATCCTGGGCAGCCTTTTCAGCATTATCATTCATTTCTTCTGTTAT
CAAACCATTCTTAGGAATTTGTAGATCACCCCCATTTGAAGAGATATCCT
TGCAGCTATCCTTTTCGCTAGTGAGAAACAAGTTATGCTCATTCTTTCCT
TTAAGTGCTTCCTCCGCAGGTTGACTTGTACTTGTCACCTCAGTCCTTTC
ATGACTTCTCTCAATGAATTCTTCTAAAACGTCCTCCTCCCTCCTTCCAC
TATTAGTTCCATTCAGATCTTCGTTACGATCTGTTTCATCAGCTTTCTTG
GGTTGTTTCCTGAACAATGCTTTGTAGGCACGAGCATCCATTCTTTTCTT
CTGTTTCTCATTGGCTTGCTCAACTTCTCGCTCAATTTTGTTATCTTCTA
CAGTTCCTGTTAATTGTTTCACGCTCTTCTTTTTTTTCTCCTTCTTCCTT
TTCGTATTCAACAGATCCAGGCTCTTATCAGACCTCTTTGAACCTGAAGA
AGCAGATGAGGAGGGCATCTTAACCCTGTCAGATCTCCTCAAAGGACTCG
CATTCTTCTTCTTCTTTTTCTTCTCAATTCGCTCAGATTTCCTCTTACCT
GAAGAAGTCGTTGAATTCAAATTTGCAGTCTGCTTCTCAAGACGTTCCGA
CTTCCGTGTACCAGAAGAACTTGGTGGAGTCATGTTTTTCTTAGATATGG
TTTCCCTAGGTGACCTCCTAACACCAGATGCTTCTGCTGTAGCAGCACCT
AAATTCACTGACTTTTTACCTCTATT
back to top