g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003584
Unique Nameg.arboreum_cottongen_reftransV1_0003584
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length878
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0003584:2..878 .
Chr9:64413441..64415191 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D3DWU9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.931e-92
Identity = 139/190 (73.16%), Postives = 159/190 (83.68%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPES-PQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q   Q  ++ ++ ES PQ  N+K ++EK V ++ ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMATPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEQAEAQQTAAESPPQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078G8M5_BRANA (BnaA09g45050D protein OS=Brassica napus GN=BnaA09g45050D PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.069e-91
Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q   ++ ++ ESP Q  N++ ++EK V    ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEAQQTAAESPLQESNTRAESEKAVELRNEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 235          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078D3C8_BRANA (BnaC08g37880D protein OS=Brassica napus GN=BnaC08g37880D PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91
Identity = 138/190 (72.63%), Postives = 160/190 (84.21%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFP+YV+KYN++Q   +  ++ ++PESP Q  N+K ++EK V ++ ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPDYVEKYNQEQLAEKAEAQQTAPESPLQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: K7S6F2_9ERIC (Ubiquitin conjugating enzyme J2 OS=Camellia oleifera PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91
Identity = 140/191 (73.30%), Postives = 155/191 (81.15%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYP+KPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TT AEKQRLAK+SL+FNCKNPTFRK+FPEYV+KY +QQ   Q + E  S    Q E  +P  +K   S+ ED+ KV        RRKQ FPTWM+ LLVS+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPFKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTVAEKQRLAKSSLAFNCKNPTFRKMFPEYVEKYEQQQLSEQPVPEQVSTTPTQQEGHRPLLDKTGNSTQEDLNKVEALRDPRNRRKQSFPTWMLLLLVSIFGVVMALPLLQL 239          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: D7KFD7_ARALL (Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyrata subsp. lyrata GN=UBC34 PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.706e-91
Identity = 137/189 (72.49%), Postives = 158/189 (83.60%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ   Q  ++ ++ ESPQ  ++K ++EK +  + ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQAATQVTTSESPQKSDTKVESEKTIDPTKEDSEGGLKERKKNKKQGLPAWIILLLVSVFGVVMALPLLQL 237          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.892e-8
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVN----TTAAEKQRLAK 268
            + GG ++  I F P+YP+KPP +T  T   +    +Q  ICL   D   ++W+P  ++S +L  + S + D +P     GS+     T  AE  R+A+
Sbjct:   99 YEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 193          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.621e-7
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217
            FAGG +   I FPP+YP+KPP +   T    PN    +   ICL   D   E W+P  +VS +L  + S + D +P
Sbjct:   45 FAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPN--INSNGSICL---DILKEQWSPALTVSKVLLSICSLLTDPNP 115          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.065e-7
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVNT----TAAEKQRLAK 268
            + GG ++  I F PEYP+KPP +T  T   +    +Q  ICL   D   ++W+P  ++S +L  + S + D +P     GS+ T       E  R+A+
Sbjct:  130 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC5B_ORYSJ (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.871e-7
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217
            +AGG +   I FPP+YP+KPP + + T    PN    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:   45 YAGGVFLVTIHFPPDYPFKPPKVALKTKVFHPN--INSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 115          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3DWU9_BRAOL6.931e-9273.16Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078G8M5_BRANA1.069e-9173.26BnaA09g45050D protein OS=Brassica napus GN=BnaA09g... [more]
A0A078D3C8_BRANA1.180e-9172.63BnaC08g37880D protein OS=Brassica napus GN=BnaC08g... [more]
K7S6F2_9ERIC1.180e-9173.30Ubiquitin conjugating enzyme J2 OS=Camellia oleife... [more]
D7KFD7_ARALL1.706e-9172.49Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyr... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
UB2E2_MOUSE9.892e-831.63Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UBC30_ARATH4.621e-738.16Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis ... [more]
UBCD2_DROME5.065e-731.63Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC5B_ORYSJ8.871e-735.53Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 10..112
e-value: 2.6E-13
score: 49.4
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..81
NoneNo IPR availablePANTHERPTHR24067:SF42UBIQUITIN-CONJUGATING ENZYME E2 J2coord: 1..100
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 1..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..156
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 157..158
NoneNo IPR availableTMHMMTMhelixcoord: 134..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bp
TTTTGCAGGTGGGTATTATTATGGAAAGATCAAGTTCCCTCCAGAGTATC
CCTACAAACCTCCTGGAATCACGATGATCACCCCCAATGGACGGTTTATG
ACACAGAAGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTG
GAATCCAATGTGGTCTGTATCAAGCATACTCACAGGGCTTCTATCTTTCA
TGATGGATAACAGTCCTACCACTGGCAGTGTAAACACTACAGCTGCTGAG
AAGCAACGCCTGGCAAAAACATCCCTTTCTTTTAATTGTAAAAACCCCAC
ATTCAGAAAATTGTTTCCAGAGTATGTCGATAAGTACAACAAGCAGCAGC
AGCTCATTTCAGAGCATTCCTCACCTGAATCACCTCAAGGAGAAAATTCA
AAACCCAAGACGGAAAAACTTGTAGGCTCTTCAGGGGAAGATGTTAAAAA
AGTCATTCCAAGAAGAAAACAGCCGTTCCCAACATGGATGATGTTTTTGC
TAGTTTCCGTCTTTGGAATTGTGATGGCATTGCCGTTGCTTCAACTTTAG
TATGAACTGGGGTACAGCATGGCAAAATTCGGTTATGGTTAGTGATATAT
ACAGTGTCTAGTTGAGGGAATCCTTTTTCAATGCTCCTTAGGGTTGTGAT
GTTCTGAAAAAAATGTATAGGGGAGTTTGATACAAGATTCCTAGGAGAGT
GAGTTGGATCTTGACTGATTATTTCATCTATGTGAAAGTTGGTGTTGGTA
ATTTAACGAGTGAGATTGAAAAAATACATGGCTTGAAATGTTGGTCGATT
TTTAGTTCGACTGTCATAAGTTTTTATACATTTATCCTCTTTATGCTCTG
AAATTAGCACAGTATATTTACCGATTCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD