g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D3DWU9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 6.931e-92 Identity = 139/190 (73.16%), Postives = 159/190 (83.68%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPES-PQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q Q ++ ++ ES PQ N+K ++EK V ++ ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMATPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEQAEAQQTAAESPPQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078G8M5_BRANA (BnaA09g45050D protein OS=Brassica napus GN=BnaA09g45050D PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.069e-91 Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q ++ ++ ESP Q N++ ++EK V ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEAQQTAAESPLQESNTRAESEKAVELRNEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 235
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078D3C8_BRANA (BnaC08g37880D protein OS=Brassica napus GN=BnaC08g37880D PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91 Identity = 138/190 (72.63%), Postives = 160/190 (84.21%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFP+YV+KYN++Q + ++ ++PESP Q N+K ++EK V ++ ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPDYVEKYNQEQLAEKAEAQQTAPESPLQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: K7S6F2_9ERIC (Ubiquitin conjugating enzyme J2 OS=Camellia oleifera PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91 Identity = 140/191 (73.30%), Postives = 155/191 (81.15%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYP+KPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TT AEKQRLAK+SL+FNCKNPTFRK+FPEYV+KY +QQ Q + E S Q E +P +K S+ ED+ KV RRKQ FPTWM+ LLVS+FG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPFKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTVAEKQRLAKSSLAFNCKNPTFRKMFPEYVEKYEQQQLSEQPVPEQVSTTPTQQEGHRPLLDKTGNSTQEDLNKVEALRDPRNRRKQSFPTWMLLLLVSIFGVVMALPLLQL 239
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: D7KFD7_ARALL (Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyrata subsp. lyrata GN=UBC34 PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.706e-91 Identity = 137/189 (72.49%), Postives = 158/189 (83.60%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ Q ++ ++ ESPQ ++K ++EK + + ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQAATQVTTSESPQKSDTKVESEKTIDPTKEDSEGGLKERKKNKKQGLPAWIILLLVSVFGVVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 9.892e-8 Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVN----TTAAEKQRLAK 268 + GG ++ I F P+YP+KPP +T T + +Q ICL D ++W+P ++S +L + S + D +P GS+ T AE R+A+ Sbjct: 99 YEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 193
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 4.621e-7 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217 FAGG + I FPP+YP+KPP + T PN + ICL D E W+P +VS +L + S + D +P Sbjct: 45 FAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPN--INSNGSICL---DILKEQWSPALTVSKVLLSICSLLTDPNP 115
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 5.065e-7 Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVNT----TAAEKQRLAK 268 + GG ++ I F PEYP+KPP +T T + +Q ICL D ++W+P ++S +L + S + D +P GS+ T E R+A+ Sbjct: 130 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC5B_ORYSJ (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 8.871e-7 Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217 +AGG + I FPP+YP+KPP + + T PN + ICL D E W+P ++S +L + S + D +P Sbjct: 45 YAGGVFLVTIHFPPDYPFKPPKVALKTKVFHPN--INSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 115 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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