g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003584
Unique Nameg.arboreum_cottongen_reftransV1_0003584
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length878
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0003584:2..878 .
Chr9:64413441..64415191 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D3DWU9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.931e-92
Identity = 139/190 (73.16%), Postives = 159/190 (83.68%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPES-PQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q   Q  ++ ++ ES PQ  N+K ++EK V ++ ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMATPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEQAEAQQTAAESPPQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078G8M5_BRANA (BnaA09g45050D protein OS=Brassica napus GN=BnaA09g45050D PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.069e-91
Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q   ++ ++ ESP Q  N++ ++EK V    ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEAQQTAAESPLQESNTRAESEKAVELRNEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 235          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078D3C8_BRANA (BnaC08g37880D protein OS=Brassica napus GN=BnaC08g37880D PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91
Identity = 138/190 (72.63%), Postives = 160/190 (84.21%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFP+YV+KYN++Q   +  ++ ++PESP Q  N+K ++EK V ++ ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPDYVEKYNQEQLAEKAEAQQTAPESPLQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: K7S6F2_9ERIC (Ubiquitin conjugating enzyme J2 OS=Camellia oleifera PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91
Identity = 140/191 (73.30%), Postives = 155/191 (81.15%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYP+KPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TT AEKQRLAK+SL+FNCKNPTFRK+FPEYV+KY +QQ   Q + E  S    Q E  +P  +K   S+ ED+ KV        RRKQ FPTWM+ LLVS+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPFKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTVAEKQRLAKSSLAFNCKNPTFRKMFPEYVEKYEQQQLSEQPVPEQVSTTPTQQEGHRPLLDKTGNSTQEDLNKVEALRDPRNRRKQSFPTWMLLLLVSIFGVVMALPLLQL 239          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: D7KFD7_ARALL (Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyrata subsp. lyrata GN=UBC34 PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.706e-91
Identity = 137/189 (72.49%), Postives = 158/189 (83.60%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ   Q  ++ ++ ESPQ  ++K ++EK +  + ED    +K+    +KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQAATQVTTSESPQKSDTKVESEKTIDPTKEDSEGGLKERKKNKKQGLPAWIILLLVSVFGVVMALPLLQL 237          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.645e-92
Identity = 137/189 (72.49%), Postives = 156/189 (82.54%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLV----GSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ   Q  ++ ++PESPQ  ++K ++EK +    G S   +K+     KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 4.000e-89
Identity = 132/195 (67.69%), Postives = 159/195 (81.54%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPES--------PQGENSKPKTEKLVGSSGEDVKKVIPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRF+TQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNT+ AEKQRLAK+SL+FNCK+ TFRKLFPEYV+KY++QQ    E ++ ++        PQ +N+K ++EK VG   E +++V  +     +K+  P W++ LLVS+ G+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.000e-42
Identity = 68/124 (54.84%), Postives = 94/124 (75.81%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL+FN K+  F +LFPE V++  ++Q+   E SS
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS 179          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.802e-42
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS-PESPQGENSKPKTEKLVGSSG 436
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E SS P++    +  P  E   G  G
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQHG 201          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.852e-42
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E S+
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSN 179          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.314e-38
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPT-FRKLFPEYVDK 334
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSV++IL GLLSFM  +  TTGS+ TT  EK+ LAK S+ +N  N T F+ +FPE V+K
Sbjct:   49 YDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMTGDESTTGSITTTQQEKKILAKKSMYYNTFNSTRFKLVFPEIVEK 160          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.270e-37
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYV 328
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSVS+IL GLLSFM  +  TTGS+ T+  +K+ LA+ S+S+N  +N  F+ +FPE V
Sbjct:   49 YKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLARNSISYNTFQNVRFKLIFPEVV 158          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_DICDI (Ubiquitin-conjugating enzyme E2 J2 OS=Dictyostelium discoideum GN=ube2j2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.724e-37
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQ 346
            + GGYY+G+I FP EYPYKPP I M TP+GRF+   +IC SMSDFHP++W+P WS  +I+ GL+SFM ++    GS+  +   +++LA  S++FN KNP F KLFPE +  Y K+
Sbjct:   51 YHGGYYHGQIIFPVEYPYKPPSILMTTPSGRFVCNSRICTSMSDFHPDTWSPFWSNCTIILGLISFMTEDENGFGSIVKSKETRKQLASQSMAFNLKNPVFVKLFPELISDYKKK 165          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.495e-36
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSF-NCKNPTFRKLFPEYV 328
            F  G Y+G ++FP EYP+KPP I+MITPNGRF    ++CLSMSD+HP++WNP WSV++ILTGLLSFM  +  TTGS+ T+   K+RLA++S  + N +N  F K FP+ V
Sbjct:   49 FEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMTGDESTTGSITTSDNVKKRLARSSKEWNNAENQRFTKQFPDLV 158          
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.481e-35
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 2
Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKP 406
            + GG Y+G + FPP+YP+KPP I MITP+GRF T  ++CLS SDFHP+SWNP W VS+IL GL+SFM  +  TTG + T+ + ++  AK +  FN   NP F  +FPE +DK  +     +  ++   PQ  +S P
Sbjct:   49 YEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPELIDKNREDIAKAAAEAALIEPQQIHSTP 184          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3DWU9_BRAOL6.931e-9273.16Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078G8M5_BRANA1.069e-9173.26BnaA09g45050D protein OS=Brassica napus GN=BnaA09g... [more]
A0A078D3C8_BRANA1.180e-9172.63BnaC08g37880D protein OS=Brassica napus GN=BnaC08g... [more]
K7S6F2_9ERIC1.180e-9173.30Ubiquitin conjugating enzyme J2 OS=Camellia oleife... [more]
D7KFD7_ARALL1.706e-9172.49Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyr... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
UBC34_ARATH2.645e-9272.49Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis ... [more]
UBC33_ARATH4.000e-8967.69Probable ubiquitin-conjugating enzyme E2 33 OS=Ara... [more]
UB2J2_HUMAN1.000e-4254.84Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UB2J2_BOVIN1.802e-4250.00Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]
UB2J2_MOUSE7.852e-4254.03Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UBC6_CANGA4.314e-3857.14Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_YEAST2.270e-3755.45Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UB2J2_DICDI9.724e-3751.30Ubiquitin-conjugating enzyme E2 J2 OS=Dictyosteliu... [more]
UBC6_DEBHA1.495e-3655.45Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_SCHPO4.481e-3546.32Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 10..112
e-value: 2.6E-13
score: 49.4
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..81
NoneNo IPR availablePANTHERPTHR24067:SF42UBIQUITIN-CONJUGATING ENZYME E2 J2coord: 1..100
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 1..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..156
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 157..158
NoneNo IPR availableTMHMMTMhelixcoord: 134..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bp
TTTTGCAGGTGGGTATTATTATGGAAAGATCAAGTTCCCTCCAGAGTATC
CCTACAAACCTCCTGGAATCACGATGATCACCCCCAATGGACGGTTTATG
ACACAGAAGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTG
GAATCCAATGTGGTCTGTATCAAGCATACTCACAGGGCTTCTATCTTTCA
TGATGGATAACAGTCCTACCACTGGCAGTGTAAACACTACAGCTGCTGAG
AAGCAACGCCTGGCAAAAACATCCCTTTCTTTTAATTGTAAAAACCCCAC
ATTCAGAAAATTGTTTCCAGAGTATGTCGATAAGTACAACAAGCAGCAGC
AGCTCATTTCAGAGCATTCCTCACCTGAATCACCTCAAGGAGAAAATTCA
AAACCCAAGACGGAAAAACTTGTAGGCTCTTCAGGGGAAGATGTTAAAAA
AGTCATTCCAAGAAGAAAACAGCCGTTCCCAACATGGATGATGTTTTTGC
TAGTTTCCGTCTTTGGAATTGTGATGGCATTGCCGTTGCTTCAACTTTAG
TATGAACTGGGGTACAGCATGGCAAAATTCGGTTATGGTTAGTGATATAT
ACAGTGTCTAGTTGAGGGAATCCTTTTTCAATGCTCCTTAGGGTTGTGAT
GTTCTGAAAAAAATGTATAGGGGAGTTTGATACAAGATTCCTAGGAGAGT
GAGTTGGATCTTGACTGATTATTTCATCTATGTGAAAGTTGGTGTTGGTA
ATTTAACGAGTGAGATTGAAAAAATACATGGCTTGAAATGTTGGTCGATT
TTTAGTTCGACTGTCATAAGTTTTTATACATTTATCCTCTTTATGCTCTG
AAATTAGCACAGTATATTTACCGATTCA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD