g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D3DWU9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 6.931e-92 Identity = 139/190 (73.16%), Postives = 159/190 (83.68%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPES-PQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q Q ++ ++ ES PQ N+K ++EK V ++ ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMATPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEQAEAQQTAAESPPQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078G8M5_BRANA (BnaA09g45050D protein OS=Brassica napus GN=BnaA09g45050D PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.069e-91 Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN++Q ++ ++ ESP Q N++ ++EK V ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQEQLAEAQQTAAESPLQESNTRAESEKAVELRNEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 235
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A078D3C8_BRANA (BnaC08g37880D protein OS=Brassica napus GN=BnaC08g37880D PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91 Identity = 138/190 (72.63%), Postives = 160/190 (84.21%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESP-QGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFP+YV+KYN++Q + ++ ++PESP Q N+K ++EK V ++ ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPDYVEKYNQEQLAEKAEAQQTAPESPLQESNTKAESEKAVEATKEDSEGGLKERRKNKKQGLPAWIILLLVSVFGVVMALPLLQL 238
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: K7S6F2_9ERIC (Ubiquitin conjugating enzyme J2 OS=Camellia oleifera PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.180e-91 Identity = 140/191 (73.30%), Postives = 155/191 (81.15%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYP+KPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSV TT AEKQRLAK+SL+FNCKNPTFRK+FPEYV+KY +QQ Q + E S Q E +P +K S+ ED+ KV RRKQ FPTWM+ LLVS+FG+VMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPFKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTVAEKQRLAKSSLAFNCKNPTFRKMFPEYVEKYEQQQLSEQPVPEQVSTTPTQQEGHRPLLDKTGNSTQEDLNKVEALRDPRNRRKQSFPTWMLLLLVSIFGVVMALPLLQL 239
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: D7KFD7_ARALL (Ubiquitin-conjugating enzyme 32 OS=Arabidopsis lyrata subsp. lyrata GN=UBC34 PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.706e-91 Identity = 137/189 (72.49%), Postives = 158/189 (83.60%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGED----VKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT AEKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ Q ++ ++ ESPQ ++K ++EK + + ED +K+ +KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVAEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQAATQVTTSESPQKSDTKVESEKTIDPTKEDSEGGLKERKKNKKQGLPAWIILLLVSVFGVVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 2.645e-92 Identity = 137/189 (72.49%), Postives = 156/189 (82.54%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLV----GSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT EKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ Q ++ ++PESPQ ++K ++EK + G S +K+ KQ P W++ LLVSVFG+VMALPLLQL Sbjct: 49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 4.000e-89 Identity = 132/195 (67.69%), Postives = 159/195 (81.54%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPES--------PQGENSKPKTEKLVGSSGEDVKKVIPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGG+YYGKIKFPPEYPYKPPGITM TPNGRF+TQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNT+ AEKQRLAK+SL+FNCK+ TFRKLFPEYV+KY++QQ E ++ ++ PQ +N+K ++EK VG E +++V + +K+ P W++ LLVS+ G+VMALPLLQL Sbjct: 49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3) HSP 1 Score: 153.295 bits (386), Expect = 1.000e-42 Identity = 68/124 (54.84%), Postives = 94/124 (75.81%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373 + GGYY+GK+ FP E+P+KPP I MITPNGRF ++CLS++DFHP++WNP WSVS+ILTGLLSFM++ PT GS+ T+ K++LA SL+FN K+ F +LFPE V++ ++Q+ E SS Sbjct: 56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS 179
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.802e-42 Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS-PESPQGENSKPKTEKLVGSSG 436 + GGYY+GK+ FP E+P+KPP I MITPNGRF ++CLS++DFHP++WNP WSVS+ILTGLLSFM++ PT GS+ T+ K++LA SL FN K+ F +LFPE V++ ++Q+ E SS P++ + P E G G Sbjct: 56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQHG 201
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.852e-42 Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373 + GGYY+GK+ FP E+P+KPP I MITPNGRF ++CLS++DFHP++WNP WSVS+ILTGLLSFM++ PT GS+ T+ K++LA SL FN K+ F +LFPE V++ ++Q+ E S+ Sbjct: 56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSN 179
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.314e-38 Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPT-FRKLFPEYVDK 334 + GG Y+G + FP +YPYKPP I MITPNGRF ++CLSMSD+HP++WNP WSV++IL GLLSFM + TTGS+ TT EK+ LAK S+ +N N T F+ +FPE V+K Sbjct: 49 YDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMTGDESTTGSITTTQQEKKILAKKSMYYNTFNSTRFKLVFPEIVEK 160
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.270e-37 Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYV 328 + GG Y+G + FP +YPYKPP I MITPNGRF ++CLSMSD+HP++WNP WSVS+IL GLLSFM + TTGS+ T+ +K+ LA+ S+S+N +N F+ +FPE V Sbjct: 49 YKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLARNSISYNTFQNVRFKLIFPEVV 158
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_DICDI (Ubiquitin-conjugating enzyme E2 J2 OS=Dictyostelium discoideum GN=ube2j2 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.724e-37 Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQ 346 + GGYY+G+I FP EYPYKPP I M TP+GRF+ +IC SMSDFHP++W+P WS +I+ GL+SFM ++ GS+ + +++LA S++FN KNP F KLFPE + Y K+ Sbjct: 51 YHGGYYHGQIIFPVEYPYKPPSILMTTPSGRFVCNSRICTSMSDFHPDTWSPFWSNCTIILGLISFMTEDENGFGSIVKSKETRKQLASQSMAFNLKNPVFVKLFPELISDYKKK 165
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.495e-36 Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSF-NCKNPTFRKLFPEYV 328 F G Y+G ++FP EYP+KPP I+MITPNGRF ++CLSMSD+HP++WNP WSV++ILTGLLSFM + TTGS+ T+ K+RLA++S + N +N F K FP+ V Sbjct: 49 FEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMTGDESTTGSITTSDNVKKRLARSSKEWNNAENQRFTKQFPDLV 158
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.481e-35 Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKP 406 + GG Y+G + FPP+YP+KPP I MITP+GRF T ++CLS SDFHP+SWNP W VS+IL GL+SFM + TTG + T+ + ++ AK + FN NP F +FPE +DK + + ++ PQ +S P Sbjct: 49 YEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPELIDKNREDIAKAAAEAALIEPQQIHSTP 184 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|