g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003584
Unique Name	g.arboreum_cottongen_reftransV1_0003584
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	878

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0003584:2..878 . Chr9:64413441..64415191 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: B9T6E8_RICCO (Ubiquitin-conjugating enzyme E2 j2, putative OS=Ricinus communis GN=RCOM_0333490 PE=4 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.961e-97
Identity = 149/190 (78.42%), Postives = 163/190 (85.79%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVI---PRR--KQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPP+YPY PPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK SL+FNCKNPTF+KLFPEYV+KYN+QQ   Q++S+  S E+ + + S+P  EKL  SSG DVK+      RR  KQ FPTW+M LLVS FGIVMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPDYPYNPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFKKLFPEYVEKYNQQQQSEQIMSDQVSREASREDRSRPTLEKLDNSSG-DVKRDTLKDARRNGKQTFPTWLMLLLVSAFGIVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: C6TMV6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.732e-95
Identity = 145/193 (75.13%), Postives = 166/193 (86.01%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPE------SPQGENSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK+SLSFNCKN TFRK+FPEYV+KYN+QQ  +SE ++PE      SP  ++S+P  EK + S+GED+K+V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKIFPEYVEKYNQQQ--LSEQAAPERVSLDTSPD-KSSRPVLEKKLESNGEDMKRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: I1KHJ7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 2.560e-95
Identity = 142/192 (73.96%), Postives = 164/192 (85.42%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGE-----NSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK+SLSFNCKN TFRK+FPEYV+KYN+QQ  +SE ++PE    +     +S+P  EK + S+GED+++V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQ--LSEQAAPERVSSDTSPDKSSRPVLEKKLESNGEDMRRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B2P1A0_GLYSO (Ubiquitin-conjugating enzyme E2 34 OS=Glycine soja GN=glysoja_009683 PE=4 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 2.560e-95
Identity = 142/192 (73.96%), Postives = 164/192 (85.42%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGE-----NSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK+SLSFNCKN TFRK+FPEYV+KYN+QQ  +SE ++PE    +     +S+P  EK + S+GED+++V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQ--LSEQAAPERVSSDTSPDKSSRPVLEKKLESNGEDMRRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: M5X6D2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010775mg PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 6.371e-95
Identity = 145/190 (76.32%), Postives = 161/190 (84.74%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSG-----EDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK SL+FN KNPTFRK+FPEYV+KYN+QQ   QLI+E  S E  Q ENS+P  EK+  S+G     + +K+    +KQ FPTWMM LL+SVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKASLAFNSKNPTFRKIFPEYVEKYNQQQLSEQLITERVSSELSQ-ENSRPLLEKVDDSTGGMKRLDALKEARKNKKQSFPTWMMLLLISVFGVVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B2Q7B1_GLYSO (Ubiquitin-conjugating enzyme E2 34 OS=Glycine soja GN=glysoja_013060 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.222e-94
Identity = 144/193 (74.61%), Postives = 165/193 (85.49%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPE------SPQGENSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVN T AEKQRLAK+SLSFNCKN TFRK+FPEYV+KYN+QQ  +SE ++PE      SP  ++S+P  EK + S+GED+K+V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNPTTAEKQRLAKSSLSFNCKNATFRKIFPEYVEKYNQQQ--LSEQAAPERVSLDTSPD-KSSRPVLEKKLESNGEDMKRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A059AIX1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02593 PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.820e-94
Identity = 143/191 (74.87%), Postives = 162/191 (84.82%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            F GGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTA EKQRLAK+SL+FNCKN TFRK+FPEYV+KYN+QQ   Q +SE  +PE P+ +N+   T++   ++G  VK +  P+     RKQ FPTWMM LL+S+FG+VMALPLLQL
Sbjct:   49 FVGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAEEKQRLAKSSLAFNCKNQTFRKIFPEYVEKYNEQQLAEQHVSEQVTPEHPKDDNT--GTDRDGNATGAQVKNLNTPKEMRRNRKQSFPTWMMLLLISIFGLVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: V7AP51_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G122800g PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 5.413e-94
Identity = 142/190 (74.74%), Postives = 159/190 (83.68%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK+SLSFN KN TFRK+FPEYV+KYN+QQ   Q   E  S E+   ++SK   E  + SSGEDV++V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNSKNATFRKMFPEYVEKYNQQQLSEQAAQERVSTEASPDKSSKSVLENKLESSGEDVRRVDGLKDMRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: T2DNA0_PHAVU (Ubiquitin conjugating enzyme 2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 9.413e-94
Identity = 141/189 (74.60%), Postives = 160/189 (84.66%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ--QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-----IPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI+M TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT AEKQRLAK+SLSFN KN TFRK+FPEYV+KYN+QQ  +  +E  S E+   ++SK   E  + SSGEDV++V     + + ++PFPTWMM LL S+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNSKNATFRKMFPEYVEKYNQQQLSEQAAERVSSEASPDKSSKSVLENKLESSGEDVRRVDGLKDMRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: U5GQ26_POPTR (Ubiquitin-conjugating enzyme family protein OS=Populus trichocarpa GN=POPTR_0001s16230g PE=4 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.038e-93
Identity = 144/189 (76.19%), Postives = 160/189 (84.66%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHS-SPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFM DNSPTTGSVNTTAA+K+RLAK SL+FNCKN  FRKLFPEYV+K++  Q+L SE   S ++PQ + S+ K EK   SS E+ K+V  P+     RKQPFPTWMM LLVS+FG+VMALPLLQL
Sbjct:   49 FAGGYYYGKIKFPPEYPYKPPGIIMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMTDNSPTTGSVNTTAADKRRLAKDSLAFNCKNAAFRKLFPEYVEKHD--QELHSEQRVSSQAPQEDKSRAKLEKHGDSSVENAKRVDAPKDERRNRKQPFPTWMMLLLVSIFGVVMALPLLQL 235

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.645e-92
Identity = 137/189 (72.49%), Postives = 156/189 (82.54%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLV----GSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT  EKQRLAK+SL+FNCK P FRKLFPEYV+KYN+QQ   Q  ++ ++PESPQ  ++K ++EK +    G S   +K+     KQ  P W++ LLVSVFG+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 4.000e-89
Identity = 132/195 (67.69%), Postives = 159/195 (81.54%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPES--------PQGENSKPKTEKLVGSSGEDVKKVIPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547
            FAGG+YYGKIKFPPEYPYKPPGITM TPNGRF+TQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNT+ AEKQRLAK+SL+FNCK+ TFRKLFPEYV+KY++QQ    E ++ ++        PQ +N+K ++EK VG   E +++V  +     +K+  P W++ LLVS+ G+VMALPLLQL
Sbjct:   49 FAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.000e-42
Identity = 68/124 (54.84%), Postives = 94/124 (75.81%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL+FN K+  F +LFPE V++  ++Q+   E SS
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.802e-42
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS-PESPQGENSKPKTEKLVGSSG 436
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E SS P++    +  P  E   G  G
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQHG 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.852e-42
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSS 373
            + GGYY+GK+ FP E+P+KPP I MITPNGRF    ++CLS++DFHP++WNP WSVS+ILTGLLSFM++  PT GS+ T+   K++LA  SL FN K+  F +LFPE V++  ++Q+   E S+
Sbjct:   56 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSN 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=UBC6 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.314e-38
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPT-FRKLFPEYVDK 334
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSV++IL GLLSFM  +  TTGS+ TT  EK+ LAK S+ +N  N T F+ +FPE V+K
Sbjct:   49 YDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMTGDESTTGSITTTQQEKKILAKKSMYYNTFNSTRFKLVFPEIVEK 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.270e-37
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYV 328
            + GG Y+G + FP +YPYKPP I MITPNGRF    ++CLSMSD+HP++WNP WSVS+IL GLLSFM  +  TTGS+ T+  +K+ LA+ S+S+N  +N  F+ +FPE V
Sbjct:   49 YKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLARNSISYNTFQNVRFKLIFPEVV 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2J2_DICDI (Ubiquitin-conjugating enzyme E2 J2 OS=Dictyostelium discoideum GN=ube2j2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.724e-37
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQ 346
            + GGYY+G+I FP EYPYKPP I M TP+GRF+   +IC SMSDFHP++W+P WS  +I+ GL+SFM ++    GS+  +   +++LA  S++FN KNP F KLFPE +  Y K+
Sbjct:   51 YHGGYYHGQIIFPVEYPYKPPSILMTTPSGRFVCNSRICTSMSDFHPDTWSPFWSNCTIILGLISFMTEDENGFGSIVKSKETRKQLASQSMAFNLKNPVFVKLFPELISDYKKK 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=UBC6 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.495e-36
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSF-NCKNPTFRKLFPEYV 328
            F  G Y+G ++FP EYP+KPP I+MITPNGRF    ++CLSMSD+HP++WNP WSV++ILTGLLSFM  +  TTGS+ T+   K+RLA++S  + N +N  F K FP+ V
Sbjct:   49 FEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMTGDESTTGSITTSDNVKKRLARSSKEWNNAENQRFTKQFPDLV 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.481e-35
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 2

Query:    2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNC-KNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKP 406
            + GG Y+G + FPP+YP+KPP I MITP+GRF T  ++CLS SDFHP+SWNP W VS+IL GL+SFM  +  TTG + T+ + ++  AK +  FN   NP F  +FPE +DK  +     +  ++   PQ  +S P
Sbjct:   49 YEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPELIDKNREDIAKAAAEAALIEPQQIHSTP 184

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9T6E8_RICCO	4.961e-97	78.42	Ubiquitin-conjugating enzyme E2 j2, putative OS=Ri...	[more]
C6TMV6_SOYBN	1.732e-95	75.13	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I1KHJ7_SOYBN	2.560e-95	73.96	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2P1A0_GLYSO	2.560e-95	73.96	Ubiquitin-conjugating enzyme E2 34 OS=Glycine soja...	[more]
M5X6D2_PRUPE	6.371e-95	76.32	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0B2Q7B1_GLYSO	2.222e-94	74.61	Ubiquitin-conjugating enzyme E2 34 OS=Glycine soja...	[more]
A0A059AIX1_EUCGR	2.820e-94	74.87	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
V7AP51_PHAVU	5.413e-94	74.74	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
T2DNA0_PHAVU	9.413e-94	74.60	Ubiquitin conjugating enzyme 2 OS=Phaseolus vulgar...	[more]
U5GQ26_POPTR	3.038e-93	76.19	Ubiquitin-conjugating enzyme family protein OS=Pop...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
UBC34_ARATH	2.645e-92	72.49	Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis ...	[more]
UBC33_ARATH	4.000e-89	67.69	Probable ubiquitin-conjugating enzyme E2 33 OS=Ara...	[more]
UB2J2_HUMAN	1.000e-42	54.84	Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens...	[more]
UB2J2_BOVIN	1.802e-42	50.00	Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G...	[more]
UB2J2_MOUSE	7.852e-42	54.03	Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus...	[more]
UBC6_CANGA	4.314e-38	57.14	Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr...	[more]
UBC6_YEAST	2.270e-37	55.45	Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces...	[more]
UB2J2_DICDI	9.724e-37	51.30	Ubiquitin-conjugating enzyme E2 J2 OS=Dictyosteliu...	[more]
UBC6_DEBHA	1.495e-36	55.45	Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ...	[more]
UBC6_SCHPO	4.481e-35	46.32	Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 10..112 e-value: 2.6E-13 score: 49.4
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 1..81
None	No IPR available	PANTHER	PTHR24067:SF42	UBIQUITIN-CONJUGATING ENZYME E2 J2	coord: 1..100
None	No IPR available	PANTHER	PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	coord: 1..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..134
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 135..156
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 157..158
None	No IPR available	TMHMM	TMhelix		coord: 134..156

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bp
TTTTGCAGGTGGGTATTATTATGGAAAGATCAAGTTCCCTCCAGAGTATC
CCTACAAACCTCCTGGAATCACGATGATCACCCCCAATGGACGGTTTATG
ACACAGAAGAAAATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTG
GAATCCAATGTGGTCTGTATCAAGCATACTCACAGGGCTTCTATCTTTCA
TGATGGATAACAGTCCTACCACTGGCAGTGTAAACACTACAGCTGCTGAG
AAGCAACGCCTGGCAAAAACATCCCTTTCTTTTAATTGTAAAAACCCCAC
ATTCAGAAAATTGTTTCCAGAGTATGTCGATAAGTACAACAAGCAGCAGC
AGCTCATTTCAGAGCATTCCTCACCTGAATCACCTCAAGGAGAAAATTCA
AAACCCAAGACGGAAAAACTTGTAGGCTCTTCAGGGGAAGATGTTAAAAA
AGTCATTCCAAGAAGAAAACAGCCGTTCCCAACATGGATGATGTTTTTGC
TAGTTTCCGTCTTTGGAATTGTGATGGCATTGCCGTTGCTTCAACTTTAG
TATGAACTGGGGTACAGCATGGCAAAATTCGGTTATGGTTAGTGATATAT
ACAGTGTCTAGTTGAGGGAATCCTTTTTCAATGCTCCTTAGGGTTGTGAT
GTTCTGAAAAAAATGTATAGGGGAGTTTGATACAAGATTCCTAGGAGAGT
GAGTTGGATCTTGACTGATTATTTCATCTATGTGAAAGTTGGTGTTGGTA
ATTTAACGAGTGAGATTGAAAAAATACATGGCTTGAAATGTTGGTCGATT
TTTAGTTCGACTGTCATAAGTTTTTATACATTTATCCTCTTTATGCTCTG
AAATTAGCACAGTATATTTACCGATTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD

Search form

g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum

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