g.arboreum_cottongen_reftransV1_0003584, g.arboreum_cottongen_reftransV1_0003584 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B0NWM3_GOSAR (Ubiquitin-conjugating enzyme E2 34-like protein OS=Gossypium arboreum GN=F383_04625 PE=4 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 2.838e-128 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGIVMALPLLQL 230
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D2UPH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G054900 PE=4 SV=1) HSP 1 Score: 352.058 bits (902), Expect = 2.782e-116 Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRRKQPFPTWMMFLLVSVFGI 520 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVD+Y KQQQLISEHSSPESPQGENSKPKTEKLV SSGEDVKKVIPRRKQPFPTWMM LLVSVFGI Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDRYKKQQQLISEHSSPESPQGENSKPKTEKLVDSSGEDVKKVIPRRKQPFPTWMMLLLVSVFGI 221
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0D2SUM5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G173000 PE=4 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 2.466e-113 Identity = 165/188 (87.77%), Postives = 172/188 (91.49%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRR------KQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT EK RLAKTSL+FNCKNPTFRKLFPEYVDK+NKQQQL+SEH SPESP+GENSKP+TEK+V SSGEDVKKV R KQ FPTWMM LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTVTEKLRLAKTSLAFNCKNPTFRKLFPEYVDKHNKQQQLVSEHLSPESPEGENSKPETEKVVNSSGEDVKKVDTLRNTRRIQKQSFPTWMMLLLVSIFGIVMALPLLQL 236
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A0B0NSN3_GOSAR (Ubiquitin-conjugating enzyme E2 34-like protein OS=Gossypium arboreum GN=F383_20734 PE=4 SV=1) HSP 1 Score: 337.806 bits (865), Expect = 7.653e-113 Identity = 164/188 (87.23%), Postives = 172/188 (91.49%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIPRR------KQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTT +EK RLAK SL+FNCKNPTFRKLFPEYVDK+NKQQQL+SEH SPESPQGENSKP+TEK+V SSG+DVKKV R KQ FPTWMM LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTVSEKLRLAKASLAFNCKNPTFRKLFPEYVDKHNKQQQLVSEHLSPESPQGENSKPETEKVVNSSGKDVKKVDTLRNTRRNQKQSFPTWMMLLLVSIFGIVMALPLLQL 236
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A061GJX4_THECC (Ubiquitin-conjugating enzyme 34 isoform 2 OS=Theobroma cacao GN=TCM_029255 PE=4 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 3.060e-108 Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNK-QQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK SL+FNCKNPTFRKLFPEYVDKYNK QQQL+SEH SPES + EN KP+ EK V SS ED K+V P RKQ FPTWMM LLVS+FGIVMALPLLQL Sbjct: 51 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKYNKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL 239
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A061GDB5_THECC (Ubiquitin-conjugating enzyme 34 isoform 1 OS=Theobroma cacao GN=TCM_029255 PE=4 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 3.188e-108 Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNK-QQQLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVIP------RRKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAK SL+FNCKNPTFRKLFPEYVDKYNK QQQL+SEH SPES + EN KP+ EK V SS ED K+V P RKQ FPTWMM LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKYNKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWMMLLLVSIFGIVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067L948_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24623 PE=4 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 1.033e-101 Identity = 153/191 (80.10%), Postives = 167/191 (87.43%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKVI----PR--RKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGITMITP+GRF+TQKKICLSMSDFHPESWNPMWS SSILTGLLSFMMDNSPTTGSVN+T AEKQRLAK SL+FNCKNPTFRKLFPEYV+KYN+QQ Q+I+E +S E+ Q E S+PK EKL SGEDVK+V PR RKQ FPTW+M LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGITMITPSGRFLTQKKICLSMSDFHPESWNPMWSASSILTGLLSFMMDNSPTTGSVNSTVAEKQRLAKASLAFNCKNPTFRKLFPEYVEKYNQQQQSEQIITEQASTEASQEEKSRPKLEKLDNFSGEDVKRVDTLKGPRGNRKQTFPTWVMLLLVSIFGIVMALPLLQL 239
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067EIR1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026499mg PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 2.939e-99 Identity = 151/191 (79.06%), Postives = 163/191 (85.34%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ Q +SE SPESP ENS+PK EK+ SGED+K + P+ RKQ FPTWM+ LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: A0A067ES86_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026499mg PE=4 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 7.756e-99 Identity = 151/191 (79.06%), Postives = 163/191 (85.34%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ Q +SE SPESP ENS+PK EK+ SGED+K + P+ RKQ FPTWM+ LLVS+FGIVMALPLLQL Sbjct: 40 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESPNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 228
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Match: V4RYE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026383mg PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 3.107e-98 Identity = 150/191 (78.53%), Postives = 162/191 (84.82%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKTSLSFNCKNPTFRKLFPEYVDKYNKQQ---QLISEHSSPESPQGENSKPKTEKLVGSSGEDVKKV-IPR-----RKQPFPTWMMFLLVSVFGIVMALPLLQL 547 FAGGYYYGKIKFPPEYPYKPPGI MITPNGRFMTQKK+CLSMSDFHPESWNPMWSVSSILTGLLSFMMD SPTTGSVNTT EKQRLAK SL+FNCKNP FRKLFPEYV+KYN+QQ Q +SE SPES ENS+PK EK+ SGED+K + P+ RKQ FPTWM+ LLVS+FGIVMALPLLQL Sbjct: 49 FAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQLSPESRNEENSRPKVEKV--GSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 237
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 9.892e-8 Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVN----TTAAEKQRLAK 268 + GG ++ I F P+YP+KPP +T T + +Q ICL D ++W+P ++S +L + S + D +P GS+ T AE R+A+ Sbjct: 99 YEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 193
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 4.621e-7 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217 FAGG + I FPP+YP+KPP + T PN + ICL D E W+P +VS +L + S + D +P Sbjct: 45 FAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPN--INSNGSICL---DILKEQWSPALTVSKVLLSICSLLTDPNP 115
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 5.065e-7 Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMITP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPT---TGSVNT----TAAEKQRLAK 268 + GG ++ I F PEYP+KPP +T T + +Q ICL D ++W+P ++S +L + S + D +P GS+ T E R+A+ Sbjct: 130 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Match: UBC5B_ORYSJ (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 8.871e-7 Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 2 Query: 2 FAGGYYYGKIKFPPEYPYKPPGITMIT----PNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 217 +AGG + I FPP+YP+KPP + + T PN + ICL D E W+P ++S +L + S + D +P Sbjct: 45 YAGGVFLVTIHFPPDYPFKPPKVALKTKVFHPN--INSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 115 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0003584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003584 ID=g.arboreum_cottongen_reftransV1_0003584; Name=g.arboreum_cottongen_reftransV1_0003584; organism=Gossypium arboreum; type=contig; length=878bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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