g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B2SDM7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020106 PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 2.170e-56 Identity = 95/130 (73.08%), Postives = 114/130 (87.69%), Query Frame = -1 Query: 10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399 NI+GK S+HSQ ICL++LI FT AATGCILLS+GQD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL VAA Sbjct: 131 NIKGKGSNHSQRICLILLISFTFAAATGCILLSVGQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 260
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: I1NFU1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 6.971e-56 Identity = 94/130 (72.31%), Postives = 114/130 (87.69%), Query Frame = -1 Query: 10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399 NI+GK S+HSQ ICL++LI FT AATGCILLS+GQD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM IDKLN+DLN++ADTL+EKT+EN+VKI+RVFN VRLAL VAA Sbjct: 131 NIKGKGSNHSQRICLILLISFTFAAATGCILLSVGQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRILLPSDVMDGIDKLNVDLNSSADTLSEKTNENSVKIRRVFNDVRLALYVVAA 260
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: V7BAU5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036200g PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.045e-55 Identity = 94/130 (72.31%), Postives = 114/130 (87.69%), Query Frame = -1 Query: 10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399 NI+GK S+HS+ ICL++LI T AATGCILLS+GQD+FHD+AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM IDKLN+DLNTAA+TL+EKT+EN+VKI+RVFN VRLAL VAA Sbjct: 138 NIKGKGSNHSRRICLILLISLTFAAATGCILLSVGQDKFHDQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRIVLPSDVMDSIDKLNVDLNTAANTLSEKTNENSVKIRRVFNDVRLALYVVAA 267
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: I1LEM9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.438e-55 Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -1 Query: 10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399 NI+ K S+HSQ ICL++LI FT AATGCILLS+ QD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V Q+ LPSDVM IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL VAA Sbjct: 138 NIKDKGSNHSQRICLILLISFTFAAATGCILLSVAQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTQILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 267
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B2PGJ8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021285 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.474e-55 Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -1 Query: 10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399 NI+ K S+HSQ ICL++LI FT AATGCILLS+ QD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V Q+ LPSDVM IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL VAA Sbjct: 138 NIKDKGSNHSQRICLILLISFTFAAATGCILLSVAQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTQILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 267 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001589 ID=g.arboreum_cottongen_reftransV1_0001589; Name=g.arboreum_cottongen_reftransV1_0001589; organism=Gossypium arboreum; type=contig; length=399bpback to top |