g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001589
Unique Nameg.arboreum_cottongen_reftransV1_0001589
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0001589:1..399 .
Chr5:31242990..31243664 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B2SDM7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020106 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.170e-56
Identity = 95/130 (73.08%), Postives = 114/130 (87.69%), Query Frame = -1 
Query:   10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399
            NI+GK S+HSQ ICL++LI FT  AATGCILLS+GQD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM  IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL  VAA
Sbjct:  131 NIKGKGSNHSQRICLILLISFTFAAATGCILLSVGQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 260
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: I1NFU1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 6.971e-56
Identity = 94/130 (72.31%), Postives = 114/130 (87.69%), Query Frame = -1 
Query:   10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399
            NI+GK S+HSQ ICL++LI FT  AATGCILLS+GQD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM  IDKLN+DLN++ADTL+EKT+EN+VKI+RVFN VRLAL  VAA
Sbjct:  131 NIKGKGSNHSQRICLILLISFTFAAATGCILLSVGQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRILLPSDVMDGIDKLNVDLNSSADTLSEKTNENSVKIRRVFNDVRLALYVVAA 260
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: V7BAU5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G036200g PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.045e-55
Identity = 94/130 (72.31%), Postives = 114/130 (87.69%), Query Frame = -1 
Query:   10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399
            NI+GK S+HS+ ICL++LI  T  AATGCILLS+GQD+FHD+AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V ++ LPSDVM  IDKLN+DLNTAA+TL+EKT+EN+VKI+RVFN VRLAL  VAA
Sbjct:  138 NIKGKGSNHSRRICLILLISLTFAAATGCILLSVGQDKFHDQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTRIVLPSDVMDSIDKLNVDLNTAANTLSEKTNENSVKIRRVFNDVRLALYVVAA 267
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: I1LEM9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.438e-55
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -1 
Query:   10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399
            NI+ K S+HSQ ICL++LI FT  AATGCILLS+ QD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V Q+ LPSDVM  IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL  VAA
Sbjct:  138 NIKDKGSNHSQRICLILLISFTFAAATGCILLSVAQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTQILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 267
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B2PGJ8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021285 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.474e-55
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = -1 
Query:   10 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAA 399
            NI+ K S+HSQ ICL++LI FT  AATGCILLS+ QD+FH +AL TL+Y VNQSDYTVQ L+NVT+YLSLAKTI+V Q+ LPSDVM  IDKLN+DLN+AADTL+EKT+EN+VKI+RVFN VRLAL  VAA
Sbjct:  138 NIKDKGSNHSQRICLILLISFTFAAATGCILLSVAQDKFHGQALDTLHYFVNQSDYTVQTLRNVTEYLSLAKTINVTQILLPSDVMDGIDKLNVDLNSAADTLSEKTNENSVKIRRVFNDVRLALYVVAA 267
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2SDM7_GLYSO2.170e-5673.08Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
I1NFU1_SOYBN6.971e-5672.31Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
V7BAU5_PHAVU2.045e-5572.31Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
I1LEM9_SOYBN3.438e-5572.31Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PGJ8_GLYSO3.474e-5572.31Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31414FAMILY NOT NAMEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR31414:SF8SUBFAMILY NOT NAMEDcoord: 1..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.518

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001589 ID=g.arboreum_cottongen_reftransV1_0001589; Name=g.arboreum_cottongen_reftransV1_0001589; organism=Gossypium arboreum; type=contig; length=399bp
TAGCATCACAGCTGCCACGGTGATCAGTGCTAATCGTACAGCATTGAAGA
CTCTTTTTATTTTGACAGCATTTTCATCAGTCTTCTCAGTAAGTGTATCT
GCTGCAGTGTTTAGATCTATGTTCAACTTGTCAATGTCGGTCATGACATC
GGAAGGAAGGAAAACCTGAGCCACACTGATGGTTTTCGCTAGAGATAGGT
ACTGTGTAACATTCTTTAGGATCTGTACAGTATAGTCTGACTGATTTACA
ACATAATTCAAAGTATGCAACGCTTCATCATGAAATTCATCTTGCCCAAT
AGAAAGAAGAATACATCCAGTCGCAGCAACACTTGTGAACAATATGAGCA
TTACAAGACAAATAGTTTGTGAGTGATCTGATTTTTTTCCTTCGATGTT
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