g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001589
Unique Name	g.arboreum_cottongen_reftransV1_0001589
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr5	chromosome	g.arboreum_cottongen_reftransV1_0001589:1..399 . Chr5:31242990..31243664 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: W9R2J4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025877 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.948e-63
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+G+ S  SQ ICL +L++FT  AA GCILLSIGQDEFH E LHTLNY+VNQSDYTV IL+NVTQYLSLAK I+VAQVFLPSD+M DIDKLN+DLN AADTLT+KT EN++KIKRVFN VR ALITVAAVML
Sbjct:  133 NIKGEGSHLSQKICLTLLLVFTCAAAIGCILLSIGQDEFHGEVLHTLNYIVNQSDYTVHILRNVTQYLSLAKDINVAQVFLPSDIMDDIDKLNVDLNNAADTLTDKTSENSIKIKRVFNLVRSALITVAAVML 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: M5XA99_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003522mg PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 8.096e-63
Identity = 101/133 (75.94%), Postives = 119/133 (89.47%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+ ++S  SQ ICL++L++FT  AA GC+LLS+GQDEFHDEA+ TLNYVVNQSDYTVQ L+NVT+YLSLAK ISVAQ+FLPSDVM  IDKLN+DLNTAA+TLTEKT EN+VK+KRVF+AVR ALITVAAVML
Sbjct:  142 NIKEEESHRSQRICLILLLVFTCAAAIGCVLLSVGQDEFHDEAMRTLNYVVNQSDYTVQTLRNVTEYLSLAKAISVAQIFLPSDVMDGIDKLNLDLNTAANTLTEKTSENSVKVKRVFSAVRSALITVAAVML 274

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A067KFS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09265 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.841e-62
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = -1

Query:    1 IEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 396
            I+GK S+ SQ ICL++LI+FT  A  GCILLS+GQDEFHDEALHTL YVVNQSDYTVQ L+NVT+YLSLAKT +VAQVFLPS+V+ DIDKLN+DLN+AAD L EKT ENA KIK VFNAVR ALI+VAAVML
Sbjct:   85 IKGKGSERSQKICLILLIVFTCAAGVGCILLSVGQDEFHDEALHTLKYVVNQSDYTVQTLRNVTKYLSLAKTTNVAQVFLPSNVLDDIDKLNVDLNSAADILKEKTSENAGKIKNVFNAVRSALISVAAVML 216

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A067FMU2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008737mg PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 7.304e-61
Identity = 99/133 (74.44%), Postives = 117/133 (87.97%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+GK+S  SQ ICL++LI+FT  AA GCILLS+GQDEFH EA+HTL YVVNQSDYTV+ L+NVT+YLSLAKTI+VAQVFLPS VM DIDKLN DL+TAA+TL +KT EN+ KI++VFNAVR ALITVAA+ML
Sbjct:   46 NIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALML 178

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A067FNJ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008737mg PE=4 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.034e-60
Identity = 99/133 (74.44%), Postives = 117/133 (87.97%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+GK+S  SQ ICL++LI+FT  AA GCILLS+GQDEFH EA+HTL YVVNQSDYTV+ L+NVT+YLSLAKTI+VAQVFLPS VM DIDKLN DL+TAA+TL +KT EN+ KI++VFNAVR ALITVAA+ML
Sbjct:  136 NIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALML 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A067FF54_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008737mg PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.890e-60
Identity = 99/133 (74.44%), Postives = 117/133 (87.97%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+GK+S  SQ ICL++LI+FT  AA GCILLS+GQDEFH EA+HTL YVVNQSDYTV+ L+NVT+YLSLAKTI+VAQVFLPS VM DIDKLN DL+TAA+TL +KT EN+ KI++VFNAVR ALITVAA+ML
Sbjct:  136 NIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALML 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: V4W610_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014762mg PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.415e-60
Identity = 99/133 (74.44%), Postives = 116/133 (87.22%), Query Frame = -1

Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI+GK+S  SQ ICL++LI+FT  AA GCILLS+GQDEFH   +HTL YVVNQSDYTV+ L+NVT+YLSLAKTI+VAQVFLPSDVM DIDKLN DL+TAA+TL EKT EN+ KI++VFNAVR ALITVAA+ML
Sbjct:  134 NIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGGVMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSDVMDDIDKLNRDLSTAANTLAEKTSENSAKIRKVFNAVRSALITVAALML 266

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: B9HW92_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12580g PE=4 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.215e-57
Identity = 99/132 (75.00%), Postives = 112/132 (84.85%), Query Frame = -1

Query:    4 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399
            NI+ K S  SQ I L+MLILFT  AA GCILL +GQD+FH EA++TL YVVNQSDYTVQ LKNVT+YLSLAKTI++AQ+ LPS+VM DIDKLN+DLN AADTLTEKT ENA KI +VFNAVR ALITVAAVM
Sbjct:  137 NIKDKGSSRSQRISLIMLILFTCAAAIGCILLCVGQDDFHGEAMNTLKYVVNQSDYTVQTLKNVTEYLSLAKTINIAQLVLPSNVMDDIDKLNVDLNAAADTLTEKTSENAGKIVKVFNAVRSALITVAAVM 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A059D7J2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02889 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.689e-56
Identity = 97/131 (74.05%), Postives = 110/131 (83.97%), Query Frame = -1

Query:    4 IEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 396
            I+ + S +SQ ICL+ML+LFTS AA GCILLS+GQDEFH E   TL YVVNQSDYTVQ L+NVT YLSLAK ISVAQ++LPS+VM+DIDKLN DLN AADTL EKT EN+ KI+RVFNAVR  LITVAAVM
Sbjct:  139 IKDRGSPNSQRICLIMLLLFTSAAAVGCILLSVGQDEFHGEVFSTLKYVVNQSDYTVQTLRNVTGYLSLAKNISVAQIYLPSNVMSDIDKLNQDLNAAADTLAEKTSENSGKIRRVFNAVRSTLITVAAVM 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: F6HFK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04620 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.890e-56
Identity = 98/132 (74.24%), Postives = 110/132 (83.33%), Query Frame = -1

Query:    4 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399
            N +G  SDHS+ + L+MLILFT  AA GCILLSIGQDEFH EALHTL+YVVNQSDYTVQ L NVTQYL+LAKTI VAQV LPS+V  DIDKLN+DLN AA+ L EKT EN+ KIK+VFN V+ ALITVAAVM
Sbjct:  255 NAKGNGSDHSERVSLIMLILFTCAAAIGCILLSIGQDEFHREALHTLHYVVNQSDYTVQTLINVTQYLTLAKTIKVAQVLLPSNVNDDIDKLNVDLNKAANDLKEKTSENSAKIKKVFNTVQSALITVAAVM 386

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
W9R2J4_9ROSA	5.948e-63	77.44	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
M5XA99_PRUPE	8.096e-63	75.94	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A067KFS0_JATCU	3.841e-62	76.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067FMU2_CITSI	7.304e-61	74.44	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FNJ4_CITSI	1.034e-60	74.44	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FF54_CITSI	3.890e-60	74.44	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4W610_9ROSI	4.415e-60	74.44	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9HW92_POPTR	2.215e-57	75.00	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A059D7J2_EUCGR	1.689e-56	74.05	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
F6HFK0_VITVI	1.890e-56	74.24	Putative uncharacterized protein OS=Vitis vinifera...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31414	FAMILY NOT NAMED	coord: 1..117
None	No IPR available	PANTHER	PTHR31414:SF8	SUBFAMILY NOT NAMED	coord: 1..117
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..117
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.518

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001589 ID=g.arboreum_cottongen_reftransV1_0001589; Name=g.arboreum_cottongen_reftransV1_0001589; organism=Gossypium arboreum; type=contig; length=399bp
TAGCATCACAGCTGCCACGGTGATCAGTGCTAATCGTACAGCATTGAAGA
CTCTTTTTATTTTGACAGCATTTTCATCAGTCTTCTCAGTAAGTGTATCT
GCTGCAGTGTTTAGATCTATGTTCAACTTGTCAATGTCGGTCATGACATC
GGAAGGAAGGAAAACCTGAGCCACACTGATGGTTTTCGCTAGAGATAGGT
ACTGTGTAACATTCTTTAGGATCTGTACAGTATAGTCTGACTGATTTACA
ACATAATTCAAAGTATGCAACGCTTCATCATGAAATTCATCTTGCCCAAT
AGAAAGAAGAATACATCCAGTCGCAGCAACACTTGTGAACAATATGAGCA
TTACAAGACAAATAGTTTGTGAGTGATCTGATTTTTTTCCTTCGATGTT

Search form

g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum

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