g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003919
Unique Nameg.arboreum_cottongen_reftransV1_0003919
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length529
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0003919:1..529 .
Chr8:42480121..42482571 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A059CTP7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02898 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 9.102e-61
Identity = 129/175 (73.71%), Postives = 142/175 (81.14%), Query Frame = 3
Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGD-DLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP L+     +C  I    I+SLKIVFPGD  LKRPFC DRR+ PL ++ KGG   D D  PGAFYLTD ETVDYYWMVVF+PS IIF  SA YLVAG  VAYSAPT HGCLKVVENNYCAS+RGGVRCLSILN VFA+IFGLLA+FLGSSLLTLGSSCS+PLFWCYEI++W
Sbjct:   30 KLQRPALVLVTSAVCGLILACTIVSLKIVFPGDGTLKRPFCSDRRVLPLSIDEKGG---DADALPGAFYLTDAETVDYYWMVVFVPSAIIFAVSAVYLVAGFTVAYSAPTRHGCLKVVENNYCASRRGGVRCLSILNVVFAIIFGLLAIFLGSSLLTLGSSCSVPLFWCYEISTW 201          
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A087GJ19_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G189900 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.203e-60
Identity = 123/174 (70.69%), Postives = 142/174 (81.61%), Query Frame = 3
Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP LI  + ++C  IF   I+SLKIVFP + LKRPFC D +LQ LP+    G   D DLFPGAFYLTDQETVD+YWMVVF+PS +IFL S+ YLVAGI VAYSAP  HG LKVVEN+YCAS+RGG RCLSILN +FA+I+GLLA+FLGSSLLTLGS CS+PLFWCYEI+SW
Sbjct:   30 KLQRPTLISILALLCFVIFTCTIVSLKIVFPSNVLKRPFCSDVKLQSLPIY---GKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTVIFLVSSVYLVAGIFVAYSAPHRHGFLKVVENSYCASRRGGARCLSILNVMFAIIYGLLAIFLGSSLLTLGSRCSVPLFWCYEISSW 200          
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: G7ZWD3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_3g110075 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.718e-59
Identity = 123/174 (70.69%), Postives = 140/174 (80.46%), Query Frame = 3
Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+ I  + II +AI V  +ISLKIVFPG D KRPFC  R++Q + +  KGG   D  L PGAFYLTDQE  DYYWMVVFIPS I+F+ S  YL+AGI VAYSAPT HGCLKVV+NNYCAS+RGGVRCLSILN +FA+IFGLLALFLGSSLLT  S+CS PLFWCYE+ASW
Sbjct:   30 KLQRPVTISFVAIIWLAIIVSTVISLKIVFPGSDGKRPFCV-RKIQSIEIGMKGGSYSD--LIPGAFYLTDQEIADYYWMVVFIPSFIVFVLSGVYLIAGITVAYSAPTRHGCLKVVDNNYCASRRGGVRCLSILNLIFAIIFGLLALFLGSSLLTFMSNCSTPLFWCYEVASW 200          
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A078IH52_BRANA (BnaC03g66930D protein OS=Brassica napus GN=BnaC03g66930D PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.637e-59
Identity = 118/174 (67.82%), Postives = 141/174 (81.03%), Query Frame = 3
Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+L   +  +C  IF   ++SL+IVFP + L+RPFC D ++QPLP+    G   D DLFPGAFYLTDQETVD+YWMVVF+PS ++FL S+ YLVAGI VAYS P  H  LKVVENNYCAS+RGGVRCLSILN VFA+I+ LLA+FLGS+LLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPVLTSIVAFLCFVIFTCTVVSLRIVFPSNVLRRPFCSDVKVQPLPVY---GKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTVVFLVSSVYLVAGIFVAYSVPHRHWFLKVVENNYCASRRGGVRCLSILNVVFAIIYCLLAIFLGSTLLTLGSSCSMPLFWCYEISSW 200          
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A078I2F9_BRANA (BnaA08g12040D protein OS=Brassica napus GN=BnaA08g12040D PE=4 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.433e-59
Identity = 120/174 (68.97%), Postives = 141/174 (81.03%), Query Frame = 3
Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+L   +  +C  IF   ++SL+IVFP + L+RPFC D ++QPLP     G   D DLFPGAFYLTDQETVD+YWMVVF+PS I+FL S+ YLVAGI VAYS P  H  LKVVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGS+LLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPVLTSIVAFLCFVIFTCTVVSLRIVFPSNVLRRPFCSDVKVQPLP---TYGKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTIVFLVSSVYLVAGIFVAYSVPHRHWFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLGSTLLTLGSSCSMPLFWCYEISSW 200          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059CTP7_EUCGR9.102e-6173.71Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A087GJ19_ARAAL3.203e-6070.69Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
G7ZWD3_MEDTR1.718e-5970.69Transmembrane protein, putative OS=Medicago trunca... [more]
A0A078IH52_BRANA3.637e-5967.82BnaC03g66930D protein OS=Brassica napus GN=BnaC03g... [more]
A0A078I2F9_BRANA6.433e-5968.97BnaA08g12040D protein OS=Brassica napus GN=BnaA08g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36060FAMILY NOT NAMEDcoord: 1..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..112
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..153
NoneNo IPR availableTMHMMTMhelixcoord: 114..136
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003919 ID=g.arboreum_cottongen_reftransV1_0003919; Name=g.arboreum_cottongen_reftransV1_0003919; organism=Gossypium arboreum; type=contig; length=529bp
GGACGAAGCTACAAAGGCCGATCTTAATCGGTTCCATAGTGATCATTTGT
GTTGCGATCTTCGTTGGCATGATTATAAGCTTGAAGATTGTGTTTCCGGG
AGATGATTTGAAGCGACCGTTTTGCGATGACCGGAGACTGCAGCCTTTGC
CGTTGAATCCGAAAGGTGGAGGTGTCGACGATCCAGATCTGTTTCCCGGA
GCATTCTATTTGACTGATCAAGAAACCGTAGATTACTATTGGATGGTTGT
GTTCATTCCATCTATGATCATTTTTTTGGCTTCAGCTGCGTATCTGGTGG
CAGGAATTGTTGTTGCTTATTCTGCTCCAACTACGCATGGATGTTTAAAG
GTGGTTGAAAATAATTACTGTGCTTCAAAAAGAGGTGGAGTTCGCTGCTT
GTCTATTTTGAATGCGGTTTTTGCTCTCATTTTTGGTCTTCTTGCTTTGT
TCTTGGGCTCAAGCCTCCTCACATTAGGAAGTAGCTGCTCTTTGCCCCTG
TTTTGGTGCTACGAGATTGCTTCATGGGG
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