g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A059CTP7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02898 PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 9.102e-61 Identity = 129/175 (73.71%), Postives = 142/175 (81.14%), Query Frame = 3 Query: 6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGD-DLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527 KLQRP L+ +C I I+SLKIVFPGD LKRPFC DRR+ PL ++ KGG D D PGAFYLTD ETVDYYWMVVF+PS IIF SA YLVAG VAYSAPT HGCLKVVENNYCAS+RGGVRCLSILN VFA+IFGLLA+FLGSSLLTLGSSCS+PLFWCYEI++W Sbjct: 30 KLQRPALVLVTSAVCGLILACTIVSLKIVFPGDGTLKRPFCSDRRVLPLSIDEKGG---DADALPGAFYLTDAETVDYYWMVVFVPSAIIFAVSAVYLVAGFTVAYSAPTRHGCLKVVENNYCASRRGGVRCLSILNVVFAIIFGLLAIFLGSSLLTLGSSCSVPLFWCYEISTW 201
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A087GJ19_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G189900 PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 3.203e-60 Identity = 123/174 (70.69%), Postives = 142/174 (81.61%), Query Frame = 3 Query: 6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527 KLQRP LI + ++C IF I+SLKIVFP + LKRPFC D +LQ LP+ G D DLFPGAFYLTDQETVD+YWMVVF+PS +IFL S+ YLVAGI VAYSAP HG LKVVEN+YCAS+RGG RCLSILN +FA+I+GLLA+FLGSSLLTLGS CS+PLFWCYEI+SW Sbjct: 30 KLQRPTLISILALLCFVIFTCTIVSLKIVFPSNVLKRPFCSDVKLQSLPIY---GKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTVIFLVSSVYLVAGIFVAYSAPHRHGFLKVVENSYCASRRGGARCLSILNVMFAIIYGLLAIFLGSSLLTLGSRCSVPLFWCYEISSW 200
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: G7ZWD3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_3g110075 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.718e-59 Identity = 123/174 (70.69%), Postives = 140/174 (80.46%), Query Frame = 3 Query: 6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527 KLQRP+ I + II +AI V +ISLKIVFPG D KRPFC R++Q + + KGG D L PGAFYLTDQE DYYWMVVFIPS I+F+ S YL+AGI VAYSAPT HGCLKVV+NNYCAS+RGGVRCLSILN +FA+IFGLLALFLGSSLLT S+CS PLFWCYE+ASW Sbjct: 30 KLQRPVTISFVAIIWLAIIVSTVISLKIVFPGSDGKRPFCV-RKIQSIEIGMKGGSYSD--LIPGAFYLTDQEIADYYWMVVFIPSFIVFVLSGVYLIAGITVAYSAPTRHGCLKVVDNNYCASRRGGVRCLSILNLIFAIIFGLLALFLGSSLLTFMSNCSTPLFWCYEVASW 200
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A078IH52_BRANA (BnaC03g66930D protein OS=Brassica napus GN=BnaC03g66930D PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.637e-59 Identity = 118/174 (67.82%), Postives = 141/174 (81.03%), Query Frame = 3 Query: 6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527 KLQRP+L + +C IF ++SL+IVFP + L+RPFC D ++QPLP+ G D DLFPGAFYLTDQETVD+YWMVVF+PS ++FL S+ YLVAGI VAYS P H LKVVENNYCAS+RGGVRCLSILN VFA+I+ LLA+FLGS+LLTLGSSCS+PLFWCYEI+SW Sbjct: 30 KLQRPVLTSIVAFLCFVIFTCTVVSLRIVFPSNVLRRPFCSDVKVQPLPVY---GKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTVVFLVSSVYLVAGIFVAYSVPHRHWFLKVVENNYCASRRGGVRCLSILNVVFAIIYCLLAIFLGSTLLTLGSSCSMPLFWCYEISSW 200
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A078I2F9_BRANA (BnaA08g12040D protein OS=Brassica napus GN=BnaA08g12040D PE=4 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 6.433e-59 Identity = 120/174 (68.97%), Postives = 141/174 (81.03%), Query Frame = 3 Query: 6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527 KLQRP+L + +C IF ++SL+IVFP + L+RPFC D ++QPLP G D DLFPGAFYLTDQETVD+YWMVVF+PS I+FL S+ YLVAGI VAYS P H LKVVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGS+LLTLGSSCS+PLFWCYEI+SW Sbjct: 30 KLQRPVLTSIVAFLCFVIFTCTVVSLRIVFPSNVLRRPFCSDVKVQPLP---TYGKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTIVFLVSSVYLVAGIFVAYSVPHRHWFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLGSTLLTLGSSCSMPLFWCYEISSW 200 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003919 ID=g.arboreum_cottongen_reftransV1_0003919; Name=g.arboreum_cottongen_reftransV1_0003919; organism=Gossypium arboreum; type=contig; length=529bpback to top |