g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003919
Unique Name	g.arboreum_cottongen_reftransV1_0003919
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	529

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr8	chromosome	g.arboreum_cottongen_reftransV1_0003919:1..529 . Chr8:42480121..42482571 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A067GJ56_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022600mg PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.644e-66
Identity = 137/174 (78.74%), Postives = 148/174 (85.06%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP LI ++ +IC+ + V  I+SLKIVFP D  +RPFC D RLQPL +N KG G  D DLFPGAFYLTDQETVDYYWMVVFIPS IIFLAS  YLVAGI VAY+AP  HGCL VVENNYCASKRGGVRCLSILNAVFA+IFGLLALFLGSSLLTLGSSCS+PLFWCYEI SW
Sbjct:   30 KLQRPFLISALTLICIVVAVCTIVSLKIVFPSDYGRRPFCSDVRLQPLQINVKGEG-GDSDLFPGAFYLTDQETVDYYWMVVFIPSTIIFLASIVYLVAGITVAYTAPRRHGCLNVVENNYCASKRGGVRCLSILNAVFAIIFGLLALFLGSSLLTLGSSCSVPLFWCYEIGSW 202

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: V4UCW0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009066mg PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.644e-66
Identity = 137/174 (78.74%), Postives = 148/174 (85.06%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP LI ++ +IC+ + V  I+SLKIVFP D  +RPFC D RLQPL +N KG G  D DLFPGAFYLTDQETVDYYWMVVFIPS IIFLAS  YLVAGI VAY+AP  HGCL VVENNYCASKRGGVRCLSILNAVFA+IFGLLALFLGSSLLTLGSSCS+PLFWCYEI SW
Sbjct:   30 KLQRPFLISALTLICIVVAVCTIVSLKIVFPSDYGRRPFCSDVRLQPLQINVKGEG-GDSDLFPGAFYLTDQETVDYYWMVVFIPSTIIFLASIVYLVAGITVAYTAPRRHGCLNVVENNYCASKRGGVRCLSILNAVFAIIFGLLALFLGSSLLTLGSSCSVPLFWCYEIGSW 202

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: D7SUD4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03740 PE=4 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.194e-64
Identity = 129/174 (74.14%), Postives = 145/174 (83.33%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
             LQRP+LI S+ I+  AI +  +ISL IVFPG+  KRPFC D RLQ L ++   GG  D DLFPGAFYLTDQET DYYWMVVFIPSM+IF AS+ YL+AG+ VAYSAPT HGCLKVVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCS+ LFWCYE+ +W
Sbjct:   30 HLQRPLLICSLAIVTFAIVISTVISLNIVFPGNSAKRPFCGDPRLQQLSVSAAKGG--DSDLFPGAFYLTDQETADYYWMVVFIPSMLIFFASSVYLLAGMTVAYSAPTRHGCLKVVENNYCASKRGGVRCLSILNIVFAIIFGLLALFLGSSLLTLGSSCSITLFWCYEVGTW 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: I1JUS8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.500e-63
Identity = 123/174 (70.69%), Postives = 141/174 (81.03%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+ + S+ +I +AI V  +ISLKIVFP  D +R FC DRRLQP+ +  KGG   D DLFPGAFYLTDQE  DYYWM+VFIPSMI+F  S  YLVAG+ VAYSAP  HGCLKVVENNYCAS+RGGVRCLSILN +FA++FG LALFLGS+LLTL S+CS PLFWCYEIA W
Sbjct:   30 KLQRPVTVASVAVIVLAIAVSTVISLKIVFPSSDGRRAFCVDRRLQPIQIGMKGG--SDSDLFPGAFYLTDQEIADYYWMLVFIPSMIVFALSVVYLVAGMTVAYSAPNRHGCLKVVENNYCASRRGGVRCLSILNLIFAIVFGGLALFLGSTLLTLMSNCSKPLFWCYEIACW 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: Q8LA21_ARATH (At4g32750 OS=Arabidopsis thaliana GN=At4g32750 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.219e-63
Identity = 129/174 (74.14%), Postives = 144/174 (82.76%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP L+  +  +C  IF   I+SLKIVFP + LKRPFC D +LQPLP+    G   D DLFPGAFYLTDQETVDYYWMVVF+PS IIFL S+ YLVAGI VAYSAP  HG LKVVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGSSLLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPTLVSIVAFLCFVIFTCTIVSLKIVFPSNVLKRPFCSDIKLQPLPIY---GKARDSDLFPGAFYLTDQETVDYYWMVVFVPSTIIFLVSSVYLVAGIFVAYSAPHRHGFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLGSSLLTLGSSCSVPLFWCYEISSW 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: V4MM49_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025880mg PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.756e-63
Identity = 127/174 (72.99%), Postives = 144/174 (82.76%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP L+  +  +C  IF   I+SLKIVFP + L+RPFC DR+LQPLP+    G   D DLFPGAFYLTDQETVD+YWMVVF+PS IIFL S+ YLVAGI VAYSAP  HG L VVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGSSLLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPTLMSIVAFLCFVIFTCTIVSLKIVFPSNVLRRPFCSDRKLQPLPIY---GKARDSDLFPGAFYLTDQETVDFYWMVVFVPSTIIFLVSSVYLVAGIFVAYSAPHRHGFLNVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLGSSLLTLGSSCSVPLFWCYEISSW 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: V7AV79_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G107000g PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.437e-62
Identity = 124/174 (71.26%), Postives = 142/174 (81.61%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+ + S++ I +AIFV  +IS+KIVFP  D +R  C DRRLQ + +  KG    D D FPGAFYLTDQE  DYYWMVVFIPSMI+F  SA YLVAG+ VAYSAPT HGCLKVVENN+CAS+RGGVRCLSILN +FA+IFGLLALFLGSSLLT+ S+CS PLFWCYEIASW
Sbjct:   30 KLQRPVTVISVITIGLAIFVSTVISMKIVFPSSDGRRALCVDRRLQSIQIGMKGD--SDSDRFPGAFYLTDQEIADYYWMVVFIPSMIVFALSAVYLVAGMAVAYSAPTRHGCLKVVENNFCASRRGGVRCLSILNLIFAIIFGLLALFLGSSLLTMVSNCSKPLFWCYEIASW 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: R0H0Z8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005389mg PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 6.742e-62
Identity = 128/174 (73.56%), Postives = 143/174 (82.18%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP L+  +  +C  IF   I+SLKIVFP + LKRPFC D +LQPLP+    G   D DLFPGAFYLTDQETVDYYWMVVF+PS IIFL S+ YLVAGI VAYSAP  H  LKVVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGSSLLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPTLMSIVAFLCFVIFTCTIVSLKIVFPSNVLKRPFCSDVKLQPLPMY---GKARDSDLFPGAFYLTDQETVDYYWMVVFLPSTIIFLVSSVYLVAGIFVAYSAPHRHRFLKVVENNYCASRRGGVRCLSILNIVFAIIYGLLAVFLGSSLLTLGSSCSVPLFWCYEISSW 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: M5XC85_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009868mg PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.115e-61
Identity = 131/174 (75.29%), Postives = 145/174 (83.33%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            K+QRP+L+ S+ ++C  + V  +ISL IVFPGD  KRPFC DRRL  LP+N +GG   D D FPGAFYLTDQE  DYYWMVVF+PSMIIFLA+  YLVAGI VAYSAPT HGCLKVVENNYCASKRGGVRCLSILNAVFA+IFGLLALFLGSSLLT GSSCS+PLFWCYE   W
Sbjct:   30 KIQRPLLMASMALVCFVVVVCTVISLNIVFPGDPAKRPFCGDRRLNSLPMNVRGG---DSDPFPGAFYLTDQEIADYYWMVVFVPSMIIFLATFVYLVAGIAVAYSAPTRHGCLKVVENNYCASKRGGVRCLSILNAVFAVIFGLLALFLGSSLLTQGSSCSMPLFWCYEGGCW 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: D7M9P8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913164 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.301e-61
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP L+  + ++   IF   I+SLKIVFP + LKRPFC D +LQPLP+    G   D DLFPGAFYLTDQETVDYYWMVVF+PS IIFL S+ YLVAGI VAYSAP  HG LKVVENNYCAS+RGGVRCLSILN VFA+I+GLLA+FLGSSLLTLGSSCS+PLFWCYEI+SW
Sbjct:   30 KLQRPTLMYIVALLSFVIFTCTIVSLKIVFPSNVLKRPFCSDVKLQPLPIY---GKARDSDLFPGAFYLTDQETVDYYWMVVFVPSTIIFLVSSVYLVAGIFVAYSAPHRHGFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAIFLGSSLLTLGSSCSVPLFWCYEISSW 200

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067GJ56_CITSI	1.644e-66	78.74	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4UCW0_9ROSI	1.644e-66	78.74	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
D7SUD4_VITVI	1.194e-64	74.14	Putative uncharacterized protein OS=Vitis vinifera...	[more]
I1JUS8_SOYBN	1.500e-63	70.69	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
Q8LA21_ARATH	5.219e-63	74.14	At4g32750 OS=Arabidopsis thaliana GN=At4g32750 PE=...	[more]
V4MM49_EUTSA	8.756e-63	72.99	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
V7AV79_PHAVU	4.437e-62	71.26	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
R0H0Z8_9BRAS	6.742e-62	73.56	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
M5XC85_PRUPE	1.115e-61	75.29	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
D7M9P8_ARALL	1.301e-61	73.56	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36060	FAMILY NOT NAMED	coord: 1..153
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..84
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 113..136
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 85..112
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 137..153
None	No IPR available	TMHMM	TMhelix		coord: 114..136
None	No IPR available	TMHMM	TMhelix		coord: 56..78

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003919 ID=g.arboreum_cottongen_reftransV1_0003919; Name=g.arboreum_cottongen_reftransV1_0003919; organism=Gossypium arboreum; type=contig; length=529bp
GGACGAAGCTACAAAGGCCGATCTTAATCGGTTCCATAGTGATCATTTGT
GTTGCGATCTTCGTTGGCATGATTATAAGCTTGAAGATTGTGTTTCCGGG
AGATGATTTGAAGCGACCGTTTTGCGATGACCGGAGACTGCAGCCTTTGC
CGTTGAATCCGAAAGGTGGAGGTGTCGACGATCCAGATCTGTTTCCCGGA
GCATTCTATTTGACTGATCAAGAAACCGTAGATTACTATTGGATGGTTGT
GTTCATTCCATCTATGATCATTTTTTTGGCTTCAGCTGCGTATCTGGTGG
CAGGAATTGTTGTTGCTTATTCTGCTCCAACTACGCATGGATGTTTAAAG
GTGGTTGAAAATAATTACTGTGCTTCAAAAAGAGGTGGAGTTCGCTGCTT
GTCTATTTTGAATGCGGTTTTTGCTCTCATTTTTGGTCTTCTTGCTTTGT
TCTTGGGCTCAAGCCTCCTCACATTAGGAAGTAGCTGCTCTTTGCCCCTG
TTTTGGTGCTACGAGATTGCTTCATGGGG

Search form

g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum

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