g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: E4MYD1_EUTHA (mRNA, clone: RTFL01-49-H19 OS=Eutrema halophilum PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.945e-67 Identity = 146/222 (65.77%), Postives = 174/222 (78.38%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAV+ LL G IRVGVL+ GKKVRDD +TL QTGIS ++NL LGFTLEPGP P P+CSE+P + + P NL+ +P LD+GI P+ + NS VD+N E V Q+D+ D++ S+SRALVPVPA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP Sbjct: 371 VMEAVSVLLSGGIRVGVLVHGKKVRDDRKTLTQTGISCDENLSNLGFTLEPGPSKVPVPLCSEDPVVP----TDPINLSERSEASPTLDSGI----PNADDMINSGDIVDNNLELVPYQSDLSVDEHSSDSRALVPVPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 584
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: V4LY36_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020283mg PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.945e-67 Identity = 146/222 (65.77%), Postives = 174/222 (78.38%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAV+ LL G IRVGVL+ GKKVRDD +TL QTGIS ++NL LGFTLEPGP P P+CSE+P + + P NL+ +P LD+GI P+ + NS VD+N E V Q+D+ D++ S+SRALVPVPA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP Sbjct: 371 VMEAVSVLLSGGIRVGVLVHGKKVRDDRKTLTQTGISCDENLSNLGFTLEPGPSKVPVPLCSEDPVVP----TDPINLSERSEASPTLDSGI----PNADDMINSGDIVDNNLELVPYQSDLSVDEHSSDSRALVPVPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 584
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: R0I157_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013179mg PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.153e-66 Identity = 146/222 (65.77%), Postives = 172/222 (77.48%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAV+ LL G IRVGVLL GKKVRDD +TL QTGIS ++NLD LGFTLEPGP P P+CSE+P + P N++ +P LD+GI P + NS VD+N E V Q D+ D+ LS+S+ALVP+PA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP Sbjct: 381 VMEAVSVLLSGGIRVGVLLHGKKVRDDRKTLSQTGISCDENLDNLGFTLEPGPSKVPLPLCSEDPA----EPTDPTNMSERSAASPMLDSGI----PHADDVINSGNIVDNNLEIVPYQCDISADEPLSDSKALVPLPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 594
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2UYA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266100 PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.713e-65 Identity = 149/193 (77.20%), Postives = 164/193 (84.97%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKL 580 VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS E+NLD+LGFTLEPGP AP P+CSEEPPL + APQ LTS L TP +D I ATPDP LLTN+A PVDSN+E VSSQTD+LTDQ+LSESRA+VPVPAMNVEALAV+P + K+RK+ELAQRRTRRPFSV EVEALVQAVEELGTGR+ V L Sbjct: 404 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEENLDSLGFTLEPGPAKAPPPVCSEEPPLLISCDKAPQQLTS-LPATPVVDMAIPDATPDPLLLTNTAHPVDSNHEPVSSQTDVLTDQSLSESRAIVPVPAMNVEALAVIPASPKVRKTELAQRRTRRPFSVLEVEALVQAVEELGTGRYVTVLL 595
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: W9R2A7_9ROSA (Telomere repeat-binding protein 4 OS=Morus notabilis GN=L484_025330 PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.027e-65 Identity = 153/225 (68.00%), Postives = 179/225 (79.56%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSA--PQNLTSSLVVTPALDTGISAATPD-PPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAVTA+LGG + VGVL +GKK+RDD+RTLLQTG+S +DN+DALGFTLEP + A +CSE+ Q P S P+ L S VTP +DT IS A P+ PP +TN+ +N+E V SQTD+LTD + +SRALV VP ++VEALAVVPVN + +KSEL QRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP Sbjct: 405 VMEAVTAILGGGLHVGVLFEGKKIRDDNRTLLQTGLSFKDNIDALGFTLEPNIMQAFPALCSED---QRPSLSCDTPEPLARS-PVTPVVDTEISDALPELPPSVTNTETHALNNHETVCSQTDVLTDSTMPDSRALVVVPPVSVEALAVVPVNPENKKSELVQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTATISP 625
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.311e-63 Identity = 139/222 (62.61%), Postives = 169/222 (76.13%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAV+ LL G IRVGVL+ GKKVRD+ +TL QTGIS ++NLD LGFTLEP P P P+CSE+P + + P +L+ +P LD+GI P + +S VDSN E V Q D+ D+ S+S+ LVP+P + V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP Sbjct: 353 VMEAVSVLLSGGIRVGVLMHGKKVRDERKTLSQTGISCDENLDNLGFTLEPSPSKVPLPLCSEDPAVP----TDPTSLSERSAASPMLDSGI----PHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISP 566
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.053e-60 Identity = 140/223 (62.78%), Postives = 166/223 (74.44%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQN-LSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 V EAVTALLGG IR+GVL+QGKKVRDD+ TL QTG+S +NL LGFTLEPG P P+CSE P L LP S L+ +PAL+TGI D L N V++N E V +D+ D+ S+SRALVPV A+ +ALA+VPVN+K +++EL+QRRTRRPFSV+EVEALV AVEE+GTGRWRDVKLR+FENA HRTYVDLKDKWKTLVHTA ISP Sbjct: 372 VKEAVTALLGGGIRIGVLVQGKKVRDDNNTLSQTGLSCRENLGNLGFTLEPGLETLPVPLCSETPVLSLPTDST--KLSERSAASPALETGIPLPPQDEDYLINLGNSVENNDELVPHLSDIPADEQPSSDSRALVPVLALESDALALVPVNEKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISP 592
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.562e-42 Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 V+EAVT++LGG +R+GVL+ GKKVRDDS+ LLQTG+S + D LGF LEP P + +P+ E+ P + P LT L P P AKP +S + S+ SRAL+PV ++ +AL VVP +K ++SE+AQRR RRPFSV+EVEALVQAVE LGTGRWRDVKLRAF+NA HRTYVDLKDKWKTLVHTA+ISP Sbjct: 383 VLEAVTSILGGGLRIGVLVHGKKVRDDSKMLLQTGLSLDTLSDTLGFCLEPNPPQSTKPLSPEDSDFARP-CNVPHTLTRCL--------------PSP---GKHAKPSNSVESDLDSKPSAPNRGKTIYSRALIPVSPLHAQALTVVPP-RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISP 585
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.315e-40 Identity = 122/227 (53.74%), Postives = 151/227 (66.52%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDN-LDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSE---LAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAVT +LG +RVG+++QGKKVRDD +TLLQTGIS E+N LD+LGF+LEP P+P L SS + A D D L ++A +DS++E S D S+ SRAL+PV + + LA P N+K +++E AQRR RRPFSV+EVEALVQAVE+LGTGRWRDVK+RAFE+ADHRTYVDLKDKWKTLVHTA+ISP Sbjct: 314 VMEAVTTILGDGLRVGLMVQGKKVRDDGKTLLQTGISEENNHLDSLGFSLEPSLETTPQP------------------LLSSYLSDHACD--------DVTLCHDNA--LDSSHEPEPSPADSFGKLGTSDHSRALIPVASAAM--LAPRPPNRKFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISP 510
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 2.250e-28 Identity = 96/224 (42.86%), Postives = 130/224 (58.04%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLE--PGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 V +AVT ++ +RVG+LLQGK +++D++TL Q GI L+ +GFTLE G P I EE + + VV + + L+ + S+ V + T + + S+A+VP N ALA VP+++ ++ + QRR RRPF+V+EVE LV+AVE LGTGRWRDVK RAFEN HRTYVDLKDKWKTLVHTA I+P Sbjct: 380 VSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEE-----------MDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRS-KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 591
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP1_ARATH (Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 6.009e-27 Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 2 Query: 2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSED-NLDALGFTLEPGPVIAPRPICSEEPPL--QLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRR-----PFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667 VMEAV+ LL RVG+++QGKKVRDD++TL QTGIS ++ +LD+L F+LEP SE P L P G A + L T +D + + D L P DS L + N++E S+A++ V A+N + P ++K R+SE Q++ + PFSV+EVEALVQAVE+LGTGRWRDVKL AFE+ADHRTYVDLKDKWKTLVHTAKISP Sbjct: 322 VMEAVSTLLSDGHRVGLMVQGKKVRDDNKTLHQTGISQDNSHLDSLDFSLEPS---------SEMPQLLTSHPLGHACEELLPVCQATK-IDNVLESDHHDSALF-----PSDS-----------LGNNNVTEDSKAMISV-ALNELSSQSQPPSRKSRRSEQQQQQAAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 525
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP6_ARATH (Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.582e-20 Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2 Query: 425 VEALAVVPVNQK-IRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKIS 664 V A +VVPV K + E+ QRR RRPF+VSEVEALVQAVE LGTGRWRDVK AF + +HRTYVDLKDKWKTLVHTAKIS Sbjct: 291 VAAKSVVPVRMKPAWQPEMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKIS 371 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 7
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005544 ID=g.arboreum_cottongen_reftransV1_0005544; Name=g.arboreum_cottongen_reftransV1_0005544; organism=Gossypium arboreum; type=contig; length=667bpback to top |