g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005544
Unique Nameg.arboreum_cottongen_reftransV1_0005544
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length667
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0005544:1..667 .
Chr13:74215725..74216874 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: E4MYD1_EUTHA (mRNA, clone: RTFL01-49-H19 OS=Eutrema halophilum PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.945e-67
Identity = 146/222 (65.77%), Postives = 174/222 (78.38%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVL+ GKKVRDD +TL QTGIS ++NL  LGFTLEPGP   P P+CSE+P +     + P NL+     +P LD+GI    P+   + NS   VD+N E V  Q+D+  D++ S+SRALVPVPA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  371 VMEAVSVLLSGGIRVGVLVHGKKVRDDRKTLTQTGISCDENLSNLGFTLEPGPSKVPVPLCSEDPVVP----TDPINLSERSEASPTLDSGI----PNADDMINSGDIVDNNLELVPYQSDLSVDEHSSDSRALVPVPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 584          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: V4LY36_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020283mg PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.945e-67
Identity = 146/222 (65.77%), Postives = 174/222 (78.38%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVL+ GKKVRDD +TL QTGIS ++NL  LGFTLEPGP   P P+CSE+P +     + P NL+     +P LD+GI    P+   + NS   VD+N E V  Q+D+  D++ S+SRALVPVPA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  371 VMEAVSVLLSGGIRVGVLVHGKKVRDDRKTLTQTGISCDENLSNLGFTLEPGPSKVPVPLCSEDPVVP----TDPINLSERSEASPTLDSGI----PNADDMINSGDIVDNNLELVPYQSDLSVDEHSSDSRALVPVPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 584          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: R0I157_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013179mg PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.153e-66
Identity = 146/222 (65.77%), Postives = 172/222 (77.48%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVLL GKKVRDD +TL QTGIS ++NLD LGFTLEPGP   P P+CSE+P       + P N++     +P LD+GI    P    + NS   VD+N E V  Q D+  D+ LS+S+ALVP+PA+ V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  381 VMEAVSVLLSGGIRVGVLLHGKKVRDDRKTLSQTGISCDENLDNLGFTLEPGPSKVPLPLCSEDPA----EPTDPTNMSERSAASPMLDSGI----PHADDVINSGNIVDNNLEIVPYQCDISADEPLSDSKALVPLPALEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTASISP 594          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2UYA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266100 PE=4 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.713e-65
Identity = 149/193 (77.20%), Postives = 164/193 (84.97%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKL 580
            VMEAVTALLGG IRVGVLLQGKKVRDDSRTL QTGIS E+NLD+LGFTLEPGP  AP P+CSEEPPL +    APQ LTS L  TP +D  I  ATPDP LLTN+A PVDSN+E VSSQTD+LTDQ+LSESRA+VPVPAMNVEALAV+P + K+RK+ELAQRRTRRPFSV EVEALVQAVEELGTGR+  V L
Sbjct:  404 VMEAVTALLGGGIRVGVLLQGKKVRDDSRTLSQTGISCEENLDSLGFTLEPGPAKAPPPVCSEEPPLLISCDKAPQQLTS-LPATPVVDMAIPDATPDPLLLTNTAHPVDSNHEPVSSQTDVLTDQSLSESRAIVPVPAMNVEALAVIPASPKVRKTELAQRRTRRPFSVLEVEALVQAVEELGTGRYVTVLL 595          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: W9R2A7_9ROSA (Telomere repeat-binding protein 4 OS=Morus notabilis GN=L484_025330 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.027e-65
Identity = 153/225 (68.00%), Postives = 179/225 (79.56%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSA--PQNLTSSLVVTPALDTGISAATPD-PPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTA+LGG + VGVL +GKK+RDD+RTLLQTG+S +DN+DALGFTLEP  + A   +CSE+   Q P  S   P+ L  S  VTP +DT IS A P+ PP +TN+     +N+E V SQTD+LTD  + +SRALV VP ++VEALAVVPVN + +KSEL QRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  405 VMEAVTAILGGGLHVGVLFEGKKIRDDNRTLLQTGLSFKDNIDALGFTLEPNIMQAFPALCSED---QRPSLSCDTPEPLARS-PVTPVVDTEISDALPELPPSVTNTETHALNNHETVCSQTDVLTDSTMPDSRALVVVPPVSVEALAVVPVNPENKKSELVQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTATISP 625          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.311e-63
Identity = 139/222 (62.61%), Postives = 169/222 (76.13%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVL+ GKKVRD+ +TL QTGIS ++NLD LGFTLEP P   P P+CSE+P +     + P +L+     +P LD+GI    P    + +S   VDSN E V  Q D+  D+  S+S+ LVP+P + V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  353 VMEAVSVLLSGGIRVGVLMHGKKVRDERKTLSQTGISCDENLDNLGFTLEPSPSKVPLPLCSEDPAVP----TDPTSLSERSAASPMLDSGI----PHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISP 566          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.053e-60
Identity = 140/223 (62.78%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQN-LSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V EAVTALLGG IR+GVL+QGKKVRDD+ TL QTG+S  +NL  LGFTLEPG    P P+CSE P L LP  S    L+     +PAL+TGI     D   L N    V++N E V   +D+  D+   S+SRALVPV A+  +ALA+VPVN+K +++EL+QRRTRRPFSV+EVEALV AVEE+GTGRWRDVKLR+FENA HRTYVDLKDKWKTLVHTA ISP
Sbjct:  372 VKEAVTALLGGGIRIGVLVQGKKVRDDNNTLSQTGLSCRENLGNLGFTLEPGLETLPVPLCSETPVLSLPTDST--KLSERSAASPALETGIPLPPQDEDYLINLGNSVENNDELVPHLSDIPADEQPSSDSRALVPVLALESDALALVPVNEKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISP 592          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.562e-42
Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAVT++LGG +R+GVL+ GKKVRDDS+ LLQTG+S +   D LGF LEP P  + +P+  E+     P  + P  LT  L              P P      AKP +S    + S+           SRAL+PV  ++ +AL VVP  +K ++SE+AQRR RRPFSV+EVEALVQAVE LGTGRWRDVKLRAF+NA HRTYVDLKDKWKTLVHTA+ISP
Sbjct:  383 VLEAVTSILGGGLRIGVLVHGKKVRDDSKMLLQTGLSLDTLSDTLGFCLEPNPPQSTKPLSPEDSDFARP-CNVPHTLTRCL--------------PSP---GKHAKPSNSVESDLDSKPSAPNRGKTIYSRALIPVSPLHAQALTVVPP-RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISP 585          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.315e-40
Identity = 122/227 (53.74%), Postives = 151/227 (66.52%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDN-LDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSE---LAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVT +LG  +RVG+++QGKKVRDD +TLLQTGIS E+N LD+LGF+LEP     P+P                  L SS +   A D        D  L  ++A  +DS++E   S  D       S+ SRAL+PV +  +  LA  P N+K +++E    AQRR RRPFSV+EVEALVQAVE+LGTGRWRDVK+RAFE+ADHRTYVDLKDKWKTLVHTA+ISP
Sbjct:  314 VMEAVTTILGDGLRVGLMVQGKKVRDDGKTLLQTGISEENNHLDSLGFSLEPSLETTPQP------------------LLSSYLSDHACD--------DVTLCHDNA--LDSSHEPEPSPADSFGKLGTSDHSRALIPVASAAM--LAPRPPNRKFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISP 510          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.250e-28
Identity = 96/224 (42.86%), Postives = 130/224 (58.04%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLE--PGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V +AVT ++   +RVG+LLQGK +++D++TL Q GI     L+ +GFTLE   G    P  I  EE            +   + VV  +          +  L+ +      S+   V    +  T +  + S+A+VP    N  ALA VP+++  ++ +  QRR RRPF+V+EVE LV+AVE LGTGRWRDVK RAFEN  HRTYVDLKDKWKTLVHTA I+P
Sbjct:  380 VSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEE-----------MDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRS-KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 591          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP1_ARATH (Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.009e-27
Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 2
Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSED-NLDALGFTLEPGPVIAPRPICSEEPPL--QLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRR-----PFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL    RVG+++QGKKVRDD++TL QTGIS ++ +LD+L F+LEP          SE P L    P G A + L      T  +D  + +   D  L      P DS           L + N++E S+A++ V A+N  +    P ++K R+SE  Q++  +     PFSV+EVEALVQAVE+LGTGRWRDVKL AFE+ADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  322 VMEAVSTLLSDGHRVGLMVQGKKVRDDNKTLHQTGISQDNSHLDSLDFSLEPS---------SEMPQLLTSHPLGHACEELLPVCQATK-IDNVLESDHHDSALF-----PSDS-----------LGNNNVTEDSKAMISV-ALNELSSQSQPPSRKSRRSEQQQQQAAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 525          
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP6_ARATH (Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.582e-20
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2
Query:  425 VEALAVVPVNQK-IRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKIS 664
            V A +VVPV  K   + E+ QRR RRPF+VSEVEALVQAVE LGTGRWRDVK  AF + +HRTYVDLKDKWKTLVHTAKIS
Sbjct:  291 VAAKSVVPVRMKPAWQPEMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKIS 371          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
E4MYD1_EUTHA1.945e-6765.77mRNA, clone: RTFL01-49-H19 OS=Eutrema halophilum P... [more]
V4LY36_EUTSA1.945e-6765.77Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
R0I157_9BRAS1.153e-6665.77Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0D2UYA9_GOSRA1.713e-6577.20Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9R2A7_9ROSA4.027e-6568.00Telomere repeat-binding protein 4 OS=Morus notabil... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRP3_ARATH3.311e-6362.61Telomere repeat-binding protein 3 OS=Arabidopsis t... [more]
TRP4_ARATH1.053e-6062.78Telomere repeat-binding protein 4 OS=Arabidopsis t... [more]
TRP5_ARATH1.562e-4253.60Telomere repeat-binding protein 5 OS=Arabidopsis t... [more]
TRP2_ARATH2.315e-4053.74Telomere repeat-binding protein 2 OS=Arabidopsis t... [more]
TBP1_ORYSJ2.250e-2842.86Telomere-binding protein 1 OS=Oryza sativa subsp. ... [more]
TRP1_ARATH6.009e-2748.92Telomere repeat-binding protein 1 OS=Arabidopsis t... [more]
TRP6_ARATH1.582e-2074.07Telomere repeat-binding protein 6 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 163..216
e-value: 1.6E-7
score: 41.0
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 164..213
e-value: 1.5E-5
score: 24.9
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 164..214
e-value: 2.0E-10
score: 40.0
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 161..215
NoneNo IPR availablePANTHERPTHR21717:SF9PROTEIN TBF1coord: 1..221
NoneNo IPR availablePANTHERPTHR21717TELOMERIC REPEAT BINDING PROTEINcoord: 1..221
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 159..218
score: 16.376

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005544 ID=g.arboreum_cottongen_reftransV1_0005544; Name=g.arboreum_cottongen_reftransV1_0005544; organism=Gossypium arboreum; type=contig; length=667bp
TGTAATGGAGGCGGTGACTGCCTTACTTGGAGGTAGAATCCGTGTTGGGG
TACTCCTTCAAGGGAAGAAAGTGAGAGATGACAGTCGAACTCTATTACAA
ACCGGTATTTCATCTGAAGACAATTTGGATGCTCTGGGTTTCACTTTGGA
GCCTGGTCCCGTGATAGCTCCTCGACCTATATGCTCCGAAGAACCCCCTC
TACAGTTGCCACGTGGCTCTGCCCCTCAAAATTTAACAAGCTCTTTAGTA
GTCACACCAGCCTTAGATACGGGGATTTCAGCTGCCACACCTGACCCACC
TTTACTGACCAATTCAGCAAAACCTGTGGATAGTAATTATGAACACGTTT
CCTCCCAAACTGACATGCTAACCGATCAAAATCTGTCAGAGTCTAGAGCT
CTGGTTCCAGTTCCAGCGATGAATGTCGAGGCACTAGCTGTTGTCCCTGT
CAACCAGAAAATTCGGAAATCTGAGCTTGCACAGCGTAGAACCAGGAGGC
CATTTTCCGTGTCAGAAGTAGAAGCATTGGTACAGGCTGTTGAGGAGCTC
GGAACCGGAAGGTGGCGGGATGTTAAATTGCGAGCTTTTGAGAATGCTGA
CCATCGAACTTATGTGGATCTGAAGGATAAATGGAAAACATTGGTTCACA
CAGCAAAAATTTCGCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding