g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0005544
Unique Name	g.arboreum_cottongen_reftransV1_0005544
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr13	chromosome	g.arboreum_cottongen_reftransV1_0005544:1..667 . Chr13:74215725..74216874 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: V4T6G5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030878mg PE=4 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.195e-74
Identity = 157/222 (70.72%), Postives = 185/222 (83.33%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VM+ VTA+LGG IRVGVLL GKK+RDD+RTL Q+GISSEDN+D+LGFTLEP  V+AP P+CSE+PPL LP  S PQ L      TPA+D+GI  +  DP  +TN    V+SN+E ++S T +LTD    +SRALVPVPA +V+ALAVVPVNQKIR+S++AQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLR+FE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  404 VMDMVTAILGGGIRVGVLLNGKKIRDDNRTLSQSGISSEDNMDSLGFTLEPSSVLAPSPVCSEDPPLMLP-SSTPQ-LVQRSPATPAVDSGIPNSLSDPSPITNLTNRVESNHEAMTSHT-VLTDTTSPDSRALVPVPATDVDALAVVPVNQKIRRSDIAQRRTRRPFSVAEVEALVQAVEELGTGRWRDVKLRSFEHADHRTYVDLKDKWKTLVHTASISP 622

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: V4TGG3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030878mg PE=4 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.338e-74
Identity = 157/222 (70.72%), Postives = 185/222 (83.33%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VM+ VTA+LGG IRVGVLL GKK+RDD+RTL Q+GISSEDN+D+LGFTLEP  V+AP P+CSE+PPL LP  S PQ L      TPA+D+GI  +  DP  +TN    V+SN+E ++S T +LTD    +SRALVPVPA +V+ALAVVPVNQKIR+S++AQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLR+FE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  414 VMDMVTAILGGGIRVGVLLNGKKIRDDNRTLSQSGISSEDNMDSLGFTLEPSSVLAPSPVCSEDPPLMLP-SSTPQ-LVQRSPATPAVDSGIPNSLSDPSPITNLTNRVESNHEAMTSHT-VLTDTTSPDSRALVPVPATDVDALAVVPVNQKIRRSDIAQRRTRRPFSVAEVEALVQAVEELGTGRWRDVKLRSFEHADHRTYVDLKDKWKTLVHTASISP 632

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A0D2UFW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G200900 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.065e-73
Identity = 167/226 (73.89%), Postives = 186/226 (82.30%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVP----AMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVTAL+GG IRVG+LLQGKKVRDDSRTL Q GIS +DNLDALGFTLEPGP  AP  +CSEEPPL L   +APQNLTSSL  TPA++TGI   T +  LLTNS  P  +++E +SS+TDM TDQ+L E RALVPVP    A NVEAL  V VNQ  +KSELAQRR  RPFS+SEVEALVQAVEE+GTGRWRDVKLRAFE+ADHRTYV+LKDKWKTLVHTAKISP
Sbjct:  375 VMEAVTALIGGGIRVGLLLQGKKVRDDSRTLSQAGISCDDNLDALGFTLEPGPAKAPPTMCSEEPPLLLSYDAAPQNLTSSLA-TPAVNTGIPNCTSNLHLLTNSENPA-TDHEPISSKTDMPTDQSLLEPRALVPVPVPVPATNVEALTAVAVNQSFQKSELAQRRIWRPFSISEVEALVQAVEEIGTGRWRDVKLRAFESADHRTYVNLKDKWKTLVHTAKISP 598

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: A0A067LKS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01439 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.644e-72
Identity = 155/222 (69.82%), Postives = 181/222 (81.53%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VM+AVT +LGG +RVG+LL GKKVRDD+RTL QTGISS++NLD LGFTLEPG +  P  +C+E+ PL LP  ++   + S     P L++G S A PDP  LTNS   +DSN+E +SS  D LTD+ LS+SRALV VP ++VEALAVVPVNQK R+SEL QRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLR+FENADHRTYVDLKDKWKTLVHTAKI+P
Sbjct:  431 VMDAVTGILGGGLRVGMLLHGKKVRDDNRTLSQTGISSKENLDTLGFTLEPGLLQTP-TVCTEDSPLPLPCNNSQLAVRSP--TAPVLNSGNSDAPPDPLALTNSGNNLDSNHELISSHNDKLTDKTLSDSRALVAVPPVSVEALAVVPVNQKARRSELVQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRSFENADHRTYVDLKDKWKTLVHTAKIAP 649

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: B9HMJ1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05740g PE=4 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.308e-71
Identity = 150/222 (67.57%), Postives = 182/222 (81.98%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAV+A+LG  +RVGVLL G KVRDD+RTLLQTG++S++NLD LGF+LEP PV AP P+C+E+P L LP  ++   L SS   TP +D+GIS A PDPP  TN     +SN+E VSS +DM+TD  LS+SRALV VP +N EALA+VP+N K ++SEL QRRTRRPFSVSEVEALV AVEE+GTGRWRDVKLR+FE+ADHRTYVDLKDKWKTLVHTA+I+P
Sbjct:  432 VLEAVSAVLGSGLRVGVLLHGMKVRDDNRTLLQTGMTSKENLDTLGFSLEPIPVQAPPPLCTEDPAL-LPCDTS--QLISSSPTTPIIDSGISDALPDPPPSTNLDTNTESNHESVSSHSDMVTDDTLSDSRALVAVPPINAEALAMVPLNPKSKRSELVQRRTRRPFSVSEVEALVHAVEEVGTGRWRDVKLRSFEDADHRTYVDLKDKWKTLVHTARIAP 650

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: U5FZ61_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20990g PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.721e-68
Identity = 147/222 (66.22%), Postives = 177/222 (79.73%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAV+A+LGG +RVGVLL GKKVRDD+RTLLQTGI+S +NLD LGF+LEP PV    P+C+E+P   LP  ++   L S    TP +D+G+S A PDPP LTN    ++SN E VSS  D++TD  L +SRALV VP +N E LA+VP+NQK ++SEL QRRTRRPFSVSEVEALV AVEELGTGRWRDVKL +FE+ADHRTYVDLKDKWKTLVHTA+I+P
Sbjct:  413 VVEAVSAILGGGLRVGVLLHGKKVRDDNRTLLQTGITSNENLDTLGFSLEPTPVQVSPPLCTEDPAALLPCDTSQLILRSP--TTPIVDSGVSDALPDPPPLTNLDTNIESNRESVSSHADIVTDNTLPDSRALVAVPPVNAEELAMVPLNQKSKRSELVQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLVHTAQIAP 632

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: M5XT46_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002374mg PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.204e-68
Identity = 150/226 (66.37%), Postives = 176/226 (77.88%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVV----TPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV ++L G + VGVL+ GKKVRDD+RTLLQTGIS +DNLD+LGFTLEP  V AP  +CS +PP  L         TS L+     TP LD+ +S    +PP LT+S    +SN+E VSS  D+LT++ + ES+ALV +P M++E LAVVPVNQK ++SEL QRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  410 VMEAVNSILRGGLSVGVLVHGKKVRDDNRTLLQTGISCKDNLDSLGFTLEPSLVQAPPSLCSGDPPPSL------SCETSVLLTRSPGTPVLDSVMSDPLSEPPPLTHSGSLPESNHELVSSHIDILTNKTMLESQALVAIPEMSMEPLAVVPVNQKTKRSELVQRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 629

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: B9HTH4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20990g PE=4 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 5.293e-68
Identity = 147/222 (66.22%), Postives = 177/222 (79.73%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAV+A+LGG +RVGVLL GKKVRDD+RTLLQTGI+S +NLD LGF+LEP PV    P+C+E+P   LP  ++   L S    TP +D+G+S A PDPP LTN    ++SN E VSS  D++TD  L +SRALV VP +N E LA+VP+NQK ++SEL QRRTRRPFSVSEVEALV AVEELGTGRWRDVKL +FE+ADHRTYVDLKDKWKTLVHTA+I+P
Sbjct:  420 VVEAVSAILGGGLRVGVLLHGKKVRDDNRTLLQTGITSNENLDTLGFSLEPTPVQVSPPLCTEDPAALLPCDTSQLILRSP--TTPIVDSGVSDALPDPPPLTNLDTNIESNRESVSSHADIVTDNTLPDSRALVAVPPVNAEELAMVPLNQKSKRSELVQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLVHTAQIAP 639

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: U5FZE2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20990g PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.653e-68
Identity = 147/222 (66.22%), Postives = 177/222 (79.73%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAV+A+LGG +RVGVLL GKKVRDD+RTLLQTGI+S +NLD LGF+LEP PV    P+C+E+P   LP  ++   L S    TP +D+G+S A PDPP LTN    ++SN E VSS  D++TD  L +SRALV VP +N E LA+VP+NQK ++SEL QRRTRRPFSVSEVEALV AVEELGTGRWRDVKL +FE+ADHRTYVDLKDKWKTLVHTA+I+P
Sbjct:  431 VVEAVSAILGGGLRVGVLLHGKKVRDDNRTLLQTGITSNENLDTLGFSLEPTPVQVSPPLCTEDPAALLPCDTSQLILRSP--TTPIVDSGVSDALPDPPPLTNLDTNIESNRESVSSHADIVTDNTLPDSRALVAVPPVNAEELAMVPLNQKSKRSELVQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLVHTAQIAP 650

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Match: U5G2A0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20990g PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 6.482e-68
Identity = 147/222 (66.22%), Postives = 177/222 (79.73%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAV+A+LGG +RVGVLL GKKVRDD+RTLLQTGI+S +NLD LGF+LEP PV    P+C+E+P   LP  ++   L S    TP +D+G+S A PDPP LTN    ++SN E VSS  D++TD  L +SRALV VP +N E LA+VP+NQK ++SEL QRRTRRPFSVSEVEALV AVEELGTGRWRDVKL +FE+ADHRTYVDLKDKWKTLVHTA+I+P
Sbjct:  429 VVEAVSAILGGGLRVGVLLHGKKVRDDNRTLLQTGITSNENLDTLGFSLEPTPVQVSPPLCTEDPAALLPCDTSQLILRSP--TTPIVDSGVSDALPDPPPLTNLDTNIESNRESVSSHADIVTDNTLPDSRALVAVPPVNAEELAMVPLNQKSKRSELVQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLVHTAQIAP 648

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.311e-63
Identity = 139/222 (62.61%), Postives = 169/222 (76.13%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL G IRVGVL+ GKKVRD+ +TL QTGIS ++NLD LGFTLEP P   P P+CSE+P +     + P +L+     +P LD+GI    P    + +S   VDSN E V  Q D+  D+  S+S+ LVP+P + V+ALA+VP+NQK +++ELAQRRTRRPFSV+EVEALVQAVEELGTGRWRDVKLRAFE+ADHRTYVDLKDKWKTLVHTA ISP
Sbjct:  353 VMEAVSVLLSGGIRVGVLMHGKKVRDERKTLSQTGISCDENLDNLGFTLEPSPSKVPLPLCSEDPAVP----TDPTSLSERSAASPMLDSGI----PHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQKPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISP 566

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.053e-60
Identity = 140/223 (62.78%), Postives = 166/223 (74.44%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQN-LSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V EAVTALLGG IR+GVL+QGKKVRDD+ TL QTG+S  +NL  LGFTLEPG    P P+CSE P L LP  S    L+     +PAL+TGI     D   L N    V++N E V   +D+  D+   S+SRALVPV A+  +ALA+VPVN+K +++EL+QRRTRRPFSV+EVEALV AVEE+GTGRWRDVKLR+FENA HRTYVDLKDKWKTLVHTA ISP
Sbjct:  372 VKEAVTALLGGGIRIGVLVQGKKVRDDNNTLSQTGLSCRENLGNLGFTLEPGLETLPVPLCSETPVLSLPTDST--KLSERSAASPALETGIPLPPQDEDYLINLGNSVENNDELVPHLSDIPADEQPSSDSRALVPVLALESDALALVPVNEKPKRTELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISP 592

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.562e-42
Identity = 119/222 (53.60%), Postives = 147/222 (66.22%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V+EAVT++LGG +R+GVL+ GKKVRDDS+ LLQTG+S +   D LGF LEP P  + +P+  E+     P  + P  LT  L              P P      AKP +S    + S+           SRAL+PV  ++ +AL VVP  +K ++SE+AQRR RRPFSV+EVEALVQAVE LGTGRWRDVKLRAF+NA HRTYVDLKDKWKTLVHTA+ISP
Sbjct:  383 VLEAVTSILGGGLRIGVLVHGKKVRDDSKMLLQTGLSLDTLSDTLGFCLEPNPPQSTKPLSPEDSDFARP-CNVPHTLTRCL--------------PSP---GKHAKPSNSVESDLDSKPSAPNRGKTIYSRALIPVSPLHAQALTVVPP-RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISP 585

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.315e-40
Identity = 122/227 (53.74%), Postives = 151/227 (66.52%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDN-LDALGFTLEPGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSE---LAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAVT +LG  +RVG+++QGKKVRDD +TLLQTGIS E+N LD+LGF+LEP     P+P                  L SS +   A D        D  L  ++A  +DS++E   S  D       S+ SRAL+PV +  +  LA  P N+K +++E    AQRR RRPFSV+EVEALVQAVE+LGTGRWRDVK+RAFE+ADHRTYVDLKDKWKTLVHTA+ISP
Sbjct:  314 VMEAVTTILGDGLRVGLMVQGKKVRDDGKTLLQTGISEENNHLDSLGFSLEPSLETTPQP------------------LLSSYLSDHACD--------DVTLCHDNA--LDSSHEPEPSPADSFGKLGTSDHSRALIPVASAAM--LAPRPPNRKFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISP 510

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.250e-28
Identity = 96/224 (42.86%), Postives = 130/224 (58.04%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSEDNLDALGFTLE--PGPVIAPRPICSEEPPLQLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSESRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            V +AVT ++   +RVG+LLQGK +++D++TL Q GI     L+ +GFTLE   G    P  I  EE            +   + VV  +          +  L+ +      S+   V    +  T +  + S+A+VP    N  ALA VP+++  ++ +  QRR RRPF+V+EVE LV+AVE LGTGRWRDVK RAFEN  HRTYVDLKDKWKTLVHTA I+P
Sbjct:  380 VSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEE-----------MDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRS-KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 591

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP1_ARATH (Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.009e-27
Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 2

Query:    2 VMEAVTAXXXXXXXXXXXXXXKKVRDDSRTLLQTGISSED-NLDALGFTLEPGPVIAPRPICSEEPPL--QLPRGSAPQNLTSSLVVTPALDTGISAATPDPPLLTNSAKPVDSNYEHVSSQTDMLTDQNLSE-SRALVPVPAMNVEALAVVPVNQKIRKSELAQRRTRR-----PFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISP 667
            VMEAV+ LL    RVG+++QGKKVRDD++TL QTGIS ++ +LD+L F+LEP          SE P L    P G A + L      T  +D  + +   D  L      P DS           L + N++E S+A++ V A+N  +    P ++K R+SE  Q++  +     PFSV+EVEALVQAVE+LGTGRWRDVKL AFE+ADHRTYVDLKDKWKTLVHTAKISP
Sbjct:  322 VMEAVSTLLSDGHRVGLMVQGKKVRDDNKTLHQTGISQDNSHLDSLDFSLEPS---------SEMPQLLTSHPLGHACEELLPVCQATK-IDNVLESDHHDSALF-----PSDS-----------LGNNNVTEDSKAMISV-ALNELSSQSQPPSRKSRRSEQQQQQAAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 525

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BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Match: TRP6_ARATH (Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.582e-20
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2

Query:  425 VEALAVVPVNQK-IRKSELAQRRTRRPFXXXXXXXXXXXXXXXGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKIS 664
            V A +VVPV  K   + E+ QRR RRPF+VSEVEALVQAVE LGTGRWRDVK  AF + +HRTYVDLKDKWKTLVHTAKIS
Sbjct:  291 VAAKSVVPVRMKPAWQPEMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKIS 371

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4T6G5_9ROSI	1.195e-74	70.72	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4TGG3_9ROSI	1.338e-74	70.72	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A0D2UFW3_GOSRA	1.065e-73	73.89	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067LKS0_JATCU	1.644e-72	69.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9HMJ1_POPTR	3.308e-71	67.57	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
U5FZ61_POPTR	3.721e-68	66.22	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
M5XT46_PRUPE	4.204e-68	66.37	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9HTH4_POPTR	5.293e-68	66.22	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
U5FZE2_POPTR	5.653e-68	66.22	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
U5G2A0_POPTR	6.482e-68	66.22	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0005544 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
TRP3_ARATH	3.311e-63	62.61	Telomere repeat-binding protein 3 OS=Arabidopsis t...	[more]
TRP4_ARATH	1.053e-60	62.78	Telomere repeat-binding protein 4 OS=Arabidopsis t...	[more]
TRP5_ARATH	1.562e-42	53.60	Telomere repeat-binding protein 5 OS=Arabidopsis t...	[more]
TRP2_ARATH	2.315e-40	53.74	Telomere repeat-binding protein 2 OS=Arabidopsis t...	[more]
TBP1_ORYSJ	2.250e-28	42.86	Telomere-binding protein 1 OS=Oryza sativa subsp. ...	[more]
TRP1_ARATH	6.009e-27	48.92	Telomere repeat-binding protein 1 OS=Arabidopsis t...	[more]
TRP6_ARATH	1.582e-20	74.07	Telomere repeat-binding protein 6 OS=Arabidopsis t...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 163..216 e-value: 1.6E-7 score: 41.0
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 164..213 e-value: 1.5E-5 score: 24.9
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 164..214 e-value: 2.0E-10 score: 40.0
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 161..215
None	No IPR available	PANTHER	PTHR21717:SF9	PROTEIN TBF1	coord: 1..221
None	No IPR available	PANTHER	PTHR21717	TELOMERIC REPEAT BINDING PROTEIN	coord: 1..221
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 159..218 score: 16.376

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0005544 ID=g.arboreum_cottongen_reftransV1_0005544; Name=g.arboreum_cottongen_reftransV1_0005544; organism=Gossypium arboreum; type=contig; length=667bp
TGTAATGGAGGCGGTGACTGCCTTACTTGGAGGTAGAATCCGTGTTGGGG
TACTCCTTCAAGGGAAGAAAGTGAGAGATGACAGTCGAACTCTATTACAA
ACCGGTATTTCATCTGAAGACAATTTGGATGCTCTGGGTTTCACTTTGGA
GCCTGGTCCCGTGATAGCTCCTCGACCTATATGCTCCGAAGAACCCCCTC
TACAGTTGCCACGTGGCTCTGCCCCTCAAAATTTAACAAGCTCTTTAGTA
GTCACACCAGCCTTAGATACGGGGATTTCAGCTGCCACACCTGACCCACC
TTTACTGACCAATTCAGCAAAACCTGTGGATAGTAATTATGAACACGTTT
CCTCCCAAACTGACATGCTAACCGATCAAAATCTGTCAGAGTCTAGAGCT
CTGGTTCCAGTTCCAGCGATGAATGTCGAGGCACTAGCTGTTGTCCCTGT
CAACCAGAAAATTCGGAAATCTGAGCTTGCACAGCGTAGAACCAGGAGGC
CATTTTCCGTGTCAGAAGTAGAAGCATTGGTACAGGCTGTTGAGGAGCTC
GGAACCGGAAGGTGGCGGGATGTTAAATTGCGAGCTTTTGAGAATGCTGA
CCATCGAACTTATGTGGATCTGAAGGATAAATGGAAAACATTGGTTCACA
CAGCAAAAATTTCGCCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Search form

g.arboreum_cottongen_reftransV1_0005544, g.arboreum_cottongen_reftransV1_0005544 (contig) Gossypium arboreum

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