g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4UBJ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014876mg PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.532e-45 Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = -2 Query: 63 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLR 383 PG EPTVSTYEI+VRMFC +VD+A ++WD+MK +GVLP MHMYS LI SLCH+DKL +ACKYFQEMLD GIRPP ++FSNLKQAL DEG ++ A+ L +KI+KLR Sbjct: 422 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 528
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4MAA0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018364mg PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.749e-45 Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+M+ KGVLPGMHM+S LIT++CH++KL EAC+YF EMLD GI+ P MFS LKQALLDEG+KD+ ++L K+++LR T L+ Sbjct: 437 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMRGKGVLPGMHMFSSLITAMCHENKLDEACEYFNEMLDVGIKAPGHMFSRLKQALLDEGRKDKVVDLAVKMDRLRKTQLL 547
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: I3T018_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 5.444e-45 Identity = 65/111 (58.56%), Postives = 91/111 (81.98%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEP+VSTY I+VRMFCNE+++D+A VW++MK KG+LPG+HM+S LI SLCH++KL +AC+YFQ+MLD GIRP A MFS K+AL+ G ++ ++ +K++KLR TPL+ Sbjct: 86 GCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDKLRNTPLI 196
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: M4CUR4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra007959 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 6.276e-45 Identity = 72/111 (64.86%), Postives = 93/111 (83.78%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P MFS LKQALLDEG+KD+ L K+++LR T L+ Sbjct: 395 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCNENKLDEACEYFSEMLDVGIKAPGHMFSRLKQALLDEGRKDKVAELAVKMDRLRKTQLL 505
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A078ESU3_BRANA (BnaA02g15330D protein OS=Brassica napus GN=BnaA02g15330D PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.349e-44 Identity = 71/111 (63.96%), Postives = 92/111 (82.88%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P MF LKQALLDEG+KD+ L K+++LR T L+ Sbjct: 395 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCNENKLDEACEYFSEMLDVGIKAPGHMFGRLKQALLDEGRKDKVAELAVKMDRLRKTQLL 505
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.341e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 470 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 542
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.375e-10 Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = -2 Query: 75 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 377 C P TY ++ C E++V+ A ++ + KG+LP + ++ LI LC A + F+EM G P ++ L +L +GK DEALN+ +++ Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461 HSP 2 Score: 55.4546 bits (132), Expect = 2.687e-8 Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = -2 Query: 156 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 380 GCEP + TY ++ C RV++A ++ +++KG+ H Y+ +I L K K EA F+EML+ PP Sbjct: 570 GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644 HSP 3 Score: 51.2174 bits (121), Expect = 6.596e-7 Identity = 31/111 (27.93%), Postives = 48/111 (43.24%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 G TY ++ C RV+ A Q+ DQM ++G P + Y+ L+T C + +A Q M G P + L L G+ + A L R I +++G L Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI-QMKGINLT 609 HSP 4 Score: 50.8322 bits (120), Expect = 9.014e-7 Identity = 23/82 (28.05%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 135 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNL 380 GC +V TY ++ FC ++ A++++D+M+V GV Y+ LI LC ++ +A + +M+ G +P +++L Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.427e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 469 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.546e-10 Identity = 31/93 (33.33%), Postives = 45/93 (48.39%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 +P V TY ++ C RVD AKQ+ D M KG LP + Y+ LI C ++ E K F+EM G+ ++ + Q G+ D A Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.549e-10 Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = -2 Query: 60 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRG 383 G EP + T+ ++ +CN + A ++ +M +KG++P + Y+ LI + + + EA + + +ML+AGI P F+ L EG+ A++ ++ N+ R Sbjct: 438 SGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS 545 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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