g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018368
Unique Nameg.arboreum_cottongen_reftransV1_0018368
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0018368:1..384 .
Chr5:31147641..31148024 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4UBJ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014876mg PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.532e-45
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = -2
Query:   63 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLR 383
            PG EPTVSTYEI+VRMFC   +VD+A ++WD+MK +GVLP MHMYS LI SLCH+DKL +ACKYFQEMLD GIRPP ++FSNLKQAL DEG ++ A+ L +KI+KLR
Sbjct:  422 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 528          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4MAA0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018364mg PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.749e-45
Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = -2
Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+M+ KGVLPGMHM+S LIT++CH++KL EAC+YF EMLD GI+ P  MFS LKQALLDEG+KD+ ++L  K+++LR T L+
Sbjct:  437 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMRGKGVLPGMHMFSSLITAMCHENKLDEACEYFNEMLDVGIKAPGHMFSRLKQALLDEGRKDKVVDLAVKMDRLRKTQLL 547          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: I3T018_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.444e-45
Identity = 65/111 (58.56%), Postives = 91/111 (81.98%), Query Frame = -2
Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
            GCEP+VSTY I+VRMFCNE+++D+A  VW++MK KG+LPG+HM+S LI SLCH++KL +AC+YFQ+MLD GIRP A MFS  K+AL+  G ++  ++  +K++KLR TPL+
Sbjct:   86 GCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDKLRNTPLI 196          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: M4CUR4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra007959 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.276e-45
Identity = 72/111 (64.86%), Postives = 93/111 (83.78%), Query Frame = -2
Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P  MFS LKQALLDEG+KD+   L  K+++LR T L+
Sbjct:  395 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCNENKLDEACEYFSEMLDVGIKAPGHMFSRLKQALLDEGRKDKVAELAVKMDRLRKTQLL 505          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A078ESU3_BRANA (BnaA02g15330D protein OS=Brassica napus GN=BnaA02g15330D PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.349e-44
Identity = 71/111 (63.96%), Postives = 92/111 (82.88%), Query Frame = -2
Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P  MF  LKQALLDEG+KD+   L  K+++LR T L+
Sbjct:  395 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCNENKLDEACEYFSEMLDVGIKAPGHMFGRLKQALLDEGRKDKVAELAVKMDRLRKTQLL 505          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.341e-10
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2
Query:  156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374
            EP++ T+ +I++ +      ++ + VWD+M  KG+ P  + Y+ LI  L  + K  EAC+Y +EMLD G++ P
Sbjct:  470 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 542          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.375e-10
Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = -2
Query:   75 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 377
            C P   TY  ++   C E++V+ A ++   +  KG+LP +  ++ LI  LC       A + F+EM   G  P    ++ L  +L  +GK DEALN+ +++
Sbjct:  361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461          

HSP 2 Score: 55.4546 bits (132), Expect = 2.687e-8
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = -2
Query:  156 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 380
            GCEP + TY  ++   C   RV++A ++   +++KG+    H Y+ +I  L  K K  EA   F+EML+    PP
Sbjct:  570 GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644          

HSP 3 Score: 51.2174 bits (121), Expect = 6.596e-7
Identity = 31/111 (27.93%), Postives = 48/111 (43.24%), Query Frame = -2
Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
            G      TY  ++   C   RV+ A Q+ DQM ++G  P  + Y+ L+T  C    + +A    Q M   G  P    +  L   L   G+ + A  L R I +++G  L 
Sbjct:  500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI-QMKGINLT 609          

HSP 4 Score: 50.8322 bits (120), Expect = 9.014e-7
Identity = 23/82 (28.05%), Postives = 45/82 (54.88%), Query Frame = -2
Query:  135 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNL 380
            GC  +V TY  ++  FC  ++   A++++D+M+V GV      Y+ LI  LC   ++ +A +   +M+  G +P    +++L
Sbjct:  465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.427e-10
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2
Query:  156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374
            EP++ T+ +I++ +      ++ + VWD+M  KG+ P  + Y+ LI  L  + K  EAC+Y +EMLD G++ P
Sbjct:  469 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.546e-10
Identity = 31/93 (33.33%), Postives = 45/93 (48.39%), Query Frame = -2
Query:   96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374
            +P V TY  ++   C   RVD AKQ+ D M  KG LP +  Y+ LI   C   ++ E  K F+EM   G+      ++ + Q     G+ D A
Sbjct:  276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368          
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.549e-10
Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = -2
Query:   60 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRG 383
             G EP + T+  ++  +CN   +  A  ++ +M +KG++P +  Y+ LI +   +  + EA + + +ML+AGI P    F+ L      EG+   A++  ++ N+ R 
Sbjct:  438 SGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS 545          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4UBJ7_9ROSI1.532e-4569.16Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4MAA0_EUTSA1.749e-4563.96Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
I3T018_MEDTR5.444e-4558.56Uncharacterized protein OS=Medicago truncatula PE=... [more]
M4CUR4_BRARP6.276e-4564.86Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A078ESU3_BRANA3.349e-4463.96BnaA02g15330D protein OS=Brassica napus GN=BnaA02g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PP294_ARATH2.341e-1035.62Pentatricopeptide repeat-containing protein At3g62... [more]
PP281_ARATH2.375e-1030.69Pentatricopeptide repeat-containing protein At3g53... [more]
PP382_ARATH2.427e-1035.62Pentatricopeptide repeat-containing protein At5g14... [more]
PPR93_ARATH2.546e-1033.33Pentatricopeptide repeat-containing protein At1g62... [more]
PP440_ARATH2.549e-1026.85Pentatricopeptide repeat-containing protein At5g61... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 29..60
e-value: 9.8E-7
score: 26.6
coord: 2..25
e-value: 2.5E-4
score: 19.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 2..23
e-value: 0.076
score: 13.2
coord: 29..58
e-value: 2.4E-5
score: 24.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..25
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 26..60
score: 10.402
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 61..95
score: 5.963
NoneNo IPR availablePANTHERPTHR24015:SF261SUBFAMILY NOT NAMEDcoord: 1..100
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..100

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bp
GGGCACCAGCATACAGCTCACATTCTTTCTCACTTCTGGTCTCGAACAAC
TAACGGAGTTCCCCTCAGCTTATTGATTTTCCGAGTCAAATTTAAAGCTT
CATCCTTCTTCCCCTCATCAAGTAGAGCCTGTTTCAGATTACTAAACATC
TTGGCCGGAGGTCGAATACCTGCATCCAACATTTCCTGAAAATATTTGCA
AGCTTCACCTAACTTGTCCTTGTGACACAAACTGGTAATTAAATCAGAGT
ACATATGCATCCCTGGAAGCACTCCCTTGACCTTCATCTGATCCCAAACC
TGCTTTGCCAAATCCACTCGATCCTCGTTGCAGAACATCCTTACTATAAT
TTCGTAAGTACTCACAGTTGGCTCACAGCCCGGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt