g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A068U7T5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018565001 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.603e-49 Identity = 77/112 (68.75%), Postives = 93/112 (83.04%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPT+STYEI+VRMFCNE+R D+A +VW+QMK KG LPGMHM+S LI SL H++KL +AC+YFQ+MLD GIRPP MF NLKQALLDEGK+D L L +K+ KLR T +V Sbjct: 405 PGCEPTISTYEIMVRMFCNEERTDMALRVWNQMKAKGFLPGMHMFSSLINSLSHENKLEDACRYFQQMLDMGIRPPTPMFKNLKQALLDEGKEDTVLTLAKKLEKLRVTQIV 516
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: R0GFP7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022011mg PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.233e-48 Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTV TYEI+VRMFCNE+R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP +MFS LKQ LLDEG+KD+ + L K+++LR T LV Sbjct: 401 SCEPTVGTYEIMVRMFCNEERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGQMFSRLKQTLLDEGRKDKVVELAVKMDRLRKTQLV 511
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: K7LLK9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.094e-47 Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = -2 Query: 45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380 GCEP+VSTYEI+VRMFCNE+ +D+A VWD+MK KG+LPGMHM+S L+ +LCH+ KL EACKYFQEMLD GIRPPAKMFS LK+AL+D G + A++ T KI+KLR +PLV Sbjct: 396 GCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHFTLKIDKLRKSPLVA 507
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: D7KYI3_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476238 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 3.475e-47 Identity = 74/111 (66.67%), Postives = 94/111 (84.68%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP +FS LKQ LLDEG+KD+ +L K+++LR T LV Sbjct: 401 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDRLRKTQLV 511
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V7BAW1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G037500g PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.688e-47 Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEP+VSTYEI+VRMFCNE R+D+A VWD+MK KG+LPG+HM+S LI SLCH++KL EACKYFQEMLD GIRPPAKMFS LK+AL+D + A++ KI+KLR +PLV Sbjct: 412 GCEPSVSTYEIMVRMFCNEVRLDMAMAVWDEMKEKGILPGVHMFSTLICSLCHENKLNEACKYFQEMLDVGIRPPAKMFSTLKEALVDARMEHVAMHFAMKIDKLRKSPLV 522
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4NJL2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000687mg PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.308e-46 Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+M+ KGVLPGMHM+S LIT++CH++KL EAC+YF EMLD GI+ P MFS LKQALLDEG+KD+ ++L K+++LR T L+ Sbjct: 196 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMRGKGVLPGMHMFSSLITAMCHENKLDEACEYFNEMLDVGIKAPGHMFSCLKQALLDEGRKDKVVDLAVKMDRLRKTQLL 306
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: K4BX07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g008330.1 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.846e-46 Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPTVSTYEI+VRMFCNE+R D+A +VWD+MK GVLPGMH +S LI S C + KL +AC+YFQEMLD G+RPP +F NLK+ALLDEGK+D L RK+ KLR +PLV Sbjct: 409 PGCEPTVSTYEIMVRMFCNEERTDMALKVWDKMKANGVLPGMHSFSTLINSFCRESKLDDACRYFQEMLDMGMRPPIPLFDNLKRALLDEGKEDIVKALWRKLEKLRKSPLV 520
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: B9SYJ4_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1288600 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.210e-46 Identity = 76/110 (69.09%), Postives = 93/110 (84.55%), Query Frame = -2 Query: 48 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 377 CEPTVSTY+IIVRMFCN D+V+ A +VWD+MK KGV PGMHM+S LI SLCH++KL ACKYFQEMLD GIRPPA +FS+LKQAL+++G+KD + L +KI+KLR TP V Sbjct: 423 CEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDKLRKTPYV 532
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: M1D082_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030554 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.337e-46 Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPTVSTYEI+VRMFCNEDR D+A +VWD+MK GVLPGMH +S LI S C ++KL +AC+YFQEMLD G+RPP +F NLK+ALLDEGK+D L RK+ KLR + LV Sbjct: 419 PGCEPTVSTYEIMVRMFCNEDRTDMALRVWDKMKANGVLPGMHSFSTLINSFCRENKLDDACRYFQEMLDMGMRPPIPLFDNLKRALLDEGKEDTVKALWRKLEKLRKSSLV 530
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A087HHC8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G141500 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 4.927e-46 Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN +R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P +MFS LKQALLDEG+KD+ ++L K++KLR T LV Sbjct: 404 SCEPTVSTYEIMVRMFCNIERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCYENKLDEACEYFSEMLDVGIKAPGQMFSRLKQALLDEGRKDKVVDLAVKMDKLRKTQLV 514
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.341e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 470 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 542
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.375e-10 Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = -2 Query: 75 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 377 C P TY ++ C E++V+ A ++ + KG+LP + ++ LI LC A + F+EM G P ++ L +L +GK DEALN+ +++ Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461 HSP 2 Score: 55.4546 bits (132), Expect = 2.687e-8 Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = -2 Query: 156 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 380 GCEP + TY ++ C RV++A ++ +++KG+ H Y+ +I L K K EA F+EML+ PP Sbjct: 570 GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644 HSP 3 Score: 51.2174 bits (121), Expect = 6.596e-7 Identity = 31/111 (27.93%), Postives = 48/111 (43.24%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 G TY ++ C RV+ A Q+ DQM ++G P + Y+ L+T C + +A Q M G P + L L G+ + A L R I +++G L Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI-QMKGINLT 609 HSP 4 Score: 50.8322 bits (120), Expect = 9.014e-7 Identity = 23/82 (28.05%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 135 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNL 380 GC +V TY ++ FC ++ A++++D+M+V GV Y+ LI LC ++ +A + +M+ G +P +++L Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.427e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 469 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.546e-10 Identity = 31/93 (33.33%), Postives = 45/93 (48.39%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 +P V TY ++ C RVD AKQ+ D M KG LP + Y+ LI C ++ E K F+EM G+ ++ + Q G+ D A Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.549e-10 Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = -2 Query: 60 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRG 383 G EP + T+ ++ +CN + A ++ +M +KG++P + Y+ LI + + + EA + + +ML+AGI P F+ L EG+ A++ ++ N+ R Sbjct: 438 SGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS 545 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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