g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A0D2NDT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162800 PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 2.611e-74 Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -2 Query: 33 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQK 383 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMK KGVLPGMHMYSDLITSLCHK+KLGEACKYFQEMLDAGIRPPAKMFSNLKQALL EGKKDEALNL RKINKLRGTPLVVRDQK Sbjct: 474 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLGEGKKDEALNLARKINKLRGTPLVVRDQK 590 HSP 2 Score: 60.077 bits (144), Expect = 5.914e-8 Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G EP V TY I++ +C + D A +++ +M+ K P H+Y LI L + +L EA ++F+ G P A +++L A + D+A + ++ K P Sbjct: 334 GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGP 442
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: D2STE8_GOSHI (Pentatricopeptide repeat protein OS=Gossypium hirsutum GN=PPR3 PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 5.101e-74 Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = -2 Query: 33 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQK 383 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMK KGVLPGMHMYSDLITSLCHK+KLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGK DEALNL RKINKLRGTPLVV DQK Sbjct: 431 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLARKINKLRGTPLVVGDQK 547 HSP 2 Score: 60.8474 bits (146), Expect = 3.176e-8 Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G EP V TY I++ +C + D A +++ +M+ K P H+Y LI L + +L EA ++F+ G P A +++L A + D+A + ++ K P Sbjct: 291 GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGP 399
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A061E7F9_THECC (Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010824 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.118e-57 Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = -2 Query: 36 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQ 383 PGC PTVSTYEIIVRMFCNE++VD+A VW QMK +GVLPGMHM+SDLI SLCH KL +ACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKD ALNL RKI+KLR PLV Q Sbjct: 430 PGCVPTVSTYEIIVRMFCNEEQVDMAMLVWAQMKAEGVLPGMHMFSDLINSLCHNSKLDDACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDTALNLARKIDKLRKMPLVGEGQ 545
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A059BEG7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02199 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.274e-53 Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPT+STYEIIVRMFCNEDR D+A +VW QMK KGVLPGMHM+S +I+SLCH++KL +ACKYFQEM+D GIRPPA FS LKQ LLDEG+KD+ LN +RKI+KLR PLV Sbjct: 404 PGCEPTLSTYEIIVRMFCNEDRTDMALRVWKQMKEKGVLPGMHMFSTVISSLCHENKLDDACKYFQEMMDVGIRPPANTFSKLKQCLLDEGRKDDVLNFSRKIDKLRKAPLV 515
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: B9HW85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12490g PE=4 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 1.698e-52 Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEP+VSTYEIIVRMFCNEDRVD+A +VWDQMK KG+LP MHM+S LI SLCH+ KL EAC YFQEMLD GIRPPA++FSNLKQ LLDEGKKD + RK++KLR PLV Sbjct: 377 GCEPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKAPLV 487
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A0A0KUY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571490 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 2.221e-52 Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPT+STY+I++RMFCNE+RVD+A Q+WD+MK KGVLPGMH++S LI SLCH+ KL +AC YFQEMLD GIRPPA MFSNLKQALLD+G+KD AL + KI KLR PLV Sbjct: 430 PGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPLV 541
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: F6HFJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04690 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 4.277e-51 Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEP+VSTYEI+VRMFCNE+RVD+A +VWD+MK KGVLPGMHM+S LI SLC+++KL EACKYF EMLD GIRPPA MFSNLKQ LLDEGK+D L L +K++K+R T ++ Sbjct: 419 PGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTTQVI 530
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A067KPG2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04675 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 2.284e-50 Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEPTVSTYEIIVRMFCN +RVD A Q+WDQMK KG+LPGMHM+ +I SLCH++KL ACKYFQEMLD GIRPPA +FSNLKQALLD GKK + L +KI+KLR TP V Sbjct: 378 GCEPTVSTYEIIVRMFCNAERVDKAIQIWDQMKAKGILPGMHMFCTIINSLCHENKLDMACKYFQEMLDVGIRPPATLFSNLKQALLDNGKKHIVVLLAQKIDKLRKTPFV 488
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: W9RD71_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025886 PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.553e-50 Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPTVSTYEI+VRMFCN +R+D+A Q+WDQMK KGVLPGMHM+S LI SLC +DKL +ACKYFQEM+D GIRPPA+++SNLKQALLDEG++D L +I KLR T LV Sbjct: 439 PGCEPTVSTYEIMVRMFCNVERLDMAIQIWDQMKAKGVLPGMHMFSTLINSLCMEDKLDDACKYFQEMMDMGIRPPAQLYSNLKQALLDEGREDMVQTLYERIEKLRKTSLV 550
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A067FBH5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037620mg PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 6.632e-50 Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = -2 Query: 36 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQ 383 PG EPTVSTYEI+VRMFC +VD+A ++WD+MK +GVLP MHMYS LI SLCH+DKL +ACKYFQEMLD GIRPP ++FSNLKQAL DEG ++ A+ L +KI+KLR TPLV R Q Sbjct: 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLVDRGQ 330
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.341e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 470 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 542
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.375e-10 Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = -2 Query: 75 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 377 C P TY ++ C E++V+ A ++ + KG+LP + ++ LI LC A + F+EM G P ++ L +L +GK DEALN+ +++ Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461 HSP 2 Score: 55.4546 bits (132), Expect = 2.687e-8 Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = -2 Query: 156 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 380 GCEP + TY ++ C RV++A ++ +++KG+ H Y+ +I L K K EA F+EML+ PP Sbjct: 570 GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644 HSP 3 Score: 51.2174 bits (121), Expect = 6.596e-7 Identity = 31/111 (27.93%), Postives = 48/111 (43.24%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 G TY ++ C RV+ A Q+ DQM ++G P + Y+ L+T C + +A Q M G P + L L G+ + A L R I +++G L Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI-QMKGINLT 609 HSP 4 Score: 50.8322 bits (120), Expect = 9.014e-7 Identity = 23/82 (28.05%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 135 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNL 380 GC +V TY ++ FC ++ A++++D+M+V GV Y+ LI LC ++ +A + +M+ G +P +++L Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.427e-10 Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = -2 Query: 156 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPP 374 EP++ T+ +I++ + ++ + VWD+M KG+ P + Y+ LI L + K EAC+Y +EMLD G++ P Sbjct: 469 EPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.546e-10 Identity = 31/93 (33.33%), Postives = 45/93 (48.39%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 +P V TY ++ C RVD AKQ+ D M KG LP + Y+ LI C ++ E K F+EM G+ ++ + Q G+ D A Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.549e-10 Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = -2 Query: 60 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRG 383 G EP + T+ ++ +CN + A ++ +M +KG++P + Y+ LI + + + EA + + +ML+AGI P F+ L EG+ A++ ++ N+ R Sbjct: 438 SGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS 545 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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