g.arboreum_cottongen_reftransV1_0020660, g.arboreum_cottongen_reftransV1_0020660 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2S104_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G109000 PE=4 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 1.635e-105 Identity = 188/280 (67.14%), Postives = 209/280 (74.64%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ----QQNHVVQNRGR---YANRTLGLAPSAWPPL 857 MA+VLDD EF LP QFLTDDD D K ++ + GFGLEL G+KSLFP+E P GFGSLG S D SPVESV+GSTETESDE DYLAGLTRQMAH TLED RRNDR+F++EN KG V+SSSPQSTLC SGC C QGSSR SP CQSRV PPGTWDLLYAAA EV R+RM+EE YGG +NRGLLG ARK SPN DV+GFY QS +H KL+T Q LKQQQLMKQQNA W G KQQ NHVVQ+R R +NR +GL+ SAWPPL Sbjct: 1 MAQVLDDAEFCLPPQFLTDDDLVMDNSKAKSNPKYVDGGFGLELGGSKSLFPYEFPYGFGSLGFSSDPSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGIRRNDRAFSSENPKGRVMSSSPQSTLCVSRSGCSCMQGSSRGSPTCQSRVPPPPGTWDLLYAAAEEVARMRMSEESYGGLNNRGLLGSSARKFSPNADVTGFYLPTQSHAHQKLQTA--QMLKQQQLMKQQNASVWAGQKQQLHSHHHNHVVQSRVRSNNSSNRPMGLSQSAWPPL 278
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2V416_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G109000 PE=4 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 2.960e-96 Identity = 153/222 (68.92%), Postives = 170/222 (76.58%), Query Frame = -1 Query: 198 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTH 857 MA+VLDD EF LP QFLTDDD D K ++ + GFGLEL G+KSLFP+E P GFGSLG S D SPVESV+GSTETESDE DYLAGLTRQMAH TLED RRNDR+F++EN KG V+SSSPQSTLC SGC C QGSSR SP CQSRV PPGTWDLLYAAA EV R+RM+EE YGG +NRGLLG ARK SPN DV+GFY QS +H KL+T Sbjct: 1 MAQVLDDAEFCLPPQFLTDDDLVMDNSKAKSNPKYVDGGFGLELGGSKSLFPYEFPYGFGSLGFSSDPSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGIRRNDRAFSSENPKGRVMSSSPQSTLCVSRSGCSCMQGSSRGSPTCQSRVPPPPGTWDLLYAAAEEVARMRMSEESYGGLNNRGLLGSSARKFSPNADVTGFYLPTQSHAHQKLQTAQ 222
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A067ES80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012540mg PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 6.472e-82 Identity = 174/310 (56.13%), Postives = 205/310 (66.13%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-----SLKDGFGLELDGNKSLFPFEIPGGFGSLGLSP-DLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSP-----------NLDVS-GFYTQQS--LSHNKLRTTHFXXXXXXXXXXXQN-------ALAWGGLKQQQQ---NHVVQ----NRGRYAN----RTLGLAPSAWPPL 857 MA+ LDDGEFWLP QFLTDDD D + TN++N + K+GF LE D KSLFPFE P GFG+ G S DL SPVESV+GSTETESDE DY+AGLTRQ+AH TLEDD+ FAA+ TK +S SPQSTLC + GCGC+QGSSR SP CQS+VSSPP TWDLLYAAAGEV R+RMNEE YG + G L P RKPSP + D + G Y++Q LSH +L+ T FQQLKQQQ +QQ + WGG +QQ Q N + Q NR +N R+LGL+PSAWPPL Sbjct: 1 MAQSLDDGEFWLPPQFLTDDDILMD-LSMTNNSNIKKSSNNKEGFDLEADATKSLFPFEFPYGFGAFGHSSSDLSSPVESVVGSTETESDEEDYIAGLTRQIAHSTLEDDA------FAADKTKARFVSGSPQSTLCTVGRGCGCRQGSSRGSPGCQSQVSSPPETWDLLYAAAGEVARMRMNEESYGYHQHNGGLLCPPRKPSPISVPLKNHHPNHFDAAGGIYSRQHQLLSHQRLQATQFQQLKQQQQQQQQQMMKQQQGSSVWGGPQQQTQSKPNGLYQVGGMNRLTRSNSNNGRSLGLSPSAWPPL 303
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A067F3B4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012540mg PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 1.322e-81 Identity = 174/310 (56.13%), Postives = 205/310 (66.13%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-----SLKDGFGLELDGNKSLFPFEIPGGFGSLGLSP-DLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSP-----------NLDVS-GFYTQQS--LSHNKLRTTHFXXXXXXXXXXXQN-------ALAWGGLKQQQQ---NHVVQ----NRGRYAN----RTLGLAPSAWPPL 857 MA+ LDDGEFWLP QFLTDDD D + TN++N + K+GF LE D KSLFPFE P GFG+ G S DL SPVESV+GSTETESDE DY+AGLTRQ+AH TLEDD+ FAA+ TK +S SPQSTLC + GCGC+QGSSR SP CQS+VSSPP TWDLLYAAAGEV R+RMNEE YG + G L P RKPSP + D + G Y++Q LSH +L+ T FQQLKQQQ +QQ + WGG +QQ Q N + Q NR +N R+LGL+PSAWPPL Sbjct: 1 MAQSLDDGEFWLPPQFLTDDDILMD-LSMTNNSNIKKSSNNKEGFDLEADATKSLFPFEFPYGFGAFGHSSSDLSSPVESVVGSTETESDEEDYIAGLTRQIAHSTLEDDA------FAADKTKARFVSGSPQSTLCTVGRGCGCRQGSSRGSPGCQSQVSSPPETWDLLYAAAGEVARMRMNEESYGYHQHNGGLLCPPRKPSPISVPLKNHHPNHFDAAGGIYSRQHQLLSHQRLQATQFQQLKQQQQQQQQQMMKQQQGSSVWGGPQQQTQSKPNGLYQVGGMNRLTRSNSNNGRSLGLSPSAWPPL 303
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: V4SP55_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011799mg PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 2.515e-81 Identity = 173/308 (56.17%), Postives = 202/308 (65.58%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-----SLKDGFGLELDGNKSLFPFEIPGGFGSLGLSP-DLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPS----------PNL--DVSGFYTQQS--LSHNKLRTTHFXXXXXXXXXXXQN-----ALAWGGLKQQQQ---NHVVQ----NRGRYAN----RTLGLAPSAWPPL 857 MA+ LDDGEFWLP QFLTDDD D + TN++N + K+GF LE D KSLFPFE P GFG+ G S DL SPVESV+GSTETESDE DY+AGLTRQ+AH TLEDD+ FAA+ TK +S SPQSTLC + GCGC+QGSSR SP CQS+VSSPP TWDLLYAAAGEV R+RMNEE YG + G L P RKPS PN G Y++Q LSH +L+ T FQQLKQQQ +Q + WGG +QQ Q N + Q NR +N R+LGL+PSAWPPL Sbjct: 1 MAQSLDDGEFWLPPQFLTDDDILMD-LSMTNNSNIQKSSNNKEGFDLEADATKSLFPFEFPYGFGAFGHSSSDLSSPVESVVGSTETESDEEDYIAGLTRQIAHSTLEDDA------FAADKTKARFVSGSPQSTLCTVGRGCGCRQGSSRGSPGCQSQVSSPPETWDLLYAAAGEVARMRMNEESYGYHQHNGGLLCPPRKPSAISVPLKNHHPNHFDSAGGIYSRQHQLLSHQRLQATQFQQLKQQQQQQQMMKQQQGSSVWGGPQQQTQSKPNGLYQVGGMNRLTRSNSNNGRSLGLSPSAWPPL 301
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: V4SZ17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011799mg PE=4 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 4.373e-81 Identity = 173/308 (56.17%), Postives = 202/308 (65.58%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-----SLKDGFGLELDGNKSLFPFEIPGGFGSLGLSP-DLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPS----------PNL--DVSGFYTQQS--LSHNKLRTTHFXXXXXXXXXXXQN-----ALAWGGLKQQQQ---NHVVQ----NRGRYAN----RTLGLAPSAWPPL 857 MA+ LDDGEFWLP QFLTDDD D + TN++N + K+GF LE D KSLFPFE P GFG+ G S DL SPVESV+GSTETESDE DY+AGLTRQ+AH TLEDD+ FAA+ TK +S SPQSTLC + GCGC+QGSSR SP CQS+VSSPP TWDLLYAAAGEV R+RMNEE YG + G L P RKPS PN G Y++Q LSH +L+ T FQQLKQQQ +Q + WGG +QQ Q N + Q NR +N R+LGL+PSAWPPL Sbjct: 1 MAQSLDDGEFWLPPQFLTDDDILMD-LSMTNNSNIQKSSNNKEGFDLEADATKSLFPFEFPYGFGAFGHSSSDLSSPVESVVGSTETESDEEDYIAGLTRQIAHSTLEDDA------FAADKTKARFVSGSPQSTLCTVGRGCGCRQGSSRGSPGCQSQVSSPPETWDLLYAAAGEVARMRMNEESYGYHQHNGGLLCPPRKPSAISVPLKNHHPNHFDSAGGIYSRQHQLLSHQRLQATQFQQLKQQQQQQQMMKQQQGSSVWGGPQQQTQSKPNGLYQVGGMNRLTRSNSNNGRSLGLSPSAWPPL 301
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A067F441_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012540mg PE=4 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 5.772e-81 Identity = 174/310 (56.13%), Postives = 205/310 (66.13%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-----SLKDGFGLELDGNKSLFPFEIPGGFGSLGLSP-DLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSP-----------NLDVS-GFYTQQS--LSHNKLRTTHFXXXXXXXXXXXQNAL-------AWGGLKQQQQ---NHVVQ----NRGRYAN----RTLGLAPSAWPPL 857 MA+ LDDGEFWLP QFLTDDD D + TN++N + K+GF LE D KSLFPFE P GFG+ G S DL SPVESV+GSTETESDE DY+AGLTRQ+AH TLEDD+ FAA+ TK +S SPQSTLC + GCGC+QGSSR SP CQS+VSSPP TWDLLYAAAGEV R+RMNEE YG + G L P RKPSP + D + G Y++Q LSH +L+ T FQQLKQQQ +QQ + WGG +QQ Q N + Q NR +N R+LGL+PSAWPPL Sbjct: 1 MAQSLDDGEFWLPPQFLTDDDILMD-LSMTNNSNIKKSSNNKEGFDLEADATKSLFPFEFPYGFGAFGHSSSDLSSPVESVVGSTETESDEEDYIAGLTRQIAHSTLEDDA------FAADKTKARFVSGSPQSTLCTVGRGCGCRQGSSRGSPGCQSQVSSPPETWDLLYAAAGEVARMRMNEESYGYHQHNGGLLCPPRKPSPISVPLKNHHPNHFDAAGGIYSRQHQLLSHQRLQATQFQQLKQQQQQQQQQMMKQQQGSSVWGGPQQQTQSKPNGLYQVGGMNRLTRSNSNNGRSLGLSPSAWPPL 303
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: B9IG03_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10060g PE=4 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 6.115e-78 Identity = 166/298 (55.70%), Postives = 185/298 (62.08%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN--SLKDGFGL-ELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFS--NRGLLGPPARKP-------SPNLDVSGFYTQQSLSHNKL-------RTTHFXXXXXXXXXXXQNALAWGGL---KQQQQNHVVQNRGRYANRT----LGLAPSAWPPL 857 MAE LD+GEFWLP QFL DDD T N+ S KD FG E + KS P+E P GFGS G S DL SPVESV+GSTETESDE DYLAGLTRQMAH TLEDD +RND E TKGWVLS SPQSTLCA+ S CGC+QGSSR SPN SSPP TWDLLY AAGEVER++MN E F+ +RGL GPP + P +P DVS + QQSL++ KL R QQ +Q Q N L G L K Q VVQNRGR LGL+ SAWPPL Sbjct: 1 MAESLDNGEFWLPPQFLLDDDTVLMEKNTANNLKNWSTKDVFGYSETEYGKSSVPYEFPYGFGSFGFSSDLSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDDFKRNDLPCGTEKTKGWVLSGSPQSTLCAVGSRCGCRQGSSRGSPNG----SSPPATWDLLYEAAGEVERMKMNNEEGCCFNSQSRGLSGPPRKPPPISIPSKNPISDVSLYQQQQSLAYQKLQASQQLRRQVMMQQQQQGVWGGQNNILGTGVLFPQKPHQTQPVVQNRGRNITSVGRGPLGLSASAWPPL 294
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: B9IG04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10060g PE=4 SV=2) HSP 1 Score: 256.914 bits (655), Expect = 2.400e-77 Identity = 166/298 (55.70%), Postives = 185/298 (62.08%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN--SLKDGFGL-ELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFS--NRGLLGPPARKP-------SPNLDVSGFYTQQSLSHNKL-------RTTHFXXXXXXXXXXXQNALAWGGL---KQQQQNHVVQNRGRYANRT----LGLAPSAWPPL 857 MAE LD+GEFWLP QFL DDD T N+ S KD FG E + KS P+E P GFGS G S DL SPVESV+GSTETESDE DYLAGLTRQMAH TLEDD +RND E TKGWVLS SPQSTLCA+ S CGC+QGSSR SPN SSPP TWDLLY AAGEVER++MN E F+ +RGL GPP + P +P DVS + QQSL++ KL R QQ +Q Q N L G L K Q VVQNRGR LGL+ SAWPPL Sbjct: 1 MAESLDNGEFWLPPQFLLDDDTVLMEKNTANNLKNWSTKDVFGYSETEYGKSSVPYEFPYGFGSFGFSSDLSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDDFKRNDLPCGTEKTKGWVLSGSPQSTLCAVGSRCGCRQGSSRGSPNG----SSPPATWDLLYEAAGEVERMKMNNEEGCCFNSQSRGLSGPPRKPPPISIPSKNPISDVSLYQQQQSLAYQKLQASQQLRRQVMMQQQQQGVWGGQNNILGTGVLFPQKPHQTQPVVQNRGRNITSVGRGPLGLSASAWPPL 294
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A067JYA3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25093 PE=4 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 1.334e-75 Identity = 159/294 (54.08%), Postives = 190/294 (64.63%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTN----DTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYG-GFSNRGLLGPPARKPSP-------NLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGG---------LKQQQQNHVVQNRGRYANR--TLGLAPSAWPPL 857 MAE LDDGEFWLP Q LTDDD F D K ++ + S KD FG E + +K PF+ P GFG G+S DL SPVESV+GSTE +EDY+AG+T +MA TL+DDSR E KGW +S SPQSTLC L SGCGC+QGS R SP S VSSPP TWDLLYAAAGEV R+RMNE YG RG+LGPP K SP N ++S Y QS + KL+ + FQQL+QQQ+MKQQ+++ WGG QQ QN VV RGR ++R +GL+PSAWP L Sbjct: 1 MAESLDDGEFWLPPQILTDDDIFVDNKKNSDVDKSNLKSYKDFFGSETEFSKPFVPFDFPYGFGYFGVSSDLSSPVESVVGSTEESDEEDYMAGVTCRMARSTLDDDSR------GKETNKGWFISGSPQSTLCGLGSGCGCRQGSRRGSP---SDVSSPPATWDLLYAAAGEVARMRMNENVYGFNGHTRGILGPPG-KSSPLVPLKNSNPEIS-VYPDQSFIYQKLQESQFQQLRQQQIMKQQSSVVWGGQTKGAVGFYQHQQTQNPVVHTRGRISSRPTAMGLSPSAWPSL 283 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020660 ID=g.arboreum_cottongen_reftransV1_0020660; Name=g.arboreum_cottongen_reftransV1_0020660; organism=Gossypium arboreum; type=contig; length=1082bpback to top |