g.arboreum_cottongen_reftransV1_0020660, g.arboreum_cottongen_reftransV1_0020660 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2RY42_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G178800 PE=4 SV=1) HSP 1 Score: 508.834 bits (1309), Expect = 4.108e-177 Identity = 260/268 (97.01%), Postives = 265/268 (98.88%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVK TN+TN+LKDGFGLELDG+KSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAH TLEDDSRRNDRSFAAENTKGW LSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQ+NHVVQNRGRYA+RTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKATNNTNNLKDGFGLELDGSKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHSTLEDDSRRNDRSFAAENTKGWALSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQENHVVQNRGRYASRTLGLAPSAW 268
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2S568_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G178800 PE=4 SV=1) HSP 1 Score: 508.834 bits (1309), Expect = 9.153e-177 Identity = 260/268 (97.01%), Postives = 265/268 (98.88%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVK TN+TN+LKDGFGLELDG+KSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAH TLEDDSRRNDRSFAAENTKGW LSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQ+NHVVQNRGRYA+RTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKATNNTNNLKDGFGLELDGSKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHSTLEDDSRRNDRSFAAENTKGWALSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQENHVVQNRGRYASRTLGLAPSAW 268
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2QC13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G178800 PE=4 SV=1) HSP 1 Score: 508.449 bits (1308), Expect = 1.719e-176 Identity = 260/268 (97.01%), Postives = 265/268 (98.88%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVK TN+TN+LKDGFGLELDG+KSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAH TLEDDSRRNDRSFAAENTKGW LSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQ+NHVVQNRGRYA+RTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKATNNTNNLKDGFGLELDGSKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHSTLEDDSRRNDRSFAAENTKGWALSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQENHVVQNRGRYASRTLGLAPSAW 268
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2SZU2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G178800 PE=4 SV=1) HSP 1 Score: 505.753 bits (1301), Expect = 7.489e-176 Identity = 260/268 (97.01%), Postives = 265/268 (98.88%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVK TN+TN+LKDGFGLELDG+KSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAH TLEDDSRRNDRSFAAENTKGW LSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQ+NHVVQNRGRYA+RTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKATNNTNNLKDGFGLELDGSKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHSTLEDDSRRNDRSFAAENTKGWALSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQENHVVQNRGRYASRTLGLAPSAW 268
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0B0P1J6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24662 PE=4 SV=1) HSP 1 Score: 498.434 bits (1282), Expect = 2.662e-172 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 268
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2NUC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G178800 PE=4 SV=1) HSP 1 Score: 484.952 bits (1247), Expect = 2.897e-167 Identity = 252/268 (94.03%), Postives = 257/268 (95.90%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYANRTLGLAPSAW 857 MAEVLDDGEFWLPSQFLTDDDFFADGVK TN+TN+LKDGFGLELDG+KSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAH TLEDDSRRNDRSFAAENTK STLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQ+NHVVQNRGRYA+RTLGLAPSAW Sbjct: 1 MAEVLDDGEFWLPSQFLTDDDFFADGVKATNNTNNLKDGFGLELDGSKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDEDYLAGLTRQMAHSTLEDDSRRNDRSFAAENTK---------STLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYTQQSLSHNKLRTTHFQQLKQQQLMKQQNALAWGGLKQQQENHVVQNRGRYASRTLGLAPSAW 259
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A061ESJ4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021816 PE=4 SV=1) HSP 1 Score: 364.385 bits (934), Expect = 2.497e-119 Identity = 204/274 (74.45%), Postives = 225/274 (82.12%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFY-TQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGG--LKQQQQNHVVQNRGR--YANRTLGLAPSAW 857 MA+VLDDGEFWLP +FLTDDD F D K N+ + KDGFGLELDG+KSLFP+E GFGS G S DL SP+ESV+GSTETESDE DYLAGLTRQMAH TLED RRNDR F +EN+KGW+LS SPQSTLCA+ SGCGCKQGSSR SPN QSRVSSPPGTWDLLYAAAGEV R+RMNEE YGGF+NR LLGPPARKPSPNLDV G+Y QSLSH KL+ T FQQLKQ+QLMKQQNA WGG + Q +HVVQNRGR +NR LGL+PSAW Sbjct: 1 MADVLDDGEFWLPPEFLTDDDLFLDNSKAKNNHKNPKDGFGLELDGSKSLFPYEFRHGFGSFGFSSDLSSPIESVVGSTETESDEEDYLAGLTRQMAHSTLEDGFRRNDRVFGSENSKGWILSRSPQSTLCAVGSGCGCKQGSSRGSPNSQSRVSSPPGTWDLLYAAAGEVARMRMNEESYGGFNNRSLLGPPARKPSPNLDVPGYYPPHQSLSHQKLQATQFQQLKQEQLMKQQNASVWGGQKQQHQHHHHVVQNRGRNGNSNRPLGLSPSAW 274
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0B0PTV6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14772 PE=4 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 1.023e-110 Identity = 190/280 (67.86%), Postives = 210/280 (75.00%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ----QQNHVVQNRGR---YANRTLGLAPSAWPPL 857 MA+VLDD EFWLP QFLTDDD D K ++ + GFGLELD +KSLFP+E P GFGSLG S D SPVESV+GSTETESDE DYLAGLTRQMAH TLED RRN R+FA+EN KG V+SSSPQSTLC SGCGC QGSSR SP CQSRV SPPGTWDLLYAAA EV R+RM+EE YGG +NRGLLG ARK SPN DV+GFY QSL+H KL+ FQ LKQQ LMKQQNA W G KQQ NHVVQ+R R +NR +GL+ SAW PL Sbjct: 1 MAQVLDDAEFWLPPQFLTDDDLGIDNSKAKSNPKYVDGGFGLELDSSKSLFPYEFPYGFGSLGFSSDPSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGIRRNVRAFASENPKGRVMSSSPQSTLCVSRSGCGCMQGSSRGSPTCQSRVPSPPGTWDLLYAAAEEVARMRMSEESYGGLNNRGLLGSSARKFSPNADVTGFYLPTQSLAHQKLQAAQFQMLKQQLLMKQQNASVWAGQKQQLHSHHHNHVVQSRVRSNNSSNRPMGLSQSAWTPL 280
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2TME1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G109000 PE=4 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 2.659e-109 Identity = 189/280 (67.50%), Postives = 210/280 (75.00%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFY-TQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ----QQNHVVQNRGR---YANRTLGLAPSAWPPL 857 MA+VLDD EF LP QFLTDDD D K ++ + GFGLEL G+KSLFP+E P GFGSLG S D SPVESV+GSTETESDE DYLAGLTRQMAH TLED RRNDR+F++EN KG V+SSSPQSTLC SGC C QGSSR SP CQSRV PPGTWDLLYAAA EV R+RM+EE YGG +NRGLLG ARK SPN DV+GFY QS +H KL+T FQ LKQQQLMKQQNA W G KQQ NHVVQ+R R +NR +GL+ SAWPPL Sbjct: 1 MAQVLDDAEFCLPPQFLTDDDLVMDNSKAKSNPKYVDGGFGLELGGSKSLFPYEFPYGFGSLGFSSDPSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGIRRNDRAFSSENPKGRVMSSSPQSTLCVSRSGCSCMQGSSRGSPTCQSRVPPPPGTWDLLYAAAEEVARMRMSEESYGGLNNRGLLGSSARKFSPNADVTGFYLPTQSHAHQKLQTAQFQMLKQQQLMKQQNASVWAGQKQQLHSHHHNHVVQSRVRSNNSSNRPMGLSQSAWPPL 280
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2V4U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G109000 PE=4 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 1.878e-108 Identity = 189/280 (67.50%), Postives = 210/280 (75.00%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ----QQNHVVQNRGR---YANRTLGLAPSAWPPL 857 MA+VLDD EF LP QFLTDDD D K ++ + GFGLEL G+KSLFP+E P GFGSLG S D SPVESV+GSTETESDE DYLAGLTRQMAH TLED RRNDR+F++EN KG V+SSSPQSTLC SGC C QGSSR SP CQSRV PPGTWDLLYAAA EV R+RM+EE YGG +NRGLLG ARK SPN DV+GFY QS +H KL+T FQ LKQQQLMKQQNA W G KQQ NHVVQ+R R +NR +GL+ SAWPPL Sbjct: 1 MAQVLDDAEFCLPPQFLTDDDLVMDNSKAKSNPKYVDGGFGLELGGSKSLFPYEFPYGFGSLGFSSDPSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGIRRNDRAFSSENPKGRVMSSSPQSTLCVSRSGCSCMQGSSRGSPTCQSRVPPPPGTWDLLYAAAEEVARMRMSEESYGGLNNRGLLGSSARKFSPNADVTGFYLPTQSHAHQKLQTAQFQMLKQQQLMKQQNASVWAGQKQQLHSHHHNHVVQSRVRSNNSSNRPMGLSQSAWPPL 280 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020660 ID=g.arboreum_cottongen_reftransV1_0020660; Name=g.arboreum_cottongen_reftransV1_0020660; organism=Gossypium arboreum; type=contig; length=1082bpback to top |