g.arboreum_cottongen_reftransV1_0000098, g.arboreum_cottongen_reftransV1_0000098 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0B0N6J9_GOSAR (Lysine-specific histone demethylase 1-like protein OS=Gossypium arboreum GN=F383_08528 PE=4 SV=1) HSP 1 Score: 513.072 bits (1320), Expect = 2.452e-165 Identity = 263/265 (99.25%), Postives = 264/265 (99.62%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTT+GRLHLAK LLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP Sbjct: 1226 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTSGRLHLAKTLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 1490
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0D2VVJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046900 PE=4 SV=1) HSP 1 Score: 502.286 bits (1292), Expect = 9.955e-163 Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAME AQRRSESGRDEV DIIKRLEAVELSNVLYKNSLDRAWVLSREALL+DMFFNVKTT+GRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRK LKDTASGKPPLHSQHGAFESK SLQDPFPAGKQYP Sbjct: 1226 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEAAQRRSESGRDEVGDIIKRLEAVELSNVLYKNSLDRAWVLSREALLRDMFFNVKTTSGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKSLKDTASGKPPLHSQHGAFESKASLQDPFPAGKQYP 1490
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0D2V1W5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046900 PE=4 SV=1) HSP 1 Score: 501.901 bits (1291), Expect = 1.271e-162 Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAME AQRRSESGRDEV DIIKRLEAVELSNVLYKNSLDRAWVLSREALL+DMFFNVKTT+GRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRK LKDTASGKPPLHSQHGAFESK SLQDPFPAGKQYP Sbjct: 1226 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEAAQRRSESGRDEVGDIIKRLEAVELSNVLYKNSLDRAWVLSREALLRDMFFNVKTTSGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKSLKDTASGKPPLHSQHGAFESKASLQDPFPAGKQYP 1490
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0D2V1W1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046900 PE=4 SV=1) HSP 1 Score: 501.516 bits (1290), Expect = 5.109e-161 Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAME AQRRSESGRDEV DIIKRLEAVELSNVLYKNSLDRAWVLSREALL+DMFFNVKTT+GRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRK LKDTASGKPPLHSQHGAFESK SLQDPFPAGKQYP Sbjct: 1226 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEAAQRRSESGRDEVGDIIKRLEAVELSNVLYKNSLDRAWVLSREALLRDMFFNVKTTSGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKSLKDTASGKPPLHSQHGAFESKASLQDPFPAGKQYP 1490
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0D2SEI6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G110900 PE=4 SV=1) HSP 1 Score: 488.419 bits (1256), Expect = 1.766e-156 Identity = 254/265 (95.85%), Postives = 257/265 (96.98%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDML RPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAME AQR SESGRDEVRDIIKRLEAVELSNVLYKNSLDRA +LSREALL+DMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLV+VWLEVFRKAKASSKRK LKD ASGKPPLHSQHGAFESK SLQDPF AGKQYP Sbjct: 1179 SGEDYDMLARPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEAAQRHSESGRDEVRDIIKRLEAVELSNVLYKNSLDRARILSREALLRDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVNVWLEVFRKAKASSKRKSLKDPASGKPPLHSQHGAFESKESLQDPFSAGKQYP 1443
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A061FC63_THECC (Lysine-specific histone demethylase 1 isoform 1 OS=Theobroma cacao GN=TCM_034163 PE=4 SV=1) HSP 1 Score: 467.233 bits (1201), Expect = 2.995e-148 Identity = 242/265 (91.32%), Postives = 253/265 (95.47%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGND+TAEVEAME AQR+SES +DEVRDIIKRLEAVELSNVLYKNSLDRA +L+REALL+DMFFNVKTT GRLHLAKKLLGLPVESLKSFAGTKEGL+TLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDL+AVRSSGIGKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRKAKASSKRK LKD ASGKPPL S HGAFE+K SLQDP AG QYP Sbjct: 1320 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDHTAEVEAMEAAQRQSESEKDEVRDIIKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFNVKTTVGRLHLAKKLLGLPVESLKSFAGTKEGLTTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLVAVRSSGIGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKAKASSKRKNLKDAASGKPPLRSHHGAFENKRSLQDPLSAGSQYP 1584
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A061FDX8_THECC (Lysine-specific histone demethylase 1 isoform 3 OS=Theobroma cacao GN=TCM_034163 PE=4 SV=1) HSP 1 Score: 467.618 bits (1202), Expect = 3.244e-148 Identity = 242/265 (91.32%), Postives = 253/265 (95.47%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGND+TAEVEAME AQR+SES +DEVRDIIKRLEAVELSNVLYKNSLDRA +L+REALL+DMFFNVKTT GRLHLAKKLLGLPVESLKSFAGTKEGL+TLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDL+AVRSSGIGKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRKAKASSKRK LKD ASGKPPL S HGAFE+K SLQDP AG QYP Sbjct: 1350 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDHTAEVEAMEAAQRQSESEKDEVRDIIKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFNVKTTVGRLHLAKKLLGLPVESLKSFAGTKEGLTTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLVAVRSSGIGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKAKASSKRKNLKDAASGKPPLRSHHGAFENKRSLQDPLSAGSQYP 1614
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A061FCZ0_THECC (Lysine-specific histone demethylase 1 isoform 2 OS=Theobroma cacao GN=TCM_034163 PE=4 SV=1) HSP 1 Score: 467.233 bits (1201), Expect = 3.547e-148 Identity = 242/265 (91.32%), Postives = 253/265 (95.47%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGND+TAEVEAME AQR+SES +DEVRDIIKRLEAVELSNVLYKNSLDRA +L+REALL+DMFFNVKTT GRLHLAKKLLGLPVESLKSFAGTKEGL+TLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDL+AVRSSGIGKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRKAKASSKRK LKD ASGKPPL S HGAFE+K SLQDP AG QYP Sbjct: 1350 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDHTAEVEAMEAAQRQSESEKDEVRDIIKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFNVKTTVGRLHLAKKLLGLPVESLKSFAGTKEGLTTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLVAVRSSGIGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKAKASSKRKNLKDAASGKPPLRSHHGAFENKRSLQDPLSAGSQYP 1614
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A061FCZ5_THECC (Lysine-specific histone demethylase 1 isoform 6 OS=Theobroma cacao GN=TCM_034163 PE=4 SV=1) HSP 1 Score: 466.848 bits (1200), Expect = 5.133e-148 Identity = 242/265 (91.32%), Postives = 253/265 (95.47%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGND+TAEVEAME AQR+SES +DEVRDIIKRLEAVELSNVLYKNSLDRA +L+REALL+DMFFNVKTT GRLHLAKKLLGLPVESLKSFAGTKEGL+TLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDL+AVRSSGIGKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRKAKASSKRK LKD ASGKPPL S HGAFE+K SLQDP AG QYP Sbjct: 1350 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDHTAEVEAMEAAQRQSESEKDEVRDIIKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFNVKTTVGRLHLAKKLLGLPVESLKSFAGTKEGLTTLNSWMLDSMGKDGTQLLRHCVRLLVLVSTDLVAVRSSGIGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKAKASSKRKNLKDAASGKPPLRSHHGAFENKRSLQDPLSAGSQYP 1614
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A067HAT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046008mg PE=4 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 1.753e-129 Identity = 218/267 (81.65%), Postives = 234/267 (87.64%), Query Frame = -1 Query: 37 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASS--------------KRKPLKDTASGKPPLHSQHGAFESKPS 795 SGEDYD+LGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVR+IDI TTGND+TAEVEAME AQ +SES DEVRDI +RLEAVELSNVLYKNSLDRA +L+RE+LLQDMFFN KTTAGRLHLAK+LL LPV +LKSFAGT+EGL+TLNSW+LDSMGKDGTQLLRHCVRLLV VSTDLLAVR SGIGKTV+EK+CVHTSRDIRAIASQLVSVWLEVFRK KASS KRK LKD +SGKPPLHS HG ESK S Sbjct: 1304 SGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGNDFTAEVEAMEAAQMQSESEGDEVRDITRRLEAVELSNVLYKNSLDRALILTRESLLQDMFFNAKTTAGRLHLAKELLNLPVATLKSFAGTREGLTTLNSWILDSMGKDGTQLLRHCVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVFRKEKASSRLKLLKQSTAVDSIKRKSLKDPSSGKPPLHSHHGGLESKVS 1570
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 4.610e-100 Identity = 166/232 (71.55%), Postives = 200/232 (86.21%), Query Frame = -1 Query: 100 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLK 795 SGEDYD+LGRPV+NCLFFAGEATCKEHPDTVGGAM++G+REAVR+IDI +GNDYTAE+E +E AQR+S RDEVRD+IKRLE VELSNVL +R++LL++MFF+ KTT GRLHLAK+LL LP E+LKSFAGTKEGL+ LNSW+LDSMGK+GTQLLRHCV +LV V++DL A+R SGIGKTVKEK+C HTSRDIRAIASQLV+VWL+++RK KA+S +K L+ Sbjct: 1057 SGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREAVRIIDILRSGNDYTAEIETLEKAQRKSVPVRDEVRDLIKRLEVVELSNVL-----------ARQSLLRNMFFSAKTTVGRLHLAKELLNLPGETLKSFAGTKEGLAVLNSWILDSMGKNGTQLLRHCVHILVRVTSDLFALRLSGIGKTVKEKVCAHTSRDIRAIASQLVNVWLDLYRKEKANSGKKSLR 1277
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.935e-9 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = -1 Query: 652 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDI 795 SG DYD+L V N LFFAGEAT ++HP T+ GA LSGLREA +++ + Sbjct: 549 SGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREASKILHV 596
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_MOUSE (Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 7.336e-8 Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1 Query: 604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795 SG DYD++ +P+ LFFAGE T + +P TV GA+LSGLREA R+ D F G YT +A G Sbjct: 770 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 844
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_HUMAN (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 7.824e-8 Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1 Query: 604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795 SG DYD++ +P+ LFFAGE T + +P TV GA+LSGLREA R+ D F G YT +A G Sbjct: 769 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 843
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.209e-7 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = -1 Query: 658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795 SG DYD+L V + LFFAGEAT + +P T+ GA+LSGLREA +++ Sbjct: 551 SGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKIL 596
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 9.092e-7 Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = -1 Query: 658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795 SG+DYD+L V + +FFAGEAT + +P T+ GA+LSG REA ++ Sbjct: 668 SGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIV 713 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000098 ID=g.arboreum_cottongen_reftransV1_0000098; Name=g.arboreum_cottongen_reftransV1_0000098; organism=Gossypium arboreum; type=contig; length=795bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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