g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: I3SLF6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.016e-65 Identity = 93/134 (69.40%), Postives = 117/134 (87.31%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HT+NVN +AV D TRLAIK M+AL++PG IIN GS +GL+P + DP+Y+GSKGGVV+FTR+L YKR+GIR+NVLCPE + TEMG K+DP+ +S+MGGFVPM++VVKGAFELITDES+AG CLWI+NRRG+ YW Sbjct: 51 HTLNVNFIAVFDTTRLAIKAMEALKRPGTIINLGSASGLYPMYGDPVYTGSKGGVVMFTRALRLYKRQGIRINVLCPEFIETEMGLKVDPRLISMMGGFVPMDMVVKGAFELITDESKAGHCLWITNRRGLEYW 184
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VZH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 1.650e-65 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: V4UAI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028010mg PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 3.864e-65 Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T++VNL+AVIDCT+ AI MQA +KPGVIIN GS AGL+P + DPIYS SKGGVVLFTRSLTPYKR+GIR+NVLCPE V+TEMG K+ K + LMGGFVPME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TLDVNLIAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPMYNDPIYSASKGGVVLFTRSLTPYKRKGIRINVLCPEFVQTEMGLKVASKLIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A067L1M2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01631 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.578e-64 Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N NLVAVIDCTRLAIK M+A QKPGVIIN GS +GL+P + DP YS SKGGVV+FTRSL PYKR+GIRVNVLCPE V TEMG K++ K V MGGFVPM++V+KGAFELI+DES+A SCLWI+NRRGM YW Sbjct: 122 TVNANLVAVIDCTRLAIKAMKAAQKPGVIINLGSASGLYPMYHDPTYSASKGGVVMFTRSLVPYKRQGIRVNVLCPEFVETEMGAKVNAKLVDRMGGFVPMQMVIKGAFELISDESKASSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.945e-64 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Cavia porcellus GN=HPGD PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.188e-15 Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = -1 Query: 5 TINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKR---EGIRVNVLCPEVVRT------EMGEKLDPKYVSLMG---------GFVPMELVVKGAFELITDESRAGSCLWISNRRGMVY 400 T+ +NLV+VI T L + M Q + GVIIN S AGL P P+Y SK G++ FTRS ++ G+R+N +CP V T E E + P Y+ G G + E++ G LI D+ G+ + I+ G+ + Sbjct: 103 TLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGP-YIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Bos taurus GN=HPGD PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 9.282e-14 Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = -1 Query: 5 TINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDP-----KYVSLMG---------GFVPMELVVKGAFELITDESRAGSCLWISNRRGMVY 400 T+ +NLV+VI T L + M Q + G+ IN S AGL P P+Y SK G+V FTRS G+R+N +CP V T + + ++ KY+ MG G + ++ G LI D++ G+ + I+ +G+ + Sbjct: 103 TLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Homo sapiens GN=HPGD PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.229e-13 Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = -1 Query: 5 TINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPME----------------LVVKGAFELITDESRAGSCLWISNRRGMVY 400 T+ +NLV+VI T L + M Q + G+IIN S AGL P P+Y SK G+V FTRS G+R+N +CP V T + E ++ + MG ++ + L+ G LI D++ G+ + I+ +G+ + Sbjct: 103 TLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKE--ENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Macaca fascicularis GN=HPGD PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.297e-13 Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = -1 Query: 5 TINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPME----------------LVVKGAFELITDESRAGSCLWISNRRGMVY 400 T+ +NLV+VI T L + M Q + G+IIN S AGL P P+Y SK G+V FTRS G+R+N +CP V T + E ++ + MG ++ + L+ G LI D++ G+ + I+ +G+ + Sbjct: 103 TLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKE--ENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Mus musculus GN=Hpgd PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.620e-13 Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = -1 Query: 5 HTINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVK----------------GAFELITDESRAGSCLWISNRRGMVY 403 T+ +NLV+VI T L + M Q + G+IIN S AGL P P+Y SK G++ FTRS + G+R+NV+CP V T + E ++ + MG ++ + +K G LI D++ G+ + I+ +G+ + Sbjct: 102 QTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKE--ENMGQYIEYKDQIKAMMKFYGVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_MOUSE (Carbonyl reductase family member 4 OS=Mus musculus GN=Cbr4 PE=1 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 2.260e-10 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = -1 Query: 128 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKY 397 ++ NL+ + + A+KTM +Q+ G I+N GS GL YS +KGG+V F+RSL R+ IRVNV+ P +RT+M L ++ Sbjct: 104 LHTNLLGSMLTCKAAMKTM--IQQGGSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKEEH 192
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_RAT (Carbonyl reductase family member 4 OS=Rattus norvegicus GN=Cbr4 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 5.065e-10 Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -1 Query: 128 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKY 397 ++ NL+ + R A++TM +Q+ G I+N GS GL YS +KGG++ F+RSL R+ IRVNV+ P + T+M + L ++ Sbjct: 104 LHTNLLGTMLTCRAAMRTM--IQQGGSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKEEH 192
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase BacC OS=Bacillus subtilis (strain 168) GN=bacC PE=3 SV=2) HSP 1 Score: 58.5362 bits (140), Expect = 6.012e-10 Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = -1 Query: 143 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEK 397 + VNL + ++ A+K M A K G IINT S GL + P Y+ SKGGV+ T+S+ Y + IRVN +CP ++ T + EK Sbjct: 108 LQVNLTGMFLMSKHALKHMLAAGK-GNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEK 192
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DH12A_DANRE (Very-long-chain 3-oxoacyl-CoA reductase-A OS=Danio rerio GN=hsd17b12a PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.057e-10 Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = -1 Query: 134 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSL-TPYKREGIRVNVLCPEVVRTEMGEKLDP 397 INVN+ +V TRL + M+A K GVI+N S +G+FP L IYS +K V F+R L T YK +GI + + P V T+M + P Sbjct: 164 INVNITSVCQMTRLVLPRMEARAK-GVILNISSASGMFPVPLLTIYSSTKAFVDFFSRGLQTEYKCKGIIIQSVLPFFVATKMTKIRKP 251
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: BACC2_BACIU (Bacilysin biosynthesis oxidoreductase BacC OS=Bacillus subtilis GN=bacC PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 7.211e-10 Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = -1 Query: 143 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEK 397 +NVNL + ++ A+K M K G IINT S G+ + P Y+ SKGGV+ TRS+ Y + IRVN +CP ++ T + EK Sbjct: 108 LNVNLTGMFLMSKHALKYMLKSGK-GNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEK 192 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bpback to top |