g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001749
Unique Nameg.arboreum_cottongen_reftransV1_0001749
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length403
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001749:1..403 .
Chr7:38851917..38853944 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: I3SLF6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.016e-65
Identity = 93/134 (69.40%), Postives = 117/134 (87.31%), Query Frame = -1
Query:    2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403
            HT+NVN +AV D TRLAIK M+AL++PG IIN GS +GL+P + DP+Y+GSKGGVV+FTR+L  YKR+GIR+NVLCPE + TEMG K+DP+ +S+MGGFVPM++VVKGAFELITDES+AG CLWI+NRRG+ YW
Sbjct:   51 HTLNVNFIAVFDTTRLAIKAMEALKRPGTIINLGSASGLYPMYGDPVYTGSKGGVVMFTRALRLYKRQGIRINVLCPEFIETEMGLKVDPRLISMMGGFVPMDMVVKGAFELITDESKAGHCLWITNRRGLEYW 184          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VZH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.650e-65
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P   DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K   K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: V4UAI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028010mg PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.864e-65
Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T++VNL+AVIDCT+ AI  MQA +KPGVIIN GS AGL+P + DPIYS SKGGVVLFTRSLTPYKR+GIR+NVLCPE V+TEMG K+  K + LMGGFVPME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TLDVNLIAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPMYNDPIYSASKGGVVLFTRSLTPYKRKGIRINVLCPEFVQTEMGLKVASKLIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 254          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A067L1M2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01631 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.578e-64
Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N NLVAVIDCTRLAIK M+A QKPGVIIN GS +GL+P + DP YS SKGGVV+FTRSL PYKR+GIRVNVLCPE V TEMG K++ K V  MGGFVPM++V+KGAFELI+DES+A SCLWI+NRRGM YW
Sbjct:  122 TVNANLVAVIDCTRLAIKAMKAAQKPGVIINLGSASGLYPMYHDPTYSASKGGVVMFTRSLVPYKRQGIRVNVLCPEFVETEMGAKVNAKLVDRMGGFVPMQMVIKGAFELISDESKASSCLWITNRRGMEYW 254          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.945e-64
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P   DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K   K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.506e-8
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = -1
Query:  116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397
            +++NLV  I   ++A+K M   Q+ G I+N GS  G        IY  SK G++ F++SL     +  IRVNV+ P  +RT+M   L    ++ M
Sbjct:  103 LSINLVGTIQTCKVALKGM-IQQQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDMTSDLKEDSLNKM 196          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.809e-8
Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = -1
Query:   53 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEKL--DPKYVSLM------GGFVPMELVVKGAFELITDES 400
            + +VNL AVI  +++  + + A   PGVI+N  S A         +Y  +KG +   T+     L P+K   IRVN + P VV T MG+    DP+    M      G F  +E VV     L++D S
Sbjct:  103 SFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHK---IRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRS 227          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.159e-8
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -1
Query:  116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397
            ++VNLV  I   +LA+++M   Q+ G I+N GS  G        IY  SK G++ F++SL     +  IRVNV+ P  + T+M   L+   ++ M
Sbjct:  103 LSVNLVGTIQTCKLALRSM-IQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLGLEEDSLTKM 196          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 3.166e-8
Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = -1
Query:   98 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREG----IRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPM 403
              I +NL  V  CT+ A+K M   +K G IIN  S  GL        Y+ +KGGV+ F+++     REG    I VNV+CP  + ++M  +L       + G +P+
Sbjct:  180 EVIALNLTGVFLCTQAAVKIMMK-KKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAA---REGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIPL 281          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: ADH1_CERCO (Alcohol dehydrogenase 1 OS=Ceratitis cosyra GN=ADH1 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.227e-8
Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKP--GVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP---YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMEL--------VVKGAFELITDESRAGSCLWISNR------RGMVYW 400
            T+N+NL+ +I+ T  AI  M   +K   GVI+N  S  GL P     IY  SK GV+ F+RSL     Y+  GI V   CP +  T +   +  KY       +  +L         V GA      E R    ++ISN+      +  VYW
Sbjct:  102 TMNINLIGLINTTLEAIPLMDKNKKGRGGVIVNIASVLGLEPGPPAAIYCASKFGVMGFSRSLGDPHYYEHTGIAVVTFCPGLTDTPLKNNVATKYTFDYSKEIGEKLNHSKTQKPEVCGAHLAQVIELRDNGAIYISNQGTLTKVKPSVYW 253          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3SLF6_MEDTR1.016e-6569.40Uncharacterized protein OS=Medicago truncatula PE=... [more]
M5VZH5_PRUPE1.650e-6577.61Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4UAI8_9ROSI3.864e-6576.69Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067L1M2_JATCU1.578e-6474.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5VMG3_PRUPE1.945e-6477.61Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CBR4_XENLA2.506e-834.74Carbonyl reductase family member 4 OS=Xenopus laev... [more]
DCXR_BOVIN2.809e-832.81L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]
CBR4_XENTR3.159e-834.74Carbonyl reductase family member 4 OS=Xenopus trop... [more]
FABG_ARATH3.166e-833.963-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
ADH1_CERCO6.227e-832.24Alcohol dehydrogenase 1 OS=Ceratitis cosyra GN=ADH... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 62..79
score: 38.32
coord: 42..61
score: 30.79
coord: 16..32
score: 32.46
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 2..85
e-value: 2.1E-17
score: 63.1
IPR016040NAD(P)-binding domainGENE3D3.40.50.720coord: 3..122
e-value: 1.0E-21
score: 76.8
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..120

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bp
GCCAATATACCATGCCTCTGCGGTTTGAAATCCATAGGCAAGAACCAGCT
CTGCTTTCATCAGTGATAAGCTCGAAAGCACCTTTTACCACCAACTCCAT
TGGCACAAAGCCTCCCATTAGAGATACATATTTGGGGTCCAGTTTTTCTC
CCATCTCTGTTCGAACAACCTCAGGGCAAAGAACATTGACACGTATTCCT
TCACGTTTGTACGGAGTTAGTGATCTAGTAAACAAGACAACACCTCCTTT
TGAGCCAGAGTAAATGGGGTCCAAGAAAAATGGGAAAAGACCAGCATAAG
ATCCTGTATTGATTATCACCCCTGGCTTTTGCAGAGCTTGCATAGTTTTA
ATTGCAAGGCGAGTACAATCAATAACTGCAACCAGGTTGACATTAATGGT
GTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom