g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: I3SLF6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.016e-65 Identity = 93/134 (69.40%), Postives = 117/134 (87.31%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HT+NVN +AV D TRLAIK M+AL++PG IIN GS +GL+P + DP+Y+GSKGGVV+FTR+L YKR+GIR+NVLCPE + TEMG K+DP+ +S+MGGFVPM++VVKGAFELITDES+AG CLWI+NRRG+ YW Sbjct: 51 HTLNVNFIAVFDTTRLAIKAMEALKRPGTIINLGSASGLYPMYGDPVYTGSKGGVVMFTRALRLYKRQGIRINVLCPEFIETEMGLKVDPRLISMMGGFVPMDMVVKGAFELITDESKAGHCLWITNRRGLEYW 184
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VZH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 1.650e-65 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: V4UAI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028010mg PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 3.864e-65 Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T++VNL+AVIDCT+ AI MQA +KPGVIIN GS AGL+P + DPIYS SKGGVVLFTRSLTPYKR+GIR+NVLCPE V+TEMG K+ K + LMGGFVPME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TLDVNLIAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPMYNDPIYSASKGGVVLFTRSLTPYKRKGIRINVLCPEFVQTEMGLKVASKLIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A067L1M2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01631 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.578e-64 Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N NLVAVIDCTRLAIK M+A QKPGVIIN GS +GL+P + DP YS SKGGVV+FTRSL PYKR+GIRVNVLCPE V TEMG K++ K V MGGFVPM++V+KGAFELI+DES+A SCLWI+NRRGM YW Sbjct: 122 TVNANLVAVIDCTRLAIKAMKAAQKPGVIINLGSASGLYPMYHDPTYSASKGGVVMFTRSLVPYKRQGIRVNVLCPEFVETEMGAKVNAKLVDRMGGFVPMQMVIKGAFELISDESKASSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.945e-64 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.506e-8 Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = -1 Query: 116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397 +++NLV I ++A+K M Q+ G I+N GS G IY SK G++ F++SL + IRVNV+ P +RT+M L ++ M Sbjct: 103 LSINLVGTIQTCKVALKGM-IQQQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDMTSDLKEDSLNKM 196
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.809e-8 Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = -1 Query: 53 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEKL--DPKYVSLM------GGFVPMELVVKGAFELITDES 400 + +VNL AVI +++ + + A PGVI+N S A +Y +KG + T+ L P+K IRVN + P VV T MG+ DP+ M G F +E VV L++D S Sbjct: 103 SFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHK---IRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRS 227
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 3.159e-8 Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -1 Query: 116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397 ++VNLV I +LA+++M Q+ G I+N GS G IY SK G++ F++SL + IRVNV+ P + T+M L+ ++ M Sbjct: 103 LSVNLVGTIQTCKLALRSM-IQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLGLEEDSLTKM 196
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 3.166e-8 Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = -1 Query: 98 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREG----IRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPM 403 I +NL V CT+ A+K M +K G IIN S GL Y+ +KGGV+ F+++ REG I VNV+CP + ++M +L + G +P+ Sbjct: 180 EVIALNLTGVFLCTQAAVKIMMK-KKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAA---REGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIPL 281
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: ADH1_CERCO (Alcohol dehydrogenase 1 OS=Ceratitis cosyra GN=ADH1 PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 6.227e-8 Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKP--GVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP---YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMEL--------VVKGAFELITDESRAGSCLWISNR------RGMVYW 400 T+N+NL+ +I+ T AI M +K GVI+N S GL P IY SK GV+ F+RSL Y+ GI V CP + T + + KY + +L V GA E R ++ISN+ + VYW Sbjct: 102 TMNINLIGLINTTLEAIPLMDKNKKGRGGVIVNIASVLGLEPGPPAAIYCASKFGVMGFSRSLGDPHYYEHTGIAVVTFCPGLTDTPLKNNVATKYTFDYSKEIGEKLNHSKTQKPEVCGAHLAQVIELRDNGAIYISNQGTLTKVKPSVYW 253 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bpback to top |