g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001749
Unique Nameg.arboreum_cottongen_reftransV1_0001749
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001749:1..403 .
Chr7:38851917..38853944 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: I3SLF6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.016e-65
Identity = 93/134 (69.40%), Postives = 117/134 (87.31%), Query Frame = -1
Query:    2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403
            HT+NVN +AV D TRLAIK M+AL++PG IIN GS +GL+P + DP+Y+GSKGGVV+FTR+L  YKR+GIR+NVLCPE + TEMG K+DP+ +S+MGGFVPM++VVKGAFELITDES+AG CLWI+NRRG+ YW
Sbjct:   51 HTLNVNFIAVFDTTRLAIKAMEALKRPGTIINLGSASGLYPMYGDPVYTGSKGGVVMFTRALRLYKRQGIRINVLCPEFIETEMGLKVDPRLISMMGGFVPMDMVVKGAFELITDESKAGHCLWITNRRGLEYW 184          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VZH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.650e-65
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P   DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K   K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: V4UAI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028010mg PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.864e-65
Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T++VNL+AVIDCT+ AI  MQA +KPGVIIN GS AGL+P + DPIYS SKGGVVLFTRSLTPYKR+GIR+NVLCPE V+TEMG K+  K + LMGGFVPME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TLDVNLIAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPMYNDPIYSASKGGVVLFTRSLTPYKRKGIRINVLCPEFVQTEMGLKVASKLIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 254          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A067L1M2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01631 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.578e-64
Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N NLVAVIDCTRLAIK M+A QKPGVIIN GS +GL+P + DP YS SKGGVV+FTRSL PYKR+GIRVNVLCPE V TEMG K++ K V  MGGFVPM++V+KGAFELI+DES+A SCLWI+NRRGM YW
Sbjct:  122 TVNANLVAVIDCTRLAIKAMKAAQKPGVIINLGSASGLYPMYHDPTYSASKGGVVMFTRSLVPYKRQGIRVNVLCPEFVETEMGAKVNAKLVDRMGGFVPMQMVIKGAFELISDESKASSCLWITNRRGMEYW 254          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.945e-64
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1
Query:    2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400
            T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P   DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K   K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW
Sbjct:  122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.119e-9
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = -1
Query:    5 HTINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDP-----KYVSLMG---------GFVPMELVVKGAFELITDESRAGSCLWISNRRGMVY 403
             T+ +NLV+VI  T L +  M  Q   + G+IIN  S AGL P    P+Y  SK G++ FTRS        + G+R+NV+CP  V+T + E ++      +Y+             G +    +  G   LI D++  G+ + I+  +G+ +
Sbjct:  102 QTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 57.3806 bits (137), Expect = 1.425e-9
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  125 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYV 397
            ++ NL+  +   + A++TM   Q+ G I+N GS  GL       +YS SKGG+V F+R+L     R+ IRVNV+ P  V T+M + L  +++
Sbjct:  104 LHTNLLGSMLTCKAAMRTM-IQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHL 194          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB3_MOUSE (Testosterone 17-beta-dehydrogenase 3 OS=Mus musculus GN=Hsd17b3 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.613e-9
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = -1
Query:   92 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMEL 397
            I+ N+ +V+  T+L +K M++ +K G+I+N  S A L P+ L  +YS SK  V  F+++L+  Y+ +GI + VL P  + T M + L+ K       FV   L
Sbjct:  150 IHCNITSVVKMTQLVLKHMESRRK-GLILNISSGAALRPWPLYSLYSASKAFVYTFSKALSVEYRDKGIIIQVLTPYSISTPMTKYLNNKMTKTADEFVKESL 251          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus GN=CBR4 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.642e-9
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  125 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYV 397
            ++ NL+  +   R A+KTM   Q+ G I+N GS  GL       +YS SKGG+V F+R+L     ++ IRVNV+ P  + T+M + L+ + +
Sbjct:  104 LHTNLLGSMLTCRAALKTMIK-QQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKDLNEELL 194          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB3_HUMAN (Testosterone 17-beta-dehydrogenase 3 OS=Homo sapiens GN=HSD17B3 PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 5.762e-9
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = -1
Query:  122 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVS 397
            I+ N+ +V+  T+L +K M++ QK G+I+N  S   LFP+ L  +YS SK  V  F+++L   YK + + + VL P  V T M + L+   ++
Sbjct:  154 IHCNITSVVKMTQLILKHMESRQK-GLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAMTKYLNTNVIT 245          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.861e-9
Identity = 42/128 (32.81%), Postives = 59/128 (46.09%), Query Frame = -1
Query:   53 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLM------GGFVPMELVVKGAFELITDES 400
            + NVNL AVI  +++  + M A   PG I+N  S A         +Y  +KG + + T+     L P+K   IRVN + P VV T MG     DP    +M      G F  +E VV     L++  S
Sbjct:  103 SFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHK---IRVNAVNPTVVMTSMGRTNWSDPHKAKVMLDRIPLGKFAEVENVVDAILFLLSHRS 227          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB12_ANAPL (Very-long-chain 3-oxoacyl-CoA reductase OS=Anas platyrhynchos GN=HSD17B12 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.918e-9
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = -1
Query:   35 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSL-TPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPM-ELVVKGAFELITDESRAGSCL 397
            IN+N+++V   TRL +  M    K GVI+N  S AG++P  L  +YS SK  V  F+R L   YK +GI V  + P  V T+M +   P +        P  E  V+ A   +  +S+   CL
Sbjct:  157 ININIMSVCKMTRLVLPGMLERSK-GVILNISSAAGMYPTPLLTLYSASKAFVDYFSRGLHAEYKSKGIIVQSVMPYYVATKMSKISKPSFDK------PTPETYVRAAIGTVGLQSQTNGCL 272          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.406e-8
Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = -1
Query:   11 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLW-ISNRRGM 400
            + NVNL AVI  +++  K M A   PG I+N  S A         +Y  +KG + + T+     L P+K   IRVN + P VV T MG     DP     M   +P+     G F  +  E+   + L+ +SNR GM
Sbjct:  103 SFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHK---IRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPL-----GKFAEV--ENVVDTILFLLSNRSGM 229          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_MOUSE (L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 1.702e-8
Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = -1
Query:   11 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLW-ISNRRGM 400
            + NVNL AVI  +++  K M A   PG I+N  S A         +Y  +KG + + T+     L P+K   IRVN + P VV T MG     DP     M   +P+     G F  +  E+   + L+ +SNR GM
Sbjct:  103 SFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHK---IRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPL-----GKFAEV--ENVVDTILFLLSNRSGM 229          
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: FABG_MYCS2 (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=fabG PE=3 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 2.100e-8
Identity = 40/140 (28.57%), Postives = 66/140 (47.14%), Query Frame = -1
Query:    5 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELV-----VKGAFELITDESR---AGSCLWISNRRGMVY 397
            IN NL     C + A +TMQ  ++ G II  GS +G++       Y+ +K G++   RS++    + G+  NV+ P  + TEM   LD +  +    F+P + V     V GA   +  E     AG+ + +    GM +
Sbjct:  117 INTNLTGAFRCAQRASRTMQ-RKRFGRIIFIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELAKAGVTANVVAPGYIDTEMTRALDERIQAGALDFIPAKRVGTAEEVAGAVSFLASEDASYIAGAVIPVDGGMGMGH 255          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3SLF6_MEDTR1.016e-6569.40Uncharacterized protein OS=Medicago truncatula PE=... [more]
M5VZH5_PRUPE1.650e-6577.61Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4UAI8_9ROSI3.864e-6576.69Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067L1M2_JATCU1.578e-6474.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5VMG3_PRUPE1.945e-6477.61Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGDH_RAT1.119e-930.2615-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=... [more]
CBR4_HUMAN1.425e-936.96Carbonyl reductase family member 4 OS=Homo sapiens... [more]
DHB3_MOUSE1.613e-934.95Testosterone 17-beta-dehydrogenase 3 OS=Mus muscul... [more]
CBR4_BOVIN1.642e-936.96Carbonyl reductase family member 4 OS=Bos taurus G... [more]
DHB3_HUMAN5.762e-935.48Testosterone 17-beta-dehydrogenase 3 OS=Homo sapie... [more]
DCXR_MESAU5.861e-932.81L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
DHB12_ANAPL6.918e-934.96Very-long-chain 3-oxoacyl-CoA reductase OS=Anas pl... [more]
DCXR_CAVPO1.406e-833.58L-xylulose reductase OS=Cavia porcellus GN=DCXR PE... [more]
DCXR_MOUSE1.702e-833.58L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 ... [more]
FABG_MYCS22.100e-828.573-oxoacyl-[acyl-carrier-protein] reductase FabG OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 62..79
score: 38.32
coord: 42..61
score: 30.79
coord: 16..32
score: 32.46
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 2..85
e-value: 2.1E-17
score: 63.1
IPR016040NAD(P)-binding domainGENE3D3.40.50.720coord: 3..122
e-value: 1.0E-21
score: 76.8
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..120

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bp
GCCAATATACCATGCCTCTGCGGTTTGAAATCCATAGGCAAGAACCAGCT
CTGCTTTCATCAGTGATAAGCTCGAAAGCACCTTTTACCACCAACTCCAT
TGGCACAAAGCCTCCCATTAGAGATACATATTTGGGGTCCAGTTTTTCTC
CCATCTCTGTTCGAACAACCTCAGGGCAAAGAACATTGACACGTATTCCT
TCACGTTTGTACGGAGTTAGTGATCTAGTAAACAAGACAACACCTCCTTT
TGAGCCAGAGTAAATGGGGTCCAAGAAAAATGGGAAAAGACCAGCATAAG
ATCCTGTATTGATTATCACCCCTGGCTTTTGCAGAGCTTGCATAGTTTTA
ATTGCAAGGCGAGTACAATCAATAACTGCAACCAGGTTGACATTAATGGT
GTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom