g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: I3SLF6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.016e-65 Identity = 93/134 (69.40%), Postives = 117/134 (87.31%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HT+NVN +AV D TRLAIK M+AL++PG IIN GS +GL+P + DP+Y+GSKGGVV+FTR+L YKR+GIR+NVLCPE + TEMG K+DP+ +S+MGGFVPM++VVKGAFELITDES+AG CLWI+NRRG+ YW Sbjct: 51 HTLNVNFIAVFDTTRLAIKAMEALKRPGTIINLGSASGLYPMYGDPVYTGSKGGVVMFTRALRLYKRQGIRINVLCPEFIETEMGLKVDPRLISMMGGFVPMDMVVKGAFELITDESKAGHCLWITNRRGLEYW 184
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VZH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 1.650e-65 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: V4UAI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028010mg PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 3.864e-65 Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T++VNL+AVIDCT+ AI MQA +KPGVIIN GS AGL+P + DPIYS SKGGVVLFTRSLTPYKR+GIR+NVLCPE V+TEMG K+ K + LMGGFVPME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TLDVNLIAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPMYNDPIYSASKGGVVLFTRSLTPYKRKGIRINVLCPEFVQTEMGLKVASKLIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A067L1M2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01631 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.578e-64 Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N NLVAVIDCTRLAIK M+A QKPGVIIN GS +GL+P + DP YS SKGGVV+FTRSL PYKR+GIRVNVLCPE V TEMG K++ K V MGGFVPM++V+KGAFELI+DES+A SCLWI+NRRGM YW Sbjct: 122 TVNANLVAVIDCTRLAIKAMKAAQKPGVIINLGSASGLYPMYHDPTYSASKGGVVMFTRSLVPYKRQGIRVNVLCPEFVETEMGAKVNAKLVDRMGGFVPMQMVIKGAFELISDESKASSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMG3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002730mg PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.945e-64 Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVV-RTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 T+N+NL+AVIDCTRLAIKTMQA++KPGVIIN GS AGL+P DPIYSGSKGGVV FTRSL PYK +GIR+NVLCPE V RT+MG K K+VS+MGGFV ME+VVKGAFELITDES+AGSCLWI+NRRGM YW Sbjct: 122 TVNLNLIAVIDCTRLAIKTMQAVKKPGVIINMGSAAGLYPLDGDPIYSGSKGGVVQFTRSLVPYKHKGIRINVLCPEFVERTDMGLKAGSKFVSIMGGFVRMEMVVKGAFELITDESKAGSCLWITNRRGMEYW 255
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 1.119e-9 Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = -1 Query: 5 HTINVNLVAVIDCTRLAIKTM--QALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRS---LTPYKREGIRVNVLCPEVVRTEMGEKLDP-----KYVSLMG---------GFVPMELVVKGAFELITDESRAGSCLWISNRRGMVY 403 T+ +NLV+VI T L + M Q + G+IIN S AGL P P+Y SK G++ FTRS + G+R+NV+CP V+T + E ++ +Y+ G + + G LI D++ G+ + I+ +G+ + Sbjct: 102 QTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3) HSP 1 Score: 57.3806 bits (137), Expect = 1.425e-9 Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -1 Query: 125 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYV 397 ++ NL+ + + A++TM Q+ G I+N GS GL +YS SKGG+V F+R+L R+ IRVNV+ P V T+M + L +++ Sbjct: 104 LHTNLLGSMLTCKAAMRTM-IQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHL 194
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB3_MOUSE (Testosterone 17-beta-dehydrogenase 3 OS=Mus musculus GN=Hsd17b3 PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 1.613e-9 Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = -1 Query: 92 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMEL 397 I+ N+ +V+ T+L +K M++ +K G+I+N S A L P+ L +YS SK V F+++L+ Y+ +GI + VL P + T M + L+ K FV L Sbjct: 150 IHCNITSVVKMTQLVLKHMESRRK-GLILNISSGAALRPWPLYSLYSASKAFVYTFSKALSVEYRDKGIIIQVLTPYSISTPMTKYLNNKMTKTADEFVKESL 251
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus GN=CBR4 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.642e-9 Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -1 Query: 125 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYV 397 ++ NL+ + R A+KTM Q+ G I+N GS GL +YS SKGG+V F+R+L ++ IRVNV+ P + T+M + L+ + + Sbjct: 104 LHTNLLGSMLTCRAALKTMIK-QQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKDLNEELL 194
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB3_HUMAN (Testosterone 17-beta-dehydrogenase 3 OS=Homo sapiens GN=HSD17B3 PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 5.762e-9 Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = -1 Query: 122 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVS 397 I+ N+ +V+ T+L +K M++ QK G+I+N S LFP+ L +YS SK V F+++L YK + + + VL P V T M + L+ ++ Sbjct: 154 IHCNITSVVKMTQLILKHMESRQK-GLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAMTKYLNTNVIT 245
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.861e-9 Identity = 42/128 (32.81%), Postives = 59/128 (46.09%), Query Frame = -1 Query: 53 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLM------GGFVPMELVVKGAFELITDES 400 + NVNL AVI +++ + M A PG I+N S A +Y +KG + + T+ L P+K IRVN + P VV T MG DP +M G F +E VV L++ S Sbjct: 103 SFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHK---IRVNAVNPTVVMTSMGRTNWSDPHKAKVMLDRIPLGKFAEVENVVDAILFLLSHRS 227
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DHB12_ANAPL (Very-long-chain 3-oxoacyl-CoA reductase OS=Anas platyrhynchos GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 6.918e-9 Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = -1 Query: 35 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSL-TPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPM-ELVVKGAFELITDESRAGSCL 397 IN+N+++V TRL + M K GVI+N S AG++P L +YS SK V F+R L YK +GI V + P V T+M + P + P E V+ A + +S+ CL Sbjct: 157 ININIMSVCKMTRLVLPGMLERSK-GVILNISSAAGMYPTPLLTLYSASKAFVDYFSRGLHAEYKSKGIIVQSVMPYYVATKMSKISKPSFDK------PTPETYVRAAIGTVGLQSQTNGCL 272
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.406e-8 Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = -1 Query: 11 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLW-ISNRRGM 400 + NVNL AVI +++ K M A PG I+N S A +Y +KG + + T+ L P+K IRVN + P VV T MG DP M +P+ G F + E+ + L+ +SNR GM Sbjct: 103 SFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHK---IRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPL-----GKFAEV--ENVVDTILFLLSNRSGM 229
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_MOUSE (L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 1.702e-8 Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = -1 Query: 11 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEK--LDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLW-ISNRRGM 400 + NVNL AVI +++ K M A PG I+N S A +Y +KG + + T+ L P+K IRVN + P VV T MG DP M +P+ G F + E+ + L+ +SNR GM Sbjct: 103 SFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHK---IRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPL-----GKFAEV--ENVVDTILFLLSNRSGM 229
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: FABG_MYCS2 (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=fabG PE=3 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 2.100e-8 Identity = 40/140 (28.57%), Postives = 66/140 (47.14%), Query Frame = -1 Query: 5 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLT-PYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELV-----VKGAFELITDESR---AGSCLWISNRRGMVY 397 IN NL C + A +TMQ ++ G II GS +G++ Y+ +K G++ RS++ + G+ NV+ P + TEM LD + + F+P + V V GA + E AG+ + + GM + Sbjct: 117 INTNLTGAFRCAQRASRTMQ-RKRFGRIIFIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELAKAGVTANVVAPGYIDTEMTRALDERIQAGALDFIPAKRVGTAEEVAGAVSFLASEDASYIAGAVIPVDGGMGMGH 255 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bpback to top |