g.arboreum_cottongen_reftransV1_0001749, g.arboreum_cottongen_reftransV1_0001749 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A0D2S863_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042800 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 3.478e-70 Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HTINVNLVAVIDCTRLAIK+MQALQKPGVIIN GS AGL+P ++DPIYS +KGGVV+FTRSL PY+R+GIRVNVLCPE V+TEMGEK+ KY++L+GG+V ME VVKGAF+LI DESRAGSCLWI+NRRGM YW Sbjct: 121 HTINVNLVAVIDCTRLAIKSMQALQKPGVIINMGSSAGLYPMYIDPIYSATKGGVVMFTRSLAPYRRQGIRVNVLCPEFVQTEMGEKVGAKYITLLGGYVQMENVVKGAFDLIMDESRAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A0D2TUN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042800 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 3.704e-70 Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HTINVNLVAVIDCTRLAIK+MQALQKPGVIIN GS AGL+P ++DPIYS +KGGVV+FTRSL PY+R+GIRVNVLCPE V+TEMGEK+ KY++L+GG+V ME VVKGAF+LI DESRAGSCLWI+NRRGM YW Sbjct: 92 HTINVNLVAVIDCTRLAIKSMQALQKPGVIINMGSSAGLYPMYIDPIYSATKGGVVMFTRSLAPYRRQGIRVNVLCPEFVQTEMGEKVGAKYITLLGGYVQMENVVKGAFDLIMDESRAGSCLWITNRRGMEYW 225
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A0D2W2Q9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042800 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 4.806e-70 Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HTINVNLVAVIDCTRLAIK+MQALQKPGVIIN GS AGL+P ++DPIYS +KGGVV+FTRSL PY+R+GIRVNVLCPE V+TEMGEK+ KY++L+GG+V ME VVKGAF+LI DESRAGSCLWI+NRRGM YW Sbjct: 121 HTINVNLVAVIDCTRLAIKSMQALQKPGVIINMGSSAGLYPMYIDPIYSATKGGVVMFTRSLAPYRRQGIRVNVLCPEFVQTEMGEKVGAKYITLLGGYVQMENVVKGAFDLIMDESRAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A0D2V929_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042800 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 5.608e-70 Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HTINVNLVAVIDCTRLAIK+MQALQKPGVIIN GS AGL+P ++DPIYS +KGGVV+FTRSL PY+R+GIRVNVLCPE V+TEMGEK+ KY++L+GG+V ME VVKGAF+LI DESRAGSCLWI+NRRGM YW Sbjct: 121 HTINVNLVAVIDCTRLAIKSMQALQKPGVIINMGSSAGLYPMYIDPIYSATKGGVVMFTRSLAPYRRQGIRVNVLCPEFVQTEMGEKVGAKYITLLGGYVQMENVVKGAFDLIMDESRAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: B9HRZ7_POPTR (NADPH oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0009s10580g PE=4 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 5.580e-69 Identity = 102/134 (76.12%), Postives = 120/134 (89.55%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HT+NVNL+AVIDCT LAI +M A QKPGVIIN GS +GL+P + DPIYSGSKGGVV+FTRSL PYKR GIR+NVLCPE V+TEMGEK+D K++ +MGGFVPM++VVKGAFELI+DES+AGSCLWI+NRRGM YW Sbjct: 121 HTVNVNLLAVIDCTHLAINSMLAAQKPGVIINLGSASGLYPMYHDPIYSGSKGGVVMFTRSLVPYKRRGIRINVLCPEFVKTEMGEKIDSKFIDMMGGFVPMKMVVKGAFELISDESKAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A5BP77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003027 PE=3 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 6.706e-69 Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 TINVNLVAVIDCTRLAI+TMQA +KPGVIIN GS +GL+P ++DPIYS SKGGVVLFTRSL PYKR GIRVNVLCPE V+TEMG +D K++ LMGG+V ME+VVKGAFELI+DE +AGSCLWI+NRRGM YW Sbjct: 140 TINVNLVAVIDCTRLAIQTMQAAKKPGVIINMGSASGLYPMYVDPIYSASKGGVVLFTRSLAPYKRHGIRVNVLCPEFVQTEMGSSVDSKFIGLMGGYVSMEMVVKGAFELISDERKAGSCLWITNRRGMEYW 272
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: M5VMI0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002752mg PE=4 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 2.009e-67 Identity = 104/133 (78.20%), Postives = 119/133 (89.47%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 TI+VNL+A+IDCTRLAIKTMQA+QKPGVIIN GS +GL+P + DPIYSGSKGGVV FTRSL PYKR+GIR+NVLCPE V T+MG K+ K+VSLM GFVPME+VVKGAFELITDES+AGSCLWI+ RRGM YW Sbjct: 122 TIDVNLIAIIDCTRLAIKTMQAVQKPGVIINMGSASGLYPLYSDPIYSGSKGGVVQFTRSLVPYKRQGIRINVLCPEFVETDMGSKVGSKFVSLMDGFVPMEMVVKGAFELITDESKAGSCLWITIRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: D7TPK4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00610 PE=4 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 2.058e-67 Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 400 TINVNLVAVIDCTRLAI+TMQA +KPGVIIN GS +GL+P ++DPIYS SKGGVVLFTRSL PYKR GIRVNVLCPE V+TEMG +D K++ LMGG+V ME+VVKGAFELI+DE +AGSCLWI+NRRGM YW Sbjct: 122 TINVNLVAVIDCTRLAIQTMQAAKKPGVIINMGSASGLYPMYVDPIYSASKGGVVLFTRSLAPYKRHGIRVNVLCPEFVQTEMGSSVDSKFIGLMGGYVSMEMVVKGAFELISDERKAGSCLWITNRRGMEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: G7JME3_MEDTR (Alcohol dehydrogenase zinc-binding domain protein OS=Medicago truncatula GN=MTR_4g086410 PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.741e-67 Identity = 101/134 (75.37%), Postives = 120/134 (89.55%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 HT+NVN +AV D TRLAIKTM+AL++PG IIN GS +GL+P +LDPIYSGSKGGVV+FTRSL YKR+GIRVNVLCPE V TE+G K+DPK++S+MGGF+PME+VVKGAFELITDES+AG CLWISNRRG+ YW Sbjct: 121 HTLNVNFIAVFDTTRLAIKTMEALKRPGAIINMGSASGLYPMYLDPIYSGSKGGVVMFTRSLRLYKRKGIRVNVLCPEFVETELGLKVDPKFLSMMGGFIPMEMVVKGAFELITDESKAGHCLWISNRRGLEYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Match: A0A059BCL3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_G014532 PE=3 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 3.808e-66 Identity = 99/134 (73.88%), Postives = 113/134 (84.33%), Query Frame = -1 Query: 2 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMELVVKGAFELITDESRAGSCLWISNRRGMVYW 403 H +NVNLVAVIDCTRLA+K M++ +PGVIIN GS AGL+P + DPIYS SKGGVVLFTRSL P+KR GIRVNVLCPE VRTEM K+D +V LMGGF+PME+VVKGAFELITDES+ GSCLWI+ R GM YW Sbjct: 121 HALNVNLVAVIDCTRLAVKAMESAGRPGVIINVGSAAGLYPTYADPIYSASKGGVVLFTRSLAPFKRRGIRVNVLCPEFVRTEMTLKMDSDFVDLMGGFLPMEMVVKGAFELITDESKGGSCLWITKRNGMQYW 254
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.506e-8 Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = -1 Query: 116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397 +++NLV I ++A+K M Q+ G I+N GS G IY SK G++ F++SL + IRVNV+ P +RT+M L ++ M Sbjct: 103 LSINLVGTIQTCKVALKGM-IQQQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDMTSDLKEDSLNKM 196
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.809e-8 Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = -1 Query: 53 TINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTR----SLTPYKREGIRVNVLCPEVVRTEMGEKL--DPKYVSLM------GGFVPMELVVKGAFELITDES 400 + +VNL AVI +++ + + A PGVI+N S A +Y +KG + T+ L P+K IRVN + P VV T MG+ DP+ M G F +E VV L++D S Sbjct: 103 SFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHK---IRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRS 227
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 3.159e-8 Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -1 Query: 116 INVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP-YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLM 397 ++VNLV I +LA+++M Q+ G I+N GS G IY SK G++ F++SL + IRVNV+ P + T+M L+ ++ M Sbjct: 103 LSVNLVGTIQTCKLALRSM-IQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLGLEEDSLTKM 196
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 3.166e-8 Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = -1 Query: 98 HTINVNLVAVIDCTRLAIKTMQALQKPGVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTPYKREG----IRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPM 403 I +NL V CT+ A+K M +K G IIN S GL Y+ +KGGV+ F+++ REG I VNV+CP + ++M +L + G +P+ Sbjct: 180 EVIALNLTGVFLCTQAAVKIMMK-KKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAA---REGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIPL 281
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Match: ADH1_CERCO (Alcohol dehydrogenase 1 OS=Ceratitis cosyra GN=ADH1 PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 6.227e-8 Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = -1 Query: 2 TINVNLVAVIDCTRLAIKTMQALQKP--GVIINTGSYAGLFPFFLDPIYSGSKGGVVLFTRSLTP---YKREGIRVNVLCPEVVRTEMGEKLDPKYVSLMGGFVPMEL--------VVKGAFELITDESRAGSCLWISNR------RGMVYW 400 T+N+NL+ +I+ T AI M +K GVI+N S GL P IY SK GV+ F+RSL Y+ GI V CP + T + + KY + +L V GA E R ++ISN+ + VYW Sbjct: 102 TMNINLIGLINTTLEAIPLMDKNKKGRGGVIVNIASVLGLEPGPPAAIYCASKFGVMGFSRSLGDPHYYEHTGIAVVTFCPGLTDTPLKNNVATKYTFDYSKEIGEKLNHSKTQKPEVCGAHLAQVIELRDNGAIYISNQGTLTKVKPSVYW 253 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001749 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001749 ID=g.arboreum_cottongen_reftransV1_0001749; Name=g.arboreum_cottongen_reftransV1_0001749; organism=Gossypium arboreum; type=contig; length=403bpback to top |