g.arboreum_cottongen_reftransV1_0008171, g.arboreum_cottongen_reftransV1_0008171 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: D7L9H4_ARALL (Kinase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900118 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.035e-53 Identity = 112/153 (73.20%), Postives = 122/153 (79.74%), Query Frame = -3 Query: 2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460 ST+DKPKLLSQLTSLL ELGLNIQEAHAFSTVDG+SLDVFVVDGW EET LKDAL KEILK K+Q ++ SIS K +P C+EIPTDGTD WEID QLKIE K+ASGSYGDL+RGTY SQEVAIK LKPERV E+LREFS Sbjct: 178 STIDKPKLLSQLTSLLGELGLNIQEAHAFSTVDGFSLDVFVVDGWSQEETDGLKDALSKEILKLKDQPGAKQKSISFFEH-DKSSNELIPACIEIPTDGTDEWEIDVTQLKIEKKVASGSYGDLHRGTYCSQEVAIKFLKPERVNNEMLREFS 329
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A078HUX6_BRANA (BnaC03g62520D protein OS=Brassica napus GN=BnaC03g62520D PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.512e-53 Identity = 111/153 (72.55%), Postives = 124/153 (81.05%), Query Frame = -3 Query: 2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460 ST+DKPKLLSQLT+LL ELGLNIQEAHAFST DG+SLDVFVVDGW EETK LKDAL+KEILK K+Q R+ SI+ K LP CVEIPTDGTD WEID +QLKIE K+A GSYG+LY+GTY SQEVAIK+LKPERV E+LREFS Sbjct: 250 STIDKPKLLSQLTALLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETKGLKDALKKEILKLKDQPSSRQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELYKGTYCSQEVAIKILKPERVNTEMLREFS 401
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: U5GEU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10830g PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.669e-53 Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = -3 Query: 2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAM-----TGL--------VKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460 STVD+PKLLSQLTSLLAE+GLNIQEAHAFSTVDG+SLDVFVVDGW EET+ELK+ALEKEILK+K+Q + S+S + TG+ + + L N V+IP+DGTDVWEID+ QLK+E+K+ASGSYGDLYRGTY SQEVAIKVLKPERV+ E+LREFS Sbjct: 193 STVDRPKLLSQLTSLLAEIGLNIQEAHAFSTVDGFSLDVFVVDGWLCEETEELKNALEKEILKAKDQCFPNQLSVSLVGEQNKTGVKSLLDNVQIPSDGTLLDN-VQIPSDGTDVWEIDTSQLKVENKVASGSYGDLYRGTYCSQEVAIKVLKPERVSAEMLREFS 357
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: Q8RWL6_ARATH (ACT-like protein tyrosine kinase family protein OS=Arabidopsis thaliana GN=At4g35780 PE=1 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.785e-53 Identity = 108/153 (70.59%), Postives = 124/153 (81.05%), Query Frame = -3 Query: 2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460 ST+D+PKLLSQLTS+L ELGLNIQEAHAFST DG+SLDVFVVDGW EET+ LKDAL+KEI K K+Q C ++ SI+ K LP CVEIPTDGTD WEID +QLKIE K+A GSYG+L+RGTY SQEVAIK+LKPERV E+LREFS Sbjct: 184 STIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKDALKKEIRKFKDQPCSKQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELFRGTYCSQEVAIKILKPERVNAEMLREFS 335
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: M4D216_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra010516 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 3.743e-53 Identity = 110/153 (71.90%), Postives = 124/153 (81.05%), Query Frame = -3 Query: 2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460 ST+DKPKLLSQLT+LL ELGLNIQEAHAFST DG+SLDVFVVDGW EET+ LKDAL+KEILK K+Q R+ SI+ K LP CVEIPTDGTD WEID +QLKIE K+A GSYG+LY+GTY SQEVAIK+LKPERV E+LREFS Sbjct: 183 STIDKPKLLSQLTALLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKDALKKEILKLKDQPSSRQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELYKGTYCSQEVAIKILKPERVNTEMLREFS 334 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008171 ID=g.arboreum_cottongen_reftransV1_0008171; Name=g.arboreum_cottongen_reftransV1_0008171; organism=Gossypium arboreum; type=contig; length=462bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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