g.arboreum_cottongen_reftransV1_0008171, g.arboreum_cottongen_reftransV1_0008171 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008171
Unique Nameg.arboreum_cottongen_reftransV1_0008171
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0008171:1..462 .
Chr1:134866698..134868245 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067FVF1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.780e-58
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK+QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067L5J7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22338 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.013e-58
Identity = 109/153 (71.24%), Postives = 131/153 (85.62%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            STVD+PKLLS+LT LLAE+GLNIQEAHAFSTVDGYSLDVFVVDGWP EET+ LK+A++KEI K KE+   ++ SIS++T        SLP+C+EIP DGTDVWEID+ QL IE+K+ASG+YGDLY+GTY SQEVAIK+LKPERV+ E+LREFS
Sbjct:  185 STVDRPKLLSELTFLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPHEETEVLKNAVQKEIQKFKERCLSKQPSISSVTKQNDPGVESLPDCIEIPNDGTDVWEIDTSQLNIENKVASGAYGDLYKGTYCSQEVAIKILKPERVSAEMLREFS 337
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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: M5VWD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003462mg PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.366e-58
Identity = 112/153 (73.20%), Postives = 130/153 (84.97%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            STVDKPKLLSQLTSLLAE+GLNIQEAHAFSTVDG+SLDVFVVDGW +EET+ELK  L+KEI K KEQS  ++  I+A+    +    S P+C+EIPTDGTDVWEID+RQLK E+K+ SGS+GDLYRGTY SQEVAIKVLKPERV  E+LR+FS
Sbjct:  184 STVDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGFSLDVFVVDGWHYEETEELKSVLQKEISKLKEQSWSKQHPIAAIGEDNQTRNESFPDCIEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLKPERVNAEMLRDFS 336
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067FVJ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.713e-57
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK+QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067G7J2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.449e-57
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK+QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067FZ08_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.835e-57
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK+QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067G748_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.866e-57
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK+QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A067FVE7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015868mg PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.345e-54
Identity = 93/138 (67.39%), Postives = 110/138 (79.71%), Query Frame = -3 
Query:    2 NIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSK------EQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 397
            NIQEAHAFSTVDG+SLDVFVVDGWP++ET++LK+ L KEILKSK      +QSC ++     +    K    S PNC+EIPTDGTDVWEID++QLKIE K+ASGSYGDLY+GTY SQEVAIKVLKPE V  E+L+EFS
Sbjct:   24 NIQEAHAFSTVDGFSLDVFVVDGWPYDETEDLKNVLAKEILKSKFLIAMQDQSCSKRQPALGVPMHSKLLIESSPNCIEIPTDGTDVWEIDAKQLKIECKVASGSYGDLYKGTYCSQEVAIKVLKPECVNTEMLKEFS 161
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: R0H6P1_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v100064731mg PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.446e-54
Identity = 109/153 (71.24%), Postives = 123/153 (80.39%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+DKPKLLSQLTS+L ELGLNIQEAHAFST DG+SLDVFVVDGW  EET+ LKDAL KEI K K+Q C ++ SI+      K     LP CVEIPTDGTD WEID +QLKIE K+A GSYG+L+RGTY SQEVAIK+LKPERV  E+LREFS
Sbjct:  205 STIDKPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKDALGKEIRKLKDQPCSKQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELFRGTYCSQEVAIKILKPERVNAEMLREFS 356
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A078GG47_BRANA (BnaA07g02860D protein OS=Brassica napus GN=BnaA07g02860D PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.569e-54
Identity = 110/153 (71.90%), Postives = 123/153 (80.39%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+DKPKLLSQLTSLL+ELGLNIQEAHAFSTVDG+SLDVFVVDGW  EET  LKDAL KEILK K+Q   R+ +IS            +P C+EIPTDGTD WEID +QL+IE K+ASGSYGDL+RGTY SQEVAIK LKPERV  E+LREFS
Sbjct:  178 STIDKPKLLSQLTSLLSELGLNIQEAHAFSTVDGFSLDVFVVDGWSHEETDGLKDALGKEILKLKDQLGSRQKAISFFER-DNSNNYMIPACIEIPTDGTDEWEIDVKQLQIEKKVASGSYGDLHRGTYCSQEVAIKFLKPERVNAEMLREFS 329
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067FVF1_CITSI3.780e-5870.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067L5J7_JATCU5.013e-5871.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5VWD4_PRUPE7.366e-5873.20Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067FVJ4_CITSI1.713e-5770.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067G7J2_CITSI4.449e-5770.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067FZ08_CITSI8.835e-5770.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067G748_CITSI8.866e-5770.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067FVE7_CITSI2.345e-5467.39Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
R0H6P1_9BRAS4.446e-5471.24Uncharacterized protein (Fragment) OS=Capsella rub... [more]
A0A078GG47_BRANA7.569e-5471.90BnaA07g02860D protein OS=Brassica napus GN=BnaA07g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availableGENE3D3.30.200.20coord: 79..140
e-value: 2.8E-12
score: 46.0
NoneNo IPR availablePANTHERPTHR23257SERINE-THREONINE PROTEIN KINASEcoord: 1..142
NoneNo IPR availablePANTHERPTHR23257:SF492SUBFAMILY NOT NAMEDcoord: 1..142
NoneNo IPR availableSUPERFAMILY55021ACT-likecoord: 2..49
IPR002912ACT domainPROSITEPS51671ACTcoord: 1..67
score: 11.082
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 85..141

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008171 ID=g.arboreum_cottongen_reftransV1_0008171; Name=g.arboreum_cottongen_reftransV1_0008171; organism=Gossypium arboreum; type=contig; length=462bp
GAGAAAACTCTCTCAGCAATTCCCCTGTAACCCGCTCAGGCTTGAGGACT
TTAATAGCCACTTCTTGACTATAATATGTGCCTCTGTATAGATCGCCATA
GGACCCAGATGCAATCTTGTGTTCAATTTTGAGCTGCCTGGAATCAATTT
CCCACACATCAGTTCCATCGGTCGGGATTTCAACACAATTGGGTAAAGAA
ACGGCCTCTTCTTTGACAAGCCCGGTCATAGCAGATATTGAACTCTTTCT
CACACAAGATTGCTCCTTAGACTTTAAAATTTCCTTCTCCAGTGCATCTT
TGAGCTCCTTGGTTTCCTCAAAGGGCCAACCATCAACAACAAAAACATCC
AAAGAGTACCCATCAACAGTGGAAAAAGCATGAGCTTCCTGAATGTTCAA
TCCAAGCTCCGCAAGTAAAGAAGTCAACTGACTAAGGAGTTTTGGCTTGT
CAACTGTAGAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002912ACT_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016597amino acid binding