g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW04_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ2_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.261e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW07_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.325e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW06_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.389e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ4_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.389e-39 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLIMRDS+R +E+SG K L Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA AIGKSL +++V EDS+ V +NL+ RA Sbjct: 547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_PICAB (Phytochrome OS=Picea abies PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.474e-30 Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSF D+++S SK + + ND +GI+E+S+V EMVRLIET T P+ +D+ G++NGWN K AELTGL AD IG+ L D V H DS E+ K ++ AL Sbjct: 588 IHSLQLILRDSFHDIDDSDSKTMIHARLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQH-DSVEIVKKMLYLAL 696
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_SELMA (Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.457e-30 Identity = 56/110 (50.91%), Postives = 84/110 (76.36%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SF+D+++S +K + + ND + +G++E+S+VA EMVRLIET TAP+ VD++G INGWNAKVA++TGL A+G+SLA E+V +S ++ + L+ AL Sbjct: 575 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVADVTGLPVTEAMGRSLAKELVLHESADMVERLLYLAL 684
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.465e-28 Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACG----QQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSF++ E SK A G +D +G+ EI +VA EMVRLIET T P+F VD G INGWNAK+AELTGL + A+GKSL E+++++ +E L+ AL Sbjct: 611 IHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLLSCAL 724
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_MOUSC (Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 2.882e-28 Identity = 52/110 (47.27%), Postives = 76/110 (69.09%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SF+D+E+ +++ + + +G+ E+SSVA EMVRLIET TAP+ VDTAG +NGWN K++ELTGL +GKSL ++ H S++ + L+ AL Sbjct: 572 IHSLQLILRGSFQDIEDKEDRKIVHARLKEMHLQGMEELSSVASEMVRLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLYMAL 681
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY2_CERPU (Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.079e-27 Identity = 52/106 (49.06%), Postives = 78/106 (73.58%), Query Frame = -1 Query: 14 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLI 331 IHS+QLI+R SF+D+++S +K + + ND + G++E+S VA EMVRLIET TAP+ VD+ G+INGWNAK+A +TGL A+G+SL ++V ++S V + L+ Sbjct: 567 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKDLVLDESVVVVERLL 672
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_PHYPA (Phytochrome 1 OS=Physcomitrella patens subsp. patens GN=PHY1 PE=2 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 1.529e-27 Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SF+D+++S +K + + ND + ++E+S VA EMVRLIET TAP+ VD+ G+INGWNAK+A++TGL A+G+SL ++V ++S V + L+ AL Sbjct: 569 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIETATAPILAVDSNGMINGWNAKIAQVTGLPVSEAMGRSLVKDLVTDESVAVVERLLYLAL 678
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.660e-27 Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTET----EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+RDSF++ E + + ++ G +GI+E+ +VA EMVRLIET T P+F VD G INGWNAK+AELTGL + A+GKSL ++++++++ L+ RAL Sbjct: 607 IHSLQLILRDSFKESEAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRAL 720
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.845e-26 Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS++LIMR+SF + S+ + G + NE++S EMVR+IET TAP+FGVD++G INGWN K AE+TGL A A+GKSLADE+V E+S+ ++L+ +AL Sbjct: 562 IHSLRLIMRESF-----TSSRPVLSG---NGVARDANELTSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAALESLLCKAL 663
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 9.286e-25 Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESG-SKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R++F+D E + + ++ + ND + +GI E+ +V EMVRLIET T P+ VD+ G++NGWN K+AELTGL D AIGK +V + S E+ K ++ AL Sbjct: 576 IHSLQLILRNAFKDSETTDVNTKVIYSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIGKHFL-TLVEDSSVEIVKRMLENAL 685
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_CERPU (Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 2.040e-23 Identity = 47/110 (42.73%), Postives = 76/110 (69.09%), Query Frame = -1 Query: 2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331 IHS+QLI+R SFRD+ +S +K + + ND + +G+ E +++A EM R++ET AP+ VD+ G+IN WNAK+A++TGL + A+ SL ++V ++S V + L+ AL Sbjct: 568 IHSLQLILRGSFRDIADSDTKTMIHARLNDLKLQGVEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERLLSLAL 677 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bpback to top |