g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018382
Unique Nameg.arboreum_cottongen_reftransV1_0018382
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0018382:1..331 .
Chr9:89763607..89763937 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY4_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.892e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY8_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.952e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ6_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.074e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVX8_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.074e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW01_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY6_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVX9_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW08_9ERIC (Phytochrome E (Fragment) OS=Pieris japonica GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW05_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ9_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.377e-23
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:   38 IHSIQLIMRDSFRDMEESGSKELACGQQ-NDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDS 331
            IHS+QLI+R++F+D +   S  ++   + ND + +G+ E+ +V  EMVRLIET + P+F VD  G +NGWN KVAELTGL  D AIGK L   V  EDS
Sbjct:  575 IHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTLV--EDS 671
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.969e-23
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDME--ESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R++F+D+E  +  +K +   + +D + EG+ E+ +V  EMVRLIET T P+  VD  G++NGWN K++ELTGL  D AIGK L   +V + S ++ K ++  AL
Sbjct:  575 IHSLQLILRNTFKDIETMDVDTKTIH-ARLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDIVKRMLFLAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.162e-22
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDME--ESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R++F+D +  E   K +      D + EG  E+ SV  EMVRLIET T P+  VD  G+INGWN K+AELTGL  D AIGK L   +V + S EV + ++  AL
Sbjct:  574 IHSLQLILRNTFKDTDATEINRKSIQT-TLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDSSVEVVRKMLFLAL 683
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.206e-22
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRD---MEESGSKELACGQQNDTET-EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R S +D    + + +K +     +D +  +G+ E+ +V  EMVRLIET TAP+  VD  G INGWN K AELTGL    AIGK L D V+ +DS EV K ++  AL
Sbjct:  575 IHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSAL 687
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.270e-22
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRD---MEESGSKELACGQQNDTET-EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R S +D    + + +K +     +D +  +G+ E+ +V  EMVRLIET TAP+  VD  G INGWN K AELTGL    AIGK L D V+ +DS EV K ++  AL
Sbjct:  575 IHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSAL 687
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D2KVY4_9ERIC5.892e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY8_9ERIC5.952e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVZ6_9ERIC6.074e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVX8_9ERIC6.074e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KW01_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY6_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVX9_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KW08_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris japonica GN=PHY... [more]
D2KW05_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVZ9_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PHYA_SOLTU8.377e-2350.51Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV... [more]
PHYA_POPTM9.969e-2344.64Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 ... [more]
PHYA_CUCPE1.162e-2248.21Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1[more]
PHYC_ORYSJ2.206e-2247.37Phytochrome C OS=Oryza sativa subsp. japonica GN=P... [more]
PHYC_ORYSI2.270e-2247.37Phytochrome C OS=Oryza sativa subsp. indica GN=PHY... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001294PhytochromePRINTSPR01033PHYTOCHROMEcoord: 57..72
score: 80.13
coord: 38..54
score: 73.15
IPR000014PAS domainSMARTSM00091pas_2coord: 37..103
e-value: 2.8E-5
score: 33.5
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 42..102
e-value: 1.7E-8
score: 32.6
IPR000014PAS domainPROSITEPS50112PAScoord: 35..103
score: 19.02
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 41..101
IPR013767PAS foldPFAMPF00989PAScoord: 38..98
e-value: 3.6E-16
score: 59.0
NoneNo IPR availableGENE3D3.30.450.20coord: 42..96
e-value: 2.8E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR24423TWO-COMPONENT SENSOR HISTIDINE KINASEcoord: 35..103
NoneNo IPR availablePANTHERPTHR24423:SF563PHYTOCHROME Ecoord: 35..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bp
GCAAAGCTCTTCCTATGAGATTTTTGTACACTTCTTGAGAATCTTCGTGA
ACAACTTCATCAGCTAGGGATTTCCCGATTGCATGATCGGCTTGTAAACC
TGTCAATTCTGCAACTTTTGCATTCCAACCATTTATGATACCGGCTGTAT
CAACTCCAAAGACTGGAGCTGTTCCAGTCTCAATCAATCTAACCATTTCA
TATGCCACTGAGCTGATTTCATTGATTCCCTCCGTCTCAGTATCATTTTG
CTGGCCACAAGCTAACTCCTTGGAGCCACTCTCTTCCATGTCTCGAAATG
AATCTCTCATTATTAGCTGTATAGAGTGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001294Phytochrome
IPR000014PAS
IPR013767PAS_fold
Vocabulary: Biological Process
TermDefinition
GO:0009584detection of visible light
GO:0006355regulation of DNA-templated transcription