g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018382
Unique Nameg.arboreum_cottongen_reftransV1_0018382
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0018382:1..331 .
Chr9:89763607..89763937 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0B0NET2_GOSAR (Phytochrome OS=Gossypium arboreum GN=F383_07338 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.472e-66
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL
Sbjct:  573 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0D2UNN6_GOSRA (Phytochrome OS=Gossypium raimondii GN=B456_011G040900 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.115e-63
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DMEESGSKELACGQQNDTETEGINEI SVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDS+EVY+NLIGRAL
Sbjct:  573 IHSLQLIMRDSFQDMEESGSKELACGQQNDTETEGINEIISVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSREVYENLIGRAL 682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GE12_THECC (Phytochrome E isoform 2 OS=Theobroma cacao GN=TCM_029563 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.636e-46
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+ ME+SGSK L   +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV  NL+ RAL
Sbjct:  575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GL48_THECC (Phytochrome OS=Theobroma cacao GN=TCM_029563 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.183e-46
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+ ME+SGSK L   +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV  NL+ RAL
Sbjct:  575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: B9S180_RICCO (Phytochrome OS=Ricinus communis GN=RCOM_0634650 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.319e-42
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DME+S SK +   QQ DT+ +GI+E+SSVA EMVRLIET TAP+FGVD+AG +NGWNAK+AELTGLQA  A+GKSL  EVVH+DS E  ++L+ RAL
Sbjct:  570 IHSLQLIMRDSFQDMEDSASKAMVNAQQTDTDVQGIDELSSVACEMVRLIETATAPIFGVDSAGSVNGWNAKIAELTGLQASEAMGKSLVREVVHKDSYEFVESLLCRAL 679
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A067JEN0_JATCU (Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.453e-41
Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DME+SGSK +   ++ D E +GI+E+SSVA EMVRLIET TAP+FGVD+AG+INGWN+KVAELTGLQ   A+GKSL  E+VHEDS+ V ++L+ RAL
Sbjct:  570 IHSLQLIMRDSFQDMEDSGSKAIVYDRRTDIEMQGIDELSSVACEMVRLIETATAPIFGVDSAGLINGWNSKVAELTGLQTSAAMGKSLVHEIVHEDSRGVVESLLCRAL 679
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: F6HMG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02680 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.225e-39
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+D+E+S  K +   Q+ D+E +G+NE+ SVA EMV+LIET TAP+FGVD++G INGWNAK+AELTGLQA  A+GKSL DE+VHED +    NL+ RAL
Sbjct:  500 IHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRAL 609
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY3_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.716e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY1_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.774e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY5_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.833e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.377e-23
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:   38 IHSIQLIMRDSFRDMEESGSKELACGQQ-NDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDS 331
            IHS+QLI+R++F+D +   S  ++   + ND + +G+ E+ +V  EMVRLIET + P+F VD  G +NGWN KVAELTGL  D AIGK L   V  EDS
Sbjct:  575 IHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTLV--EDS 671
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.969e-23
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDME--ESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R++F+D+E  +  +K +   + +D + EG+ E+ +V  EMVRLIET T P+  VD  G++NGWN K++ELTGL  D AIGK L   +V + S ++ K ++  AL
Sbjct:  575 IHSLQLILRNTFKDIETMDVDTKTIH-ARLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDIVKRMLFLAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.162e-22
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDME--ESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R++F+D +  E   K +      D + EG  E+ SV  EMVRLIET T P+  VD  G+INGWN K+AELTGL  D AIGK L   +V + S EV + ++  AL
Sbjct:  574 IHSLQLILRNTFKDTDATEINRKSIQT-TLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDSSVEVVRKMLFLAL 683
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.206e-22
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRD---MEESGSKELACGQQNDTET-EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R S +D    + + +K +     +D +  +G+ E+ +V  EMVRLIET TAP+  VD  G INGWN K AELTGL    AIGK L D V+ +DS EV K ++  AL
Sbjct:  575 IHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSAL 687
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.270e-22
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRD---MEESGSKELACGQQNDTET-EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R S +D    + + +K +     +D +  +G+ E+ +V  EMVRLIET TAP+  VD  G INGWN K AELTGL    AIGK L D V+ +DS EV K ++  AL
Sbjct:  575 IHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSAL 687
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NET2_GOSAR2.472e-66100.00Phytochrome OS=Gossypium arboreum GN=F383_07338 PE... [more]
A0A0D2UNN6_GOSRA5.115e-6395.45Phytochrome OS=Gossypium raimondii GN=B456_011G040... [more]
A0A061GE12_THECC1.636e-4672.73Phytochrome E isoform 2 OS=Theobroma cacao GN=TCM_... [more]
A0A061GL48_THECC6.183e-4672.73Phytochrome OS=Theobroma cacao GN=TCM_029563 PE=3 ... [more]
B9S180_RICCO3.319e-4268.18Phytochrome OS=Ricinus communis GN=RCOM_0634650 PE... [more]
A0A067JEN0_JATCU2.453e-4167.27Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 ... [more]
F6HMG7_VITVI5.225e-3963.64Putative uncharacterized protein OS=Vitis vinifera... [more]
D2KVY3_9ERIC5.716e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY1_9ERIC5.774e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY5_9ERIC5.833e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PHYA_SOLTU8.377e-2350.51Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV... [more]
PHYA_POPTM9.969e-2344.64Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 ... [more]
PHYA_CUCPE1.162e-2248.21Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1[more]
PHYC_ORYSJ2.206e-2247.37Phytochrome C OS=Oryza sativa subsp. japonica GN=P... [more]
PHYC_ORYSI2.270e-2247.37Phytochrome C OS=Oryza sativa subsp. indica GN=PHY... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001294PhytochromePRINTSPR01033PHYTOCHROMEcoord: 57..72
score: 80.13
coord: 38..54
score: 73.15
IPR000014PAS domainSMARTSM00091pas_2coord: 37..103
e-value: 2.8E-5
score: 33.5
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 42..102
e-value: 1.7E-8
score: 32.6
IPR000014PAS domainPROSITEPS50112PAScoord: 35..103
score: 19.02
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 41..101
IPR013767PAS foldPFAMPF00989PAScoord: 38..98
e-value: 3.6E-16
score: 59.0
NoneNo IPR availableGENE3D3.30.450.20coord: 42..96
e-value: 2.8E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR24423TWO-COMPONENT SENSOR HISTIDINE KINASEcoord: 35..103
NoneNo IPR availablePANTHERPTHR24423:SF563PHYTOCHROME Ecoord: 35..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bp
GCAAAGCTCTTCCTATGAGATTTTTGTACACTTCTTGAGAATCTTCGTGA
ACAACTTCATCAGCTAGGGATTTCCCGATTGCATGATCGGCTTGTAAACC
TGTCAATTCTGCAACTTTTGCATTCCAACCATTTATGATACCGGCTGTAT
CAACTCCAAAGACTGGAGCTGTTCCAGTCTCAATCAATCTAACCATTTCA
TATGCCACTGAGCTGATTTCATTGATTCCCTCCGTCTCAGTATCATTTTG
CTGGCCACAAGCTAACTCCTTGGAGCCACTCTCTTCCATGTCTCGAAATG
AATCTCTCATTATTAGCTGTATAGAGTGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001294Phytochrome
IPR000014PAS
IPR013767PAS_fold
Vocabulary: Biological Process
TermDefinition
GO:0009584detection of visible light
GO:0006355regulation of DNA-templated transcription