g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018382
Unique Nameg.arboreum_cottongen_reftransV1_0018382
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0018382:1..331 .
Chr9:89763607..89763937 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0B0NET2_GOSAR (Phytochrome OS=Gossypium arboreum GN=F383_07338 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.472e-66
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL
Sbjct:  573 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A0D2UNN6_GOSRA (Phytochrome OS=Gossypium raimondii GN=B456_011G040900 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.115e-63
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DMEESGSKELACGQQNDTETEGINEI SVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDS+EVY+NLIGRAL
Sbjct:  573 IHSLQLIMRDSFQDMEESGSKELACGQQNDTETEGINEIISVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSREVYENLIGRAL 682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GE12_THECC (Phytochrome E isoform 2 OS=Theobroma cacao GN=TCM_029563 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.636e-46
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+ ME+SGSK L   +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV  NL+ RAL
Sbjct:  575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A061GL48_THECC (Phytochrome OS=Theobroma cacao GN=TCM_029563 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.183e-46
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+ ME+SGSK L   +QNDTE +G+ E+SSV YEMVRLIET TAP+FGV+TAG+INGWNAK+AELTGLQAD A+G+SL +EVVHEDS EV  NL+ RAL
Sbjct:  575 IHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLIETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRRAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: B9S180_RICCO (Phytochrome OS=Ricinus communis GN=RCOM_0634650 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.319e-42
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DME+S SK +   QQ DT+ +GI+E+SSVA EMVRLIET TAP+FGVD+AG +NGWNAK+AELTGLQA  A+GKSL  EVVH+DS E  ++L+ RAL
Sbjct:  570 IHSLQLIMRDSFQDMEDSASKAMVNAQQTDTDVQGIDELSSVACEMVRLIETATAPIFGVDSAGSVNGWNAKIAELTGLQASEAMGKSLVREVVHKDSYEFVESLLCRAL 679
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: A0A067JEN0_JATCU (Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.453e-41
Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+DME+SGSK +   ++ D E +GI+E+SSVA EMVRLIET TAP+FGVD+AG+INGWN+KVAELTGLQ   A+GKSL  E+VHEDS+ V ++L+ RAL
Sbjct:  570 IHSLQLIMRDSFQDMEDSGSKAIVYDRRTDIEMQGIDELSSVACEMVRLIETATAPIFGVDSAGLINGWNSKVAELTGLQTSAAMGKSLVHEIVHEDSRGVVESLLCRAL 679
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: F6HMG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02680 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.225e-39
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDSF+D+E+S  K +   Q+ D+E +G+NE+ SVA EMV+LIET TAP+FGVD++G INGWNAK+AELTGLQA  A+GKSL DE+VHED +    NL+ RAL
Sbjct:  500 IHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRAL 609
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY3_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.716e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY1_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.774e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY5_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.833e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_PICAB (Phytochrome OS=Picea abies PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.474e-30
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSF D+++S SK +   + ND   +GI+E+S+V  EMVRLIET T P+  +D+ G++NGWN K AELTGL AD  IG+ L D V H DS E+ K ++  AL
Sbjct:  588 IHSLQLILRDSFHDIDDSDSKTMIHARLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQH-DSVEIVKKMLYLAL 696
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_SELMA (Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.457e-30
Identity = 56/110 (50.91%), Postives = 84/110 (76.36%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SF+D+++S +K +   + ND + +G++E+S+VA EMVRLIET TAP+  VD++G INGWNAKVA++TGL    A+G+SLA E+V  +S ++ + L+  AL
Sbjct:  575 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVADVTGLPVTEAMGRSLAKELVLHESADMVERLLYLAL 684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.465e-28
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACG----QQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSF++ E   SK  A G      +D   +G+ EI +VA EMVRLIET T P+F VD  G INGWNAK+AELTGL  + A+GKSL  E+++++ +E    L+  AL
Sbjct:  611 IHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLLSCAL 724
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_MOUSC (Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.882e-28
Identity = 52/110 (47.27%), Postives = 76/110 (69.09%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SF+D+E+   +++   +  +   +G+ E+SSVA EMVRLIET TAP+  VDTAG +NGWN K++ELTGL     +GKSL  ++ H  S++  + L+  AL
Sbjct:  572 IHSLQLILRGSFQDIEDKEDRKIVHARLKEMHLQGMEELSSVASEMVRLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLYMAL 681
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY2_CERPU (Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.079e-27
Identity = 52/106 (49.06%), Postives = 78/106 (73.58%), Query Frame = -1 
Query:   14 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLI 331
            IHS+QLI+R SF+D+++S +K +   + ND +  G++E+S VA EMVRLIET TAP+  VD+ G+INGWNAK+A +TGL    A+G+SL  ++V ++S  V + L+
Sbjct:  567 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKDLVLDESVVVVERLL 672
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_PHYPA (Phytochrome 1 OS=Physcomitrella patens subsp. patens GN=PHY1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.529e-27
Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SF+D+++S +K +   + ND +   ++E+S VA EMVRLIET TAP+  VD+ G+INGWNAK+A++TGL    A+G+SL  ++V ++S  V + L+  AL
Sbjct:  569 IHSLQLILRGSFQDIDDSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIETATAPILAVDSNGMINGWNAKIAQVTGLPVSEAMGRSLVKDLVTDESVAVVERLLYLAL 678
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.660e-27
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTET----EGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSF++ E + + ++  G           +GI+E+ +VA EMVRLIET T P+F VD  G INGWNAK+AELTGL  + A+GKSL  ++++++++     L+ RAL
Sbjct:  607 IHSLQLILRDSFKESEAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRAL 720
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.845e-26
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS++LIMR+SF     + S+ +  G   +      NE++S   EMVR+IET TAP+FGVD++G INGWN K AE+TGL A  A+GKSLADE+V E+S+   ++L+ +AL
Sbjct:  562 IHSLRLIMRESF-----TSSRPVLSG---NGVARDANELTSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAALESLLCKAL 663
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.286e-25
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESG-SKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R++F+D E +  + ++   + ND + +GI E+ +V  EMVRLIET T P+  VD+ G++NGWN K+AELTGL  D AIGK     +V + S E+ K ++  AL
Sbjct:  576 IHSLQLILRNAFKDSETTDVNTKVIYSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIGKHFL-TLVEDSSVEIVKRMLENAL 685
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY1_CERPU (Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.040e-23
Identity = 47/110 (42.73%), Postives = 76/110 (69.09%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SFRD+ +S +K +   + ND + +G+ E +++A EM R++ET  AP+  VD+ G+IN WNAK+A++TGL  + A+  SL  ++V ++S  V + L+  AL
Sbjct:  568 IHSLQLILRGSFRDIADSDTKTMIHARLNDLKLQGVEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERLLSLAL 677
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NET2_GOSAR2.472e-66100.00Phytochrome OS=Gossypium arboreum GN=F383_07338 PE... [more]
A0A0D2UNN6_GOSRA5.115e-6395.45Phytochrome OS=Gossypium raimondii GN=B456_011G040... [more]
A0A061GE12_THECC1.636e-4672.73Phytochrome E isoform 2 OS=Theobroma cacao GN=TCM_... [more]
A0A061GL48_THECC6.183e-4672.73Phytochrome OS=Theobroma cacao GN=TCM_029563 PE=3 ... [more]
B9S180_RICCO3.319e-4268.18Phytochrome OS=Ricinus communis GN=RCOM_0634650 PE... [more]
A0A067JEN0_JATCU2.453e-4167.27Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 ... [more]
F6HMG7_VITVI5.225e-3963.64Putative uncharacterized protein OS=Vitis vinifera... [more]
D2KVY3_9ERIC5.716e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY1_9ERIC5.774e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY5_9ERIC5.833e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PHY_PICAB1.474e-3052.73Phytochrome OS=Picea abies PE=2 SV=1[more]
PHY1_SELMA2.457e-3050.91Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=... [more]
PHYD_ARATH1.465e-2850.88Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1... [more]
PHY_MOUSC2.882e-2847.27Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2[more]
PHY2_CERPU1.079e-2749.06Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 ... [more]
PHY1_PHYPA1.529e-2748.18Phytochrome 1 OS=Physcomitrella patens subsp. pate... [more]
PHYB_ARATH2.660e-2746.49Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1... [more]
PHYE_ARATH1.845e-2650.00Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1... [more]
PHYA_ARATH9.286e-2545.95Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1... [more]
PHY1_CERPU2.040e-2342.73Light-sensor Protein kinase OS=Ceratodon purpureus... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001294PhytochromePRINTSPR01033PHYTOCHROMEcoord: 57..72
score: 80.13
coord: 38..54
score: 73.15
IPR000014PAS domainSMARTSM00091pas_2coord: 37..103
e-value: 2.8E-5
score: 33.5
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 42..102
e-value: 1.7E-8
score: 32.6
IPR000014PAS domainPROSITEPS50112PAScoord: 35..103
score: 19.02
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 41..101
IPR013767PAS foldPFAMPF00989PAScoord: 38..98
e-value: 3.6E-16
score: 59.0
NoneNo IPR availableGENE3D3.30.450.20coord: 42..96
e-value: 2.8E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR24423TWO-COMPONENT SENSOR HISTIDINE KINASEcoord: 35..103
NoneNo IPR availablePANTHERPTHR24423:SF563PHYTOCHROME Ecoord: 35..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bp
GCAAAGCTCTTCCTATGAGATTTTTGTACACTTCTTGAGAATCTTCGTGA
ACAACTTCATCAGCTAGGGATTTCCCGATTGCATGATCGGCTTGTAAACC
TGTCAATTCTGCAACTTTTGCATTCCAACCATTTATGATACCGGCTGTAT
CAACTCCAAAGACTGGAGCTGTTCCAGTCTCAATCAATCTAACCATTTCA
TATGCCACTGAGCTGATTTCATTGATTCCCTCCGTCTCAGTATCATTTTG
CTGGCCACAAGCTAACTCCTTGGAGCCACTCTCTTCCATGTCTCGAAATG
AATCTCTCATTATTAGCTGTATAGAGTGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001294Phytochrome
IPR000014PAS
IPR013767PAS_fold
Vocabulary: Biological Process
TermDefinition
GO:0009584detection of visible light
GO:0006355regulation of DNA-templated transcription