g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D9VAA7_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 285/409 (69.68%), Postives = 337/409 (82.40%), Query Frame = -2 Query: 383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y+LL G +C RC WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L R + ++ + C S +S +H+ + + +P+KV+IFSQFLEHIHVIEQQLT AGI +AGMYSPM G+K SLA F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD+DACR+ + + + + +EG+RP R+LHDFAES+YLA+L FV + S Sbjct: 909 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSEEYQSIRYSLLNGASCFRCRYWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGNRYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRNL-------RAESMKHGYSRSMSNGACFSGQSSCQ-----DHNNVESTLPHTMPDKVIIFSQFLEHIHVIEQQLTIAGITYAGMYSPMPLGSKRSSLAKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSDACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAKLGFVQKGS 1305
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0A9MUM4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 286/405 (70.62%), Postives = 327/405 (80.74%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD LV+ GLDP SEEY I+Y L G +C RC WCRLP++TPCRHLLCL+CV LDS+ CTLPGCG+ YEMQ+PETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKVAYL+E+L+ L+E S + A H C S H++L +KV+IFSQFLEHIHVI+QQLT AGI +AGMYSPM G+K +L FQ D +CMALLMDG+AALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM++ LQD++ACRK + + + + +EG R R+LHDFAES+YLA+LSFV Sbjct: 679 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRATTIKNVRLSCCVAGHIKVAEAGQDIQETMDALVQKGLDPSSEEYQLIRYALFNGADCVRCKNWCRLPVITPCRHLLCLNCVALDSEKCTLPGCGNHYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVAYLVEKLRTLRETGLNHGNSTYIANGAGHASAPSCQS------------HTKL---------DKVIIFSQFLEHIHVIQQQLTIAGITYAGMYSPMPLGSKRSALMKFQDDPTCMALLMDGTAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMCGTIEEQMLKLLQDSNACRKMVNKGTSSTDNEGGRSHRSLHDFAESSYLAKLSFV 1062
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: J3L7W7_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G53230 PE=4 SV=1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 284/405 (70.12%), Postives = 334/405 (82.47%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NEL VT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y LL G +C RC +WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L+ N + CS + ++ A + C N RL + +P+KV+IFSQFLEHIHVIEQQLT +GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV Sbjct: 899 NELAVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQQGLDPSSEEYQSIRYALLNGASCFRCRDWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGKHYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRGLRAENIKHGCSSNRNNGACLSSQSSCQDH----------NKGRLPHP----MPDKVIIFSQFLEHIHVIEQQLTISGITYAGMYSPMPLGSKRSSLMKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSGTDNEGARPHRSLHDFAESSYLAQLSFV 1289
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B2QMB3_GLYSO (F-box protein OS=Glycine soja GN=glysoja_024809 PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 289/416 (69.47%), Postives = 336/416 (80.77%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQ-------DDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKF-LKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELV+TVRRNILMADWNDPSH+ESLLNPKQWKFRS T++NVRLSCCVAGHIKVT AGEDIQETMD+LV++GLDP S EY ++YNLLYGG+C RC EWCRLP++TPCRHLLCLDCV +D+ CT PGC LYEMQ+ E ARPENP PKWPVPKDLIELQPSYKQ D+W+PDWQSTSSSKV+YL++RLKAL+ N+E + + ++ HI+ L RSD + + + + PEKVLIFSQFLEHIH IEQQLT AGIK+ GMYSPMHS NK KSLAMFQ+D +CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGA+RPI+VETLAMRGTIEEQM++FLQDAD R+ +K+ ++ G R R+LHDFAES+YL +L V+ N Sbjct: 896 NELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRE--ARPENPKPKWPVPKDLIELQPSYKQAWLMENSDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSL---HRSDDKSS--IQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTN 1304
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0E0JTP3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 284/411 (69.10%), Postives = 338/411 (82.24%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP S EY I+Y LL G +C RC +WCRLP+VTPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPET ARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+ +L++L+ N + S + ++ A CPS +S +H+ + +P+KV+IFSQFLEHIHVIEQQLT GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV + V+ Sbjct: 897 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSGEYQSIRYALLNGASCFRCRDWCRLPVVTPCRHLLCLDCVALDSEKCTLPGCGNHYEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVNKLRSLKAENLKHGYSRNMNNGA-------CPSSQSSCQ-----DHNNVEGRLRHTMPDKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAQLSFVKGSDVA 1295
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: FB304_ARATH (F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1) HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0 Identity = 285/408 (69.85%), Postives = 326/408 (79.90%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELV TVRRNIL+ADWNDPSHVESLLN KQWKFRS TI NVRLSCCVAGHIK+T+AG DI+ETMD L+EN LD +EEY+FI+ +L+ G NC+RC EWCRLP++TPCRHLLCLDCV LDS+ CT+ GCG+LYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKV+YL++RL+ L E NK+ S ++ D D P S+ + L+ G++ + +KVLIFSQFLEHIHVIEQQLT AGIKF MYSPM S NKMK+LAMFQ D CMALLMDGS ALGLDLSFVTHVFLMEPIWD+S+EEQVISRAHRMGA RPI VETL MRGTIEEQMM FL+DA+ + L + + E +R RTLHD ESNYL+ LSFV + Sbjct: 957 NELVETVRRNILLADWNDPSHVESLLNSKQWKFRSITISNVRLSCCVAGHIKMTDAGHDIKETMDALLENDLDLWTEEYSFIQDSLIGGCNCKRCGEWCRLPVITPCRHLLCLDCVALDSERCTISGCGYLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVSYLVDRLRKLHEGNKKSILSFNKTDNDNLEDN---PPGTSEAFLGKELHGQDCGSQ--MVFVDKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMRFLEDAEKSDRLLSGDYIEAKQETTRSRRTLHDLVESNYLSHLSFVRSD 1359
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad8 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.547e-15 Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = -2 Query: 527 PEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 886 PEKV+IFSQF + +I L + +A M + +L F+ D L++ A +GL+L+ HVF+M+P W S+E Q I R HR+G +P+ V +R T+EE+M++ Sbjct: 981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKI 1101
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.882e-15 Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = -2 Query: 488 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSA-ALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKE 883 EK+L++SQF +++ ++ L I+ M + + KSL F D + +L+ A ++GL+L+ HV L EP ++ S+E+Q I R HR+G +P+ V + TIEE+++ + R+ +KE Sbjct: 742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKK---RQLVKE 871
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNB (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.003e-15 Identity = 39/127 (30.71%), Postives = 72/127 (56.69%), Query Frame = -2 Query: 509 KVLIFSQFLEHIHVIEQQLTFAGIK---FAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADA 880 K L+FSQF + +IE LT GI+ F G S N ++ + ++ + L+ + +GL+L+ +VFLM+ W+ ++E+Q I R HR+G +P++V ++GT+E+++M+ + A Sbjct: 1037 KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGR-KTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTA 1162
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNJ (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.637e-15 Identity = 39/127 (30.71%), Postives = 72/127 (56.69%), Query Frame = -2 Query: 509 KVLIFSQFLEHIHVIEQQLTFAGIK---FAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADA 880 K L+FSQF + +IE LT GI+ F G S N ++ + ++ + L+ + +GL+L+ +VFLM+ W+ ++E+Q I R HR+G +P++V ++GT+E+++M+ + A Sbjct: 1037 KALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGR-KTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTA 1162
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.607e-14 Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = -2 Query: 518 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQD 883 +K+LIFSQF+ + + GIK+ + + + ++L F+ D + LL+ A +GL+L+ HV +++P W+ +EEQ + RAHR+G +P+++ + TIEE+++ LQD Sbjct: 884 DKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLA-LQD 1005
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_DEBHA (DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.707e-14 Identity = 62/265 (23.40%), Postives = 117/265 (44.15%), Query Frame = -2 Query: 527 VTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLT------FAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 1300 +TPC H CL+CV H ++ Q + +P PN + P+ K K+ L R +++E+ + M++ + +L ++ + L+NH ++ E E+V++FSQF ++ +IE +L F KF G + +++ + ++++ M LL+ A +GL+L+ + F+M+P W S+E+Q I R HR+G + V M +IE +M++ Sbjct: 931 LTPCGHAYCLNCV-----------LEH-FDFQEKNS-QKPLCPNCREPISK-----------------------YKIFKLRHRDTSVKEIRFHTKQEMEDPSQNFKFQLYLYDPTKTSSKIQCLINHLKILKEQSP--NEQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKI 1157
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_YEAST (DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD5 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.168e-13 Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = -2 Query: 533 EKVLIFSQFLEHIHVIEQQLT------FAGI-KFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMM 883 E+V+IFSQF ++ ++E++LT A I KF G S + + A+ Y + LL + +GL+L+ +H ++M+P W SME+Q I R HR+G T + V ++ +IEE+M+ Sbjct: 1013 EQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKML 1136
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: YBMA_SCHPO (Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC582.10c PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.446e-13 Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = -2 Query: 527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880 K +IFSQF + +I+ L AGI F M++ + KSL + + D LL ALGL+L+ + V L + W+ ++EEQ I R HR+G R + V L + TIEE+++E Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVEL 790
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CANAL (DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD5 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.970e-13 Identity = 83/355 (23.38%), Postives = 144/355 (40.56%), Query Frame = -2 Query: 527 TTIRNVRLSCC----VAG------HIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYG-----GNCQRCNEWCRLP----IVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSR-LGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAG-----IKFAGMYSPMHSGNKMKSLAMFQ--YDDSCMALLMDG--SAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 1504 T I +R CC + G I E ED+++ + + EN + ++ K LYG C C + +P +VTPC H CL C+ HL + Q K++ P+ +S S Y + R++ E+R +D +L RS + L+ H + L ++S KV++FSQF ++ +I+ +L A KF G ++ ++ K L F +D +A+L+ + +GL+L+ + ++M+P W S+E+Q I R HR+G + V M +IE +M++ Sbjct: 745 THILRLRQVCCHVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMYNLYGKIKEENECSICTQ-VPIPYSEMVVTPCAHTFCLSCI-----------LEHL--------------------------DFQKELKKEKLCPNCRSPISK---YQLFRIRNQPTKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVRHLKALHSQSPN---SKVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGR---LNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETKMLKI 1052 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bpback to top |