g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D9VAA7_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 285/409 (69.68%), Postives = 337/409 (82.40%), Query Frame = -2 Query: 383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y+LL G +C RC WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L R + ++ + C S +S +H+ + + +P+KV+IFSQFLEHIHVIEQQLT AGI +AGMYSPM G+K SLA F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD+DACR+ + + + + +EG+RP R+LHDFAES+YLA+L FV + S Sbjct: 909 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSEEYQSIRYSLLNGASCFRCRYWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGNRYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRNL-------RAESMKHGYSRSMSNGACFSGQSSCQ-----DHNNVESTLPHTMPDKVIIFSQFLEHIHVIEQQLTIAGITYAGMYSPMPLGSKRSSLAKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSDACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAKLGFVQKGS 1305
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0A9MUM4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 286/405 (70.62%), Postives = 327/405 (80.74%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD LV+ GLDP SEEY I+Y L G +C RC WCRLP++TPCRHLLCL+CV LDS+ CTLPGCG+ YEMQ+PETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKVAYL+E+L+ L+E S + A H C S H++L +KV+IFSQFLEHIHVI+QQLT AGI +AGMYSPM G+K +L FQ D +CMALLMDG+AALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM++ LQD++ACRK + + + + +EG R R+LHDFAES+YLA+LSFV Sbjct: 679 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRATTIKNVRLSCCVAGHIKVAEAGQDIQETMDALVQKGLDPSSEEYQLIRYALFNGADCVRCKNWCRLPVITPCRHLLCLNCVALDSEKCTLPGCGNHYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVAYLVEKLRTLRETGLNHGNSTYIANGAGHASAPSCQS------------HTKL---------DKVIIFSQFLEHIHVIQQQLTIAGITYAGMYSPMPLGSKRSALMKFQDDPTCMALLMDGTAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMCGTIEEQMLKLLQDSNACRKMVNKGTSSTDNEGGRSHRSLHDFAESSYLAKLSFV 1062
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: J3L7W7_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G53230 PE=4 SV=1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 284/405 (70.12%), Postives = 334/405 (82.47%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NEL VT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y LL G +C RC +WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L+ N + CS + ++ A + C N RL + +P+KV+IFSQFLEHIHVIEQQLT +GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV Sbjct: 899 NELAVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQQGLDPSSEEYQSIRYALLNGASCFRCRDWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGKHYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRGLRAENIKHGCSSNRNNGACLSSQSSCQDH----------NKGRLPHP----MPDKVIIFSQFLEHIHVIEQQLTISGITYAGMYSPMPLGSKRSSLMKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSGTDNEGARPHRSLHDFAESSYLAQLSFV 1289
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B2QMB3_GLYSO (F-box protein OS=Glycine soja GN=glysoja_024809 PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 289/416 (69.47%), Postives = 336/416 (80.77%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQ-------DDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKF-LKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELV+TVRRNILMADWNDPSH+ESLLNPKQWKFRS T++NVRLSCCVAGHIKVT AGEDIQETMD+LV++GLDP S EY ++YNLLYGG+C RC EWCRLP++TPCRHLLCLDCV +D+ CT PGC LYEMQ+ E ARPENP PKWPVPKDLIELQPSYKQ D+W+PDWQSTSSSKV+YL++RLKAL+ N+E + + ++ HI+ L RSD + + + + PEKVLIFSQFLEHIH IEQQLT AGIK+ GMYSPMHS NK KSLAMFQ+D +CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGA+RPI+VETLAMRGTIEEQM++FLQDAD R+ +K+ ++ G R R+LHDFAES+YL +L V+ N Sbjct: 896 NELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRE--ARPENPKPKWPVPKDLIELQPSYKQAWLMENSDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSL---HRSDDKSS--IQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTN 1304
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0E0JTP3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 284/411 (69.10%), Postives = 338/411 (82.24%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP S EY I+Y LL G +C RC +WCRLP+VTPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPET ARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+ +L++L+ N + S + ++ A CPS +S +H+ + +P+KV+IFSQFLEHIHVIEQQLT GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV + V+ Sbjct: 897 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSGEYQSIRYALLNGASCFRCRDWCRLPVVTPCRHLLCLDCVALDSEKCTLPGCGNHYEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVNKLRSLKAENLKHGYSRNMNNGA-------CPSSQSSCQ-----DHNNVEGRLRHTMPDKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAQLSFVKGSDVA 1295
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.669e-10 Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = -2 Query: 476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880 +VL++ Q I ++E+ LT+ K+ + ++ ++A FQ D + L+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L GTIEE++ + R KEE QR Sbjct: 1417 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERIRK--------RALQKEEVQR 1544
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 1.915e-10 Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = -2 Query: 509 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADA 880 K ++FSQF + +I +L AG + M + ++ F D + L+ A + L+L+ + VF+M+P W+ +++ Q + R HR+G RPI V TL + +IE +++E LQ+ A Sbjct: 710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIE-LQEKKA 833
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.510e-10 Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2 Query: 476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880 +VL++ Q I ++E+ LT+ K+ + ++ ++A FQ L+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L RGTIEE++ + R KEE QR Sbjct: 1437 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1564
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.223e-10 Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2 Query: 476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880 +VL++ Q I ++E+ LT+ K+ + ++ ++A FQ L+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L RGTIEE++ + R KEE QR Sbjct: 1436 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1563
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.279e-10 Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2 Query: 476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880 +VL++ Q I ++E+ LT+ K+ + ++ ++A FQ L+ A LG++L+ V + W+ +++ Q + RAHR+G TR + V L RGTIEE++ + R KEE QR Sbjct: 1436 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1563 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bpback to top |