g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010658
Unique Nameg.arboreum_cottongen_reftransV1_0010658
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0010658:1..1610 .
Chr12:93308985..93312066 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D9VAA7_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 285/409 (69.68%), Postives = 337/409 (82.40%), Query Frame = -2
Query:  383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609
            NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY  I+Y+LL G +C RC  WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L       R    +   ++ +    C S +S        +H+ + +     +P+KV+IFSQFLEHIHVIEQQLT AGI +AGMYSPM  G+K  SLA F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD+DACR+ + + +  + +EG+RP R+LHDFAES+YLA+L FV + S
Sbjct:  909 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSEEYQSIRYSLLNGASCFRCRYWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGNRYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRNL-------RAESMKHGYSRSMSNGACFSGQSSCQ-----DHNNVESTLPHTMPDKVIIFSQFLEHIHVIEQQLTIAGITYAGMYSPMPLGSKRSSLAKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSDACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAKLGFVQKGS 1305          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0A9MUM4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 286/405 (70.62%), Postives = 327/405 (80.74%), Query Frame = -2
Query:  395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609
            NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD LV+ GLDP SEEY  I+Y L  G +C RC  WCRLP++TPCRHLLCL+CV LDS+ CTLPGCG+ YEMQ+PETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKVAYL+E+L+ L+E       S    + A H     C S            H++L         +KV+IFSQFLEHIHVI+QQLT AGI +AGMYSPM  G+K  +L  FQ D +CMALLMDG+AALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM++ LQD++ACRK + + +  + +EG R  R+LHDFAES+YLA+LSFV
Sbjct:  679 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRATTIKNVRLSCCVAGHIKVAEAGQDIQETMDALVQKGLDPSSEEYQLIRYALFNGADCVRCKNWCRLPVITPCRHLLCLNCVALDSEKCTLPGCGNHYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVAYLVEKLRTLRETGLNHGNSTYIANGAGHASAPSCQS------------HTKL---------DKVIIFSQFLEHIHVIQQQLTIAGITYAGMYSPMPLGSKRSALMKFQDDPTCMALLMDGTAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMCGTIEEQMLKLLQDSNACRKMVNKGTSSTDNEGGRSHRSLHDFAESSYLAKLSFV 1062          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: J3L7W7_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G53230 PE=4 SV=1)

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 284/405 (70.12%), Postives = 334/405 (82.47%), Query Frame = -2
Query:  395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609
            NEL VT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY  I+Y LL G +C RC +WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG  YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L+  N +  CS + ++ A    +  C             N  RL +     +P+KV+IFSQFLEHIHVIEQQLT +GI +AGMYSPM  G+K  SL  F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + +  + +EG+RP R+LHDFAES+YLA+LSFV
Sbjct:  899 NELAVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQQGLDPSSEEYQSIRYALLNGASCFRCRDWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGKHYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRGLRAENIKHGCSSNRNNGACLSSQSSCQDH----------NKGRLPHP----MPDKVIIFSQFLEHIHVIEQQLTISGITYAGMYSPMPLGSKRSSLMKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSGTDNEGARPHRSLHDFAESSYLAQLSFV 1289          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B2QMB3_GLYSO (F-box protein OS=Glycine soja GN=glysoja_024809 PE=4 SV=1)

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 289/416 (69.47%), Postives = 336/416 (80.77%), Query Frame = -2
Query:  386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQ-------DDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKF-LKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609
            NELV+TVRRNILMADWNDPSH+ESLLNPKQWKFRS T++NVRLSCCVAGHIKVT AGEDIQETMD+LV++GLDP S EY  ++YNLLYGG+C RC EWCRLP++TPCRHLLCLDCV +D+  CT PGC  LYEMQ+ E  ARPENP PKWPVPKDLIELQPSYKQ       D+W+PDWQSTSSSKV+YL++RLKAL+  N+E   + +  ++  HI+  L    RSD      +    + +    + PEKVLIFSQFLEHIH IEQQLT AGIK+ GMYSPMHS NK KSLAMFQ+D +CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGA+RPI+VETLAMRGTIEEQM++FLQDAD  R+  +K+ ++     G R  R+LHDFAES+YL +L  V+ N
Sbjct:  896 NELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRE--ARPENPKPKWPVPKDLIELQPSYKQAWLMENSDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSL---HRSDDKSS--IQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTN 1304          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0E0JTP3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 284/411 (69.10%), Postives = 338/411 (82.24%), Query Frame = -2
Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP S EY  I+Y LL G +C RC +WCRLP+VTPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPET ARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+ +L++L+  N +   S + ++ A       CPS +S        +H+ +       +P+KV+IFSQFLEHIHVIEQQLT  GI +AGMYSPM  G+K  SL  F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + +  + +EG+RP R+LHDFAES+YLA+LSFV  + V+
Sbjct:  897 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSGEYQSIRYALLNGASCFRCRDWCRLPVVTPCRHLLCLDCVALDSEKCTLPGCGNHYEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVNKLRSLKAENLKHGYSRNMNNGA-------CPSSQSSCQ-----DHNNVEGRLRHTMPDKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAQLSFVKGSDVA 1295          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.669e-10
Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880
            +VL++ Q    I ++E+ LT+   K+  +       ++  ++A FQ D +    L+   A  LG++L+    V   +  W+ +++ Q + RAHR+G TR + V  L   GTIEE++ +        R   KEE QR
Sbjct: 1417 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERIRK--------RALQKEEVQR 1544          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.915e-10
Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = -2
Query:  509 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADA 880
            K ++FSQF   + +I  +L  AG     +   M    +  ++  F  D +    L+   A  + L+L+  + VF+M+P W+ +++ Q + R HR+G  RPI V TL +  +IE +++E LQ+  A
Sbjct:  710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIE-LQEKKA 833          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.510e-10
Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2
Query:  476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880
            +VL++ Q    I ++E+ LT+   K+  +       ++  ++A FQ        L+   A  LG++L+    V   +  W+ +++ Q + RAHR+G TR + V  L  RGTIEE++ +        R   KEE QR
Sbjct: 1437 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1564          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.223e-10
Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2
Query:  476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880
            +VL++ Q    I ++E+ LT+   K+  +       ++  ++A FQ        L+   A  LG++L+    V   +  W+ +++ Q + RAHR+G TR + V  L  RGTIEE++ +        R   KEE QR
Sbjct: 1436 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1563          
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.279e-10
Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = -2
Query:  476 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQR 880
            +VL++ Q    I ++E+ LT+   K+  +       ++  ++A FQ        L+   A  LG++L+    V   +  W+ +++ Q + RAHR+G TR + V  L  RGTIEE++ +        R   KEE QR
Sbjct: 1436 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRK--------RALQKEEVQR 1563          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D9VAA7_9ORYZ0.000e+069.68Uncharacterized protein OS=Leersia perrieri PE=4 S... [more]
A0A0A9MUM4_ARUDO0.000e+070.62Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
J3L7W7_ORYBR0.000e+070.12Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]
A0A0B2QMB3_GLYSO0.000e+069.47F-box protein OS=Glycine soja GN=glysoja_024809 PE... [more]
A0A0E0JTP3_ORYPU0.000e+069.10Uncharacterized protein OS=Oryza punctata PE=4 SV=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
INO80_PHANO1.669e-1029.41Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
RHP16_SCHPO1.915e-1030.40ATP-dependent helicase rhp16 OS=Schizosaccharomyce... [more]
INO80_ASPCL2.510e-1029.41Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_ASPFU3.223e-1029.41Putative DNA helicase ino80 OS=Neosartorya fumigat... [more]
INO80_NEOFI3.279e-1029.41Putative DNA helicase ino80 OS=Neosartorya fischer... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 254..336
e-value: 2.0E-4
score: 30.7
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 239..336
e-value: 7.3E-9
score: 35.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 231..374
score: 9.772
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 241..363
e-value: 7.9E-11
score: 41.1
coord: 173..192
e-value: 7.9E-11
score: 41.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 241..362
coord: 168..192
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 205..220
e-value: 3.6E-5
score: 22.8
coord: 89..114
e-value: 3.6E-5
score: 22.8
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 1..26
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 90..128
coord: 238..358
NoneNo IPR availablePANTHERPTHR10799:SF573TRANSCRIPTION TERMINATION FACTOR 2coord: 1..26
coord: 165..189
NoneNo IPR availablePANTHERPTHR10799:SF573TRANSCRIPTION TERMINATION FACTOR 2coord: 90..128
NoneNo IPR availablePANTHERPTHR10799:SF573TRANSCRIPTION TERMINATION FACTOR 2coord: 238..358
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 165..189
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 105..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bp
CTCAAATCCAACTCTAAAATATATTTCAATTAGAATTCACCTGTTTGGAA
GATAATGCAATGAATATTCATCCAGACATGTGACATAACATATCAGTAAA
GGCACCATTATACACCAAAAAATGACCTAAAACATACAACCTACAGATAA
TAAATGTTAAATTATCCTATGTATTAGGTACCAAAAAATTAGCAACACCA
AGGTATTTTCTACAACAATGAAAGATGGTTGTGAACTGTACCATGTTCCA
CCAAAAGGTACCGAGTATCAAGAACAAGCTGCACTATATTTGTAGAACCG
TCAACTGAAGTCGGTGCTAATATTTTAAAATGGTGCCCTCCTATCCTTTT
AGAATAACAGTCCTGTAAGTCACTTAGGATACTGAATTTCTATGCACAAA
GCTAAGTCGAGCCAAATAATTACTCTCAGCAAAATCATGGAGTGTTCGAC
AAGGTCGTGAACCCTCATGGCCTGATCTCTGGGACTCTTCTTTCAAAAAT
TTCCTACATGCATCAGCATCCTGTAAGAATTCCATCATTTGTTCTTCAAT
TGTACCACGCATGGCTAAAGTTTCCACATGAATTGGACGAGTAGCACCCA
TCCGATGGGCACGACTAATGACTTGTTCCTCCATGCTTCTGTCCCAAATA
GGCTCCATTAAAAATACATGAGTAACAAAACTTAAATCAAGACCCAATGC
AGCACTCCCATCCATCAAGAGAGCCATGCAGCTATCATCATACTGGAACA
TGGCCAGTGACTTCATCTTGTTGCCAGAATGCATTGGACTATACATTCCA
GCAAACTTGATACCAGCAAAAGTAAGCTGCTGCTCAATAACATGTATATG
CTCAAGAAATTGGGAAAATATTAGAACTTTCTCTGGAAGCATCTTGCATG
ACTCATTGCCCAGTCTAGAGTGATTCAGCAGCAAAGGCACGCCCATATCA
CTCCTCTGTGAAGGACAAAGAAACTTATCTATGTGCTTGGCTTCATCATC
TTCATCCATAGAGCAACGGACCTCTTTATTTACCTCCTGCAATGCCTTCA
GCCTCTCCATAAGATAAGCAACTTTACTGCTAGAGGTTGATTGCCAATCA
GGATTCCAGTCATCCTGTTTATATGAAGGTTGTAATTCGATAAGATCTTT
TGGGACAGGCCACTTGGGATTTGGATTTTCCGGGCGCGCTAATGTTTCAG
GAGTCTGCATCTCATATAAGTGACCACAGCCAGGTAAAGTACACATTTTA
CTGTCCAAACCAACACAATCAAGGCACAAAAGATGCCTACATGGGGTAAC
AATTGGTAGACGGCACCATTCATTGCATCTCTGACAATTACCACCATAAA
GGAGGTTATATTTAATAAAAGCATATTCTTCTGAAAGAGGATCCAGGCCA
TTTTCAACTAAAATGTCCATTGTTTCTTGAATATCTTCACCAGCTTCTGT
CACTTTTATATGCCCAGCCACACAACAAGACAACCTGACATTTCTAATTG
TTGTACTCCGAAACTTCCACTGCTTTGGATTTAATAAACTTTCAACATGA
GAAGGATCATTCCAGTCAGCCATTAGAATATTACGCCGCACTGTAACTAC
CAATTCATTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C-like
IPR027417P-loop_NTPase
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS