g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D9VAA7_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 285/409 (69.68%), Postives = 337/409 (82.40%), Query Frame = -2 Query: 383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y+LL G +C RC WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L R + ++ + C S +S +H+ + + +P+KV+IFSQFLEHIHVIEQQLT AGI +AGMYSPM G+K SLA F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD+DACR+ + + + + +EG+RP R+LHDFAES+YLA+L FV + S Sbjct: 909 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSEEYQSIRYSLLNGASCFRCRYWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGNRYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRNL-------RAESMKHGYSRSMSNGACFSGQSSCQ-----DHNNVESTLPHTMPDKVIIFSQFLEHIHVIEQQLTIAGITYAGMYSPMPLGSKRSSLAKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSDACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAKLGFVQKGS 1305
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0A9MUM4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 286/405 (70.62%), Postives = 327/405 (80.74%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD LV+ GLDP SEEY I+Y L G +C RC WCRLP++TPCRHLLCL+CV LDS+ CTLPGCG+ YEMQ+PETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKVAYL+E+L+ L+E S + A H C S H++L +KV+IFSQFLEHIHVI+QQLT AGI +AGMYSPM G+K +L FQ D +CMALLMDG+AALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM++ LQD++ACRK + + + + +EG R R+LHDFAES+YLA+LSFV Sbjct: 679 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRATTIKNVRLSCCVAGHIKVAEAGQDIQETMDALVQKGLDPSSEEYQLIRYALFNGADCVRCKNWCRLPVITPCRHLLCLNCVALDSEKCTLPGCGNHYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVAYLVEKLRTLRETGLNHGNSTYIANGAGHASAPSCQS------------HTKL---------DKVIIFSQFLEHIHVIQQQLTIAGITYAGMYSPMPLGSKRSALMKFQDDPTCMALLMDGTAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMCGTIEEQMLKLLQDSNACRKMVNKGTSSTDNEGGRSHRSLHDFAESSYLAKLSFV 1062
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: J3L7W7_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G53230 PE=4 SV=1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 284/405 (70.12%), Postives = 334/405 (82.47%), Query Frame = -2 Query: 395 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFV 1609 NEL VT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP SEEY I+Y LL G +C RC +WCRLP++TPCRHLLCLDCV LDS+ CTLPGCG YEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+E+L+ L+ N + CS + ++ A + C N RL + +P+KV+IFSQFLEHIHVIEQQLT +GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV Sbjct: 899 NELAVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQQGLDPSSEEYQSIRYALLNGASCFRCRDWCRLPVITPCRHLLCLDCVALDSEKCTLPGCGKHYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVEKLRGLRAENIKHGCSSNRNNGACLSSQSSCQDH----------NKGRLPHP----MPDKVIIFSQFLEHIHVIEQQLTISGITYAGMYSPMPLGSKRSSLMKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSGTDNEGARPHRSLHDFAESSYLAQLSFV 1289
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B2QMB3_GLYSO (F-box protein OS=Glycine soja GN=glysoja_024809 PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 289/416 (69.47%), Postives = 336/416 (80.77%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQ-------DDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKF-LKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELV+TVRRNILMADWNDPSH+ESLLNPKQWKFRS T++NVRLSCCVAGHIKVT AGEDIQETMD+LV++GLDP S EY ++YNLLYGG+C RC EWCRLP++TPCRHLLCLDCV +D+ CT PGC LYEMQ+ E ARPENP PKWPVPKDLIELQPSYKQ D+W+PDWQSTSSSKV+YL++RLKAL+ N+E + + ++ HI+ L RSD + + + + PEKVLIFSQFLEHIH IEQQLT AGIK+ GMYSPMHS NK KSLAMFQ+D +CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGA+RPI+VETLAMRGTIEEQM++FLQDAD R+ +K+ ++ G R R+LHDFAES+YL +L V+ N Sbjct: 896 NELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRE--ARPENPKPKWPVPKDLIELQPSYKQAWLMENSDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSL---HRSDDKSS--IQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTN 1304
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0E0JTP3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 284/411 (69.10%), Postives = 338/411 (82.24%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVT+RRNILMADWNDPSHVESLLNPKQWKFR+TTI+NVRLSCCVAGHIKV EAG+DIQETMD L++ GLDP S EY I+Y LL G +C RC +WCRLP+VTPCRHLLCLDCV LDS+ CTLPGCG+ YEMQTPET ARPENPNPKWPVPKDLIELQPSYKQDDW+PDWQST+SSKVAYL+ +L++L+ N + S + ++ A CPS +S +H+ + +P+KV+IFSQFLEHIHVIEQQLT GI +AGMYSPM G+K SL F+ D +CMAL+MDG+AALGLDLSFV++VFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM++ LQD++ACR+ + + + + +EG+RP R+LHDFAES+YLA+LSFV + V+ Sbjct: 897 NELVVTIRRNILMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLGLDPSSGEYQSIRYALLNGASCFRCRDWCRLPVVTPCRHLLCLDCVALDSEKCTLPGCGNHYEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVNKLRSLKAENLKHGYSRNMNNGA-------CPSSQSSCQ-----DHNNVEGRLRHTMPDKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSSTDNEGARPHRSLHDFAESSYLAQLSFVKGSDVA 1295
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.171e-12 Identity = 61/275 (22.18%), Postives = 108/275 (39.27%), Query Frame = -2 Query: 536 GNCQRCNEWCRLPIVTPCRHLLCLDCV-----GLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQM 1342 G C C E ++TPC H LC +C+ S +C P C + Q E + P + V K+ +E SSK+ L+E L+ L+ K ++FSQ+ + +++ L+ F + + + K L F D S + LLM + +G++L+ ++ F+M+P W+ ++EEQ + R HR+G T+ + + ++GT+EE+M Sbjct: 792 GECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLC--PVCRNTVSKQ--ELITAPTESRFQVDVEKNWVE------------------SSKITALLEELEGLRSSGS------------------------------------------------KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM 996
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAD5 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.179e-12 Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = -2 Query: 521 KMLPE--KVLIFSQFLEHIHVIEQQL---TFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQ 895 K LP+ K ++FSQF ++ +I+ +L +F G S + +K+ F + L+ + +GL+L H F+M+P W + E Q I R HRMG T+ +HV + ++EE+M++ Q Sbjct: 869 KQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKA---FGLSKGSVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQ 995
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CANGA (DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.332e-12 Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = -2 Query: 518 EKVLIFSQFLEHIHVIEQQLT-------FAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQD 883 E+V++FSQF ++ ++E QL KF G S ++ + Y + LL + +GL+L+ ++ F+M+P W SME+Q I R HR+G T + V + G+IEE+M+ +QD Sbjct: 994 EQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLR-IQD 1121
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.061e-12 Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -2 Query: 530 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 880 K ++FSQF + +IE LT A IKF + M + L F LL+ + +GL+L+ VF+M+P W ++E Q I R HRMG + V+ ++ ++EE+M++ Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLK 1121
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.891e-12 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = -2 Query: 530 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 883 EK ++FSQ+ + ++E L G +F + + K L F LLM A +GL+L+ + VFLM+P W+ ++EEQ I R HR+G R + V ++ T+EE+M + Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQ 1246
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_MOUSE (E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.629e-11 Identity = 57/195 (29.23%), Postives = 92/195 (47.18%), Query Frame = -2 Query: 512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093 Q+TS +V+Y+ KA QE + V+ S EA + + L Q D G K L+FS + + + +I + LT ++F + ++L+ F+YD LL+ + + GL + THV L+EPI + + E Q I R HR+G T+P V ++ TIEE+M L+ A+ Sbjct: 1471 QTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFTQI---SRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1641
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 2.601e-11 Identity = 62/281 (22.06%), Postives = 112/281 (39.86%), Query Frame = -2 Query: 527 CQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKD------LIELQPS--YKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 1336 C C + +P++T C H+ C C+ C + + E P+ K P+ ++ L+E P + + D + TSSSK+ LM L L++ N + K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+LS + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCI-----------C----------QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNI----------------------------------------------KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 973
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_HUMAN (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.929e-11 Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = -2 Query: 512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093 Q+TS +++Y+ KA QE + V+ S EA + + L Q D G K L+FS + + + +I + LT ++FA + ++L+ F+ D LL+ + + GL + THV L+EPI + + E Q I R HR+G T+P V ++ TIEE+M L+ A+ Sbjct: 1480 QTTSHKEISYVFTSEKANQEEDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1650
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.149e-10 Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2 Query: 527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880 K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+L + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 967
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.652e-10 Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2 Query: 527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880 K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+L + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 850 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 970 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bpback to top |