g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B0PRQ1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07457 PE=4 SV=1) HSP 1 Score: 863.988 bits (2231), Expect = 0.000e+0 Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS Sbjct: 933 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1343
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2VUD8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1) HSP 1 Score: 848.581 bits (2191), Expect = 0.000e+0 Identity = 403/411 (98.05%), Postives = 406/411 (98.78%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGH+GSRPCRTLHDFAESNYLARLSF HRNSVS Sbjct: 935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHDGSRPCRTLHDFAESNYLARLSFAHRNSVS 1345
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A061FRB8_THECC (SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045253 PE=4 SV=1) HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0 Identity = 385/411 (93.67%), Postives = 395/411 (96.11%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLP+VTPCRHLLCLDCVGLDSK+CTLPGCG LYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQST+SSKVAYL+ERLKALQEVNKE+RCSMDED++AKHIDK L PSQRS+MGVPLL N SR G ES K LP+KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHS NKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM+EFLQDADACRKFLKEESQR EGSR RTLHDFAESNYLARLSFVHRNSVS Sbjct: 937 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHIDKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGSRTRRTLHDFAESNYLARLSFVHRNSVS 1347
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A061FS07_THECC (SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein isoform 3 OS=Theobroma cacao GN=TCM_045253 PE=4 SV=1) HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0 Identity = 385/411 (93.67%), Postives = 395/411 (96.11%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLP+VTPCRHLLCLDCVGLDSK+CTLPGCG LYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQST+SSKVAYL+ERLKALQEVNKE+RCSMDED++AKHIDK L PSQRS+MGVPLL N SR G ES K LP+KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHS NKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM+EFLQDADACRKFLKEESQR EGSR RTLHDFAESNYLARLSFVHRNSVS Sbjct: 772 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHIDKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGSRTRRTLHDFAESNYLARLSFVHRNSVS 1182
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2V0N4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1) HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0 Identity = 383/411 (93.19%), Postives = 386/411 (93.92%), Query Frame = -2 Query: 377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQ MKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGH+GSRPCRTLHDFAESNYLARLSF HRNSVS Sbjct: 935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQ--------------------MKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHDGSRPCRTLHDFAESNYLARLSFAHRNSVS 1325
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: B9RGB4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1452670 PE=4 SV=1) HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0 Identity = 328/408 (80.39%), Postives = 360/408 (88.24%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRS +IRNVRLSCCVAGHIKVT+AGEDIQETMD L E GLDP+SEEYA IKY L YGGNC RC EWCRLP+VTPCRHLLCLDCVGLDS+ CTLPGCG+LYEMQTP++L RPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKV+YL++R+K L E N E D++ +AK+I + L PSQ + LL + SR +ES K PEKVLIFSQFLEHIHVIEQQLTFAGIKFAG+YSPMHS NKMKSLA FQ+D +C+ALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRP+ VETLAMRGTIEEQM+EFLQDAD CRK LKEE ++ HEG+RP R+LHDFAE NYLARLSFVH+N Sbjct: 914 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSASIRNVRLSCCVAGHIKVTDAGEDIQETMDDLAEKGLDPISEEYALIKYYLQYGGNCLRCQEWCRLPVVTPCRHLLCLDCVGLDSEKCTLPGCGYLYEMQTPDSLTRPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRMKVLLEANSE-SGHYDKEADAKNIKEHLYPSQIGESNA-LLQDCSRQSSESYKKAPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGLYSPMHSSNKMKSLATFQHDATCLALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPVQVETLAMRGTIEEQMLEFLQDADECRKLLKEEFRKPDHEGARPRRSLHDFAERNYLARLSFVHKN 1319
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A5BGE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032626 PE=4 SV=1) HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0 Identity = 323/409 (78.97%), Postives = 360/409 (88.02%), Query Frame = -2 Query: 383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFR +TI+NVRLSCCVAGHIKVT+AGEDIQETMDILVENGLDP+S+EYAFIKYNLLYGG C RC EWCRLP++TPCRHLLCLDCV LDS+ CT PGCG+LYEMQ+PE L RPENPNPKWPVPKDLIELQPSYKQD W+PDWQSTSSSKV Y+++RLKALQE N++ +MDED + K ID+ + S++++ L +++RL +E+ + PEKVLIFSQFLEHIHVIEQQLT AGIKF+GMYSPMHS NKMKSL+ FQ+D CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM+EFLQDAD CR+FLKEE + EG R R+LHDFAESNYLA LSFV NS Sbjct: 798 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRISTIKNVRLSCCVAGHIKVTDAGEDIQETMDILVENGLDPISDEYAFIKYNLLYGGACMRCKEWCRLPVITPCRHLLCLDCVALDSEKCTFPGCGNLYEMQSPEILTRPENPNPKWPVPKDLIELQPSYKQDTWDPDWQSTSSSKVTYIVKRLKALQEANRKSGYAMDEDSDIKDIDELVSLSEQNNCNALLQQDYTRLNDETSHISPEKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIRVETLAMRGTIEEQMLEFLQDADECRRFLKEEFGKPYSEGVRAHRSLHDFAESNYLAHLSFVRTNS 1206
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: V4U415_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004162mg PE=4 SV=1) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 322/409 (78.73%), Postives = 356/409 (87.04%), Query Frame = -2 Query: 383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN+RLSCCVAGHIKVT+AGEDIQETMD+LVENGLDPLS+EYAFIKYNLL GGNC RCNEWCRLP++TPCRH+LCLDCV +DS+ C+LPGCG LYEMQ+PE L RPENPNPKWPVPKDLIELQPSY+QDDWNPDWQSTSSSKVAYL+E+LK LQE N E+ + +ED KHI++ Q S+ L + R ES K LP+KV+IFSQFLEHIHVIEQQLT AGIKFAGMYSPMHS NK+KSL MF++D SC+ALLMDGSA+LGLDLSFVT VFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT+EEQM+EFLQD D CR+ LKEE + EG+R RTLHDFAESNYL+ LSFV NS Sbjct: 931 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRCNEWCRLPVITPCRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPKDLIELQPSYRQDDWNPDWQSTSSSKVAYLVEKLKVLQEANWEICYAFNEDSSVKHIEELPFTPQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTNS 1339
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: M5XQS9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015535mg PE=4 SV=1) HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0 Identity = 318/411 (77.37%), Postives = 357/411 (86.86%), Query Frame = -2 Query: 386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYK---QDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTI NVRLSCCVAGHIKVT+AGEDIQETMDIL E+GLDP SEEYAFIKYNLLYGGNC RC EWCRLP++TPCRHLLCLDCVGLDS+ CT PGCGHLYEM+TP+ L RPENPNPKWPVPKDLIELQPSYK QD+W+PDWQSTSSSKVAY++++LKALQE N V C +D+++ A D +C S+ S+ ++ + ++ + EKVL+FSQFLEHIHVIEQQLT AGIK+AGMYSPMHS NKMKSLAMFQ+D SC LLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQV+SRAHRMGATRPIHVETLAMRGTIEEQM+EFLQDAD CR+FLKEE +S +G+R R+LHDFAESNYL+++SFV N Sbjct: 918 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIGNVRLSCCVAGHIKVTDAGEDIQETMDILAEDGLDPTSEEYAFIKYNLLYGGNCIRCKEWCRLPVITPCRHLLCLDCVGLDSERCTYPGCGHLYEMETPDALTRPENPNPKWPVPKDLIELQPSYKQARQDNWDPDWQSTSSSKVAYVVQKLKALQEANSNVDCPLDDNNNAMRTDNLVCLSEMSNSKGLRQVHDFKRTTKTHETNLEKVLVFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSNKMKSLAMFQHDASCTVLLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVVSRAHRMGATRPIHVETLAMRGTIEEQMLEFLQDADECRRFLKEEVGKSDPKGARTRRSLHDFAESNYLSQISFVRTN 1328
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2RW69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1) HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0 Identity = 318/324 (98.15%), Postives = 320/324 (98.77%), Query Frame = -2 Query: 638 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR 1609 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR Sbjct: 935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR 1258
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.171e-12 Identity = 61/275 (22.18%), Postives = 108/275 (39.27%), Query Frame = -2 Query: 536 GNCQRCNEWCRLPIVTPCRHLLCLDCV-----GLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQM 1342 G C C E ++TPC H LC +C+ S +C P C + Q E + P + V K+ +E SSK+ L+E L+ L+ K ++FSQ+ + +++ L+ F + + + K L F D S + LLM + +G++L+ ++ F+M+P W+ ++EEQ + R HR+G T+ + + ++GT+EE+M Sbjct: 792 GECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLC--PVCRNTVSKQ--ELITAPTESRFQVDVEKNWVE------------------SSKITALLEELEGLRSSGS------------------------------------------------KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM 996
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAD5 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.179e-12 Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = -2 Query: 521 KMLPE--KVLIFSQFLEHIHVIEQQL---TFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQ 895 K LP+ K ++FSQF ++ +I+ +L +F G S + +K+ F + L+ + +GL+L H F+M+P W + E Q I R HRMG T+ +HV + ++EE+M++ Q Sbjct: 869 KQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKA---FGLSKGSVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQ 995
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CANGA (DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.332e-12 Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = -2 Query: 518 EKVLIFSQFLEHIHVIEQQLT-------FAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQD 883 E+V++FSQF ++ ++E QL KF G S ++ + Y + LL + +GL+L+ ++ F+M+P W SME+Q I R HR+G T + V + G+IEE+M+ +QD Sbjct: 994 EQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLR-IQD 1121
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.061e-12 Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -2 Query: 530 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 880 K ++FSQF + +IE LT A IKF + M + L F LL+ + +GL+L+ VF+M+P W ++E Q I R HRMG + V+ ++ ++EE+M++ Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLK 1121
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.891e-12 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = -2 Query: 530 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 883 EK ++FSQ+ + ++E L G +F + + K L F LLM A +GL+L+ + VFLM+P W+ ++EEQ I R HR+G R + V ++ T+EE+M + Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQ 1246
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_MOUSE (E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.629e-11 Identity = 57/195 (29.23%), Postives = 92/195 (47.18%), Query Frame = -2 Query: 512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093 Q+TS +V+Y+ KA QE + V+ S EA + + L Q D G K L+FS + + + +I + LT ++F + ++L+ F+YD LL+ + + GL + THV L+EPI + + E Q I R HR+G T+P V ++ TIEE+M L+ A+ Sbjct: 1471 QTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFTQI---SRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1641
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 2.601e-11 Identity = 62/281 (22.06%), Postives = 112/281 (39.86%), Query Frame = -2 Query: 527 CQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKD------LIELQPS--YKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 1336 C C + +P++T C H+ C C+ C + + E P+ K P+ ++ L+E P + + D + TSSSK+ LM L L++ N + K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+LS + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCI-----------C----------QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNI----------------------------------------------KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 973
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_HUMAN (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.929e-11 Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = -2 Query: 512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093 Q+TS +++Y+ KA QE + V+ S EA + + L Q D G K L+FS + + + +I + LT ++FA + ++L+ F+ D LL+ + + GL + THV L+EPI + + E Q I R HR+G T+P V ++ TIEE+M L+ A+ Sbjct: 1480 QTTSHKEISYVFTSEKANQEEDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1650
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.149e-10 Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2 Query: 527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880 K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+L + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 967
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.652e-10 Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2 Query: 527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880 K L+ SQF + +IE L +G F + M +++S+ FQ ++ + LL + +GL+L + VFLM+P W+ + E+Q R HR+G + + + ++ ++EE M++ Sbjct: 850 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 970 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bpback to top |