g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011991
Unique Nameg.arboreum_cottongen_reftransV1_0011991
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1854
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0011991:42..1854 .
Chr3:91493873..91495900 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V4VBY0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030523mg PE=4 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 1.010e-109
Identity = 185/251 (73.71%), Postives = 207/251 (82.47%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+  L  K        Y P QGK   N RGLRSAG RHRS DM+MESRSGTPSED++K     +SRNGNYRPFK PL+  LDDF  SG+K R+AWQ+GI KKQ+S G M KRE
Sbjct: 1134 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGVMTKRE 1373          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9GUK8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09410g PE=4 SV=2)

HSP 1 Score: 370.163 bits (949), Expect = 1.817e-109
Identity = 181/251 (72.11%), Postives = 214/251 (85.26%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCL+LYEHLQ+++KSLG+ +I+VGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA++LVQSDDWAALI+DAKARNCYM+MDSLPKDF   L+ K   G +G        +SN+RGL+  GPRHRS D HM+S+S  PSED++ SG +VISRNG+YRPFK  +D+  D+F  SGDKSR+AWQYGI KKQ S+  +GKR+S
Sbjct: 1144 FCLQLYEHLQKSLKSLGMGRISVGIITPYKLQLKCLQQEFLAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSDDWAALISDAKARNCYMNMDSLPKDF---LVSKGVLG-KG--------SSNVRGLKLGGPRHRSFDKHMDSKSRMPSEDDENSGASVISRNGSYRPFKPAMDSSFDEFDQSGDKSRDAWQYGIQKKQGSSAIVGKRDS 1381          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TNR6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 1.245e-105
Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF   L+ K   GP  +Y+P  GK  SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G +  SRNGN+RP +   +  LDD       SR+AWQ+G  K+Q S GTM KR+
Sbjct:  631 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 867          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K4BTS0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g072830.2 PE=4 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.490e-104
Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREF  VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS HGVGFVADIRRMNVALTRARRALWVMGNA++LVQS+DWAALIADAK R CYMDMD+LPKDF   LLPK  S     ++P Q   SN RGLRS G RHR  D HME RSGTPSED++K     + RNG+YRP K  LD  L+DF    D+SR+AWQ GI ++QN+AG +G+R+
Sbjct:  681 FCLRLYEHLQKTCKSLGVGKVTVGIITPYKLQLKCLQREFGDVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSEDWAALIADAKTRKCYMDMDTLPKDF---LLPKAAS-----HAPPQTNMSNNRGLRS-GLRHRIYDPHMEPRSGTPSEDDEKPNALYV-RNGSYRPPKPSLDNSLNDFDQPADRSRDAWQNGIQRRQNTAG-IGRRD 918          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TM34_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 8.654e-104
Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF   L+ K   GP  +Y+P  GK  SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G +  SRNGN+RP +   +  LDD       SR+AWQ+G  K+Q S GTM KR+
Sbjct:  919 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 1155          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.124e-14
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGK------RDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            E L   +   GV    +G+IT Y+ Q     R F       +G        ++ I +VDAFQG+E+D II++CVR++   G+GF++D RR+NVA+TRA+  L ++GNA  L + D W  LI   K++
Sbjct:  748 EKLVSKLIKAGVQPHQIGVITSYEGQ-----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.448e-12
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS--------SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLP--KDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAG 518
            ++ E ++R   +  V +  +G+ITPY+ Q+  ++   + +  TE     + + +V+ FQGQE+ VII+S VR++        ++ +GF+++ RR NVA+TRA   L ++GN   + +  +W  L+      N Y     LP  ++F ++   +E S   G   P + + +N   L + G
Sbjct:  690 KVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE-----VKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGC-GLPEQEEFVEEPFKQEGSS-NGPQYPPEAEWNNSGELNNGG 861          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_CHICK (Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.799e-12
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   15 LYEHLQRTIKSLG---VPKIT---VGIITPYKLQLKCLQREFES---VLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            + ++LQ+ ++S G    P I+   +GII+PY+ Q++ ++    S   VLR       + + +V+ FQGQER VI++S VR+ S  +        GF+ + +R+NVALTRA+  L V+GNA+ L +   W   +   +    Y
Sbjct:  800 VVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.009e-12
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   66 TVGIITPYKLQLK----CLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            +VG+I+PY+ Q++    C+ +  +  LR  +  +D+ + +V+ FQGQER VI++S VR+S   V        GF+ + +R NVA+TRA+  L V+GN   L    DW   +   K    Y
Sbjct:  826 SVGVISPYRKQVEKIRYCITK-LDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: DNA2_XENLA (DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.066e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VG-FVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDM 398
            +L  HL +     G     +GII PY+ QLK +   F S+         + +NTVD +QG+++ VII+S VR++  G +G  + D RR+NVALTRA+  L ++G    L + D    LI + K  N   D+
Sbjct:  918 KLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-----SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDL 1043          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4VBY0_9ROSI1.010e-10973.71Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9GUK8_POPTR1.817e-10972.11Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A072TNR6_MEDTR1.245e-10570.36Uncharacterized protein OS=Medicago truncatula GN=... [more]
K4BTS0_SOLLC1.490e-10472.00Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A072TM34_MEDTR8.654e-10470.36Uncharacterized protein OS=Medicago truncatula GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RENT1_CAEEL2.124e-1437.80Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
SDE3_ARATH1.448e-1227.93Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
MOV10_CHICK1.799e-1233.10Putative helicase MOV-10 OS=Gallus gallus GN=MOV10... [more]
MOV10_BOVIN2.009e-1235.00Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE... [more]
DNA2_XENLA2.066e-1235.88DNA replication ATP-dependent helicase/nuclease DN... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13087AAA_12coord: 6..105
e-value: 2.8E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR10887:SF359HELICASE SEN1coord: 1..249
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 1..249
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 44..108
e-value: 5.3E-6
score: 25.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..134

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bp
TATTTTGTTTGCGCTTATATGAGCATCTACAGAGAACTATAAAATCTTTG
GGTGTGCCAAAAATCACAGTTGGTATAATAACACCATACAAGCTGCAATT
AAAATGCCTACAACGTGAGTTTGAGAGTGTTCTAAGGACAGAGGAAGGGA
AGAGGGATATCTATATTAATACTGTAGATGCTTTCCAGGGCCAGGAGCGT
GATGTTATTATTATGTCTTGTGTCCGTGCCTCAAGTCATGGGGTGGGCTT
TGTTGCAGATATTCGACGAATGAATGTTGCTCTTACTCGTGCTAGAAGGG
CTTTGTGGGTTATGGGTAATGCCAGTGCTCTGGTGCAATCAGATGACTGG
GCAGCCTTAATTGCTGATGCCAAAGCTAGGAATTGTTATATGGACATGGA
TTCTCTCCCCAAGGACTTCACAAAAGACTTGCTCCCCAAAGAATTTTCAG
GGCCAAGGGGACTTTACTCTCCATCACAGGGTAAGGCTTCTAATATGAGA
GGTTTAAGGTCTGCTGGACCAAGACATAGATCACTTGATATGCACATGGA
ATCCAGGTCAGGAACACCATCAGAGGATGAAGATAAGTCAGGCACAACTG
TAATTTCTAGGAATGGGAATTATCGGCCATTTAAGTCGCCACTGGATACT
TTTTTGGATGATTTTCATCCGTCAGGTGACAAATCTAGAGAGGCCTGGCA
ATATGGTATACTGAAGAAGCAAAATTCTGCTGGTACAATGGGGAAAAGAG
AGTCCTAGGCATTGGTTGTTGTCTACGAACTGTTTTGGCTCATGGCGGTC
CGTGGAGCAGAACTTTATTTATAATCCTTGCATTGAAATTTATGGAGCTC
TTAGCTCCATGAGTATTGAAACAATTTGTTGGAAGTTGGTGCCAGACTTG
TGTCTGATAATTGCCCTAAGATGAACAAGTTGAGAGGGATTTGCATGGGT
CACCAGTGAACTTTTGCCAGTCTGCCATGTTGATTCCTGCTAGGAAGTGG
ATGATCTGGGGGGTAGGATGTATGAGATCAAACCCTAGATCCACCCAGAC
AGGCTTCGAAGGAGTTGAATGCTGGCATTAAGAGTTGTGCCGCCCTACAA
TATCCCTTTGCTTGATAATTGATTGTTGCAATCTGCTATTACTTGGATGA
AGTCTTTAATCGATACAGTTGGGCAGTCATTTCAAATTCTGGTGCTCTTT
GACTTTTGTCCTTTTCCACAATACACTGAATGCATGGCCGACTCTTCAGT
TTGGGGATGTGAATTCTTTTGGATCTGTCAAATTTGAAGTTACATTCATC
AAATTTACAAATGCTTGCAAAATGTCAGAGGACGAGTAGCGATTCTTGAG
CGGGTGTGCTTTGCAGAATCCTAAGAATCAACCTCTATCAAAGTTGCCGT
ATATATTCTTTGAACATGGAGATGCACTTCGGTGATAACTTTTTAGTTCT
GCAGGATACGGGTTGGTTAACCAAGTATTCTTTGCTTTTGTTCTTTATGT
TAATTTTCCTTGGTTCTTTAAACCAAAAGACTTGGATAGAAATAGGACAC
ACCTCCAAAATTCTGTATAGAGAAGTAAGACTCCTAAAAGGGTACAGAAT
TGTGCGAGGAACTCTCATCTAGCTGACTTTGTGTATACAGCTTCAGGTGG
AACCAAAGAATTCTTTCTCAGCTGCGAAAAACCTCAGCTGCTGTTTTTTT
TTTTTTTTAAACTTGAAAACCATCAAATAATGGCCCAAGGTTTTAAACTA
TACTATTTGTTTTATTTTCCTATAATGAGATGTACTTTTCCTCAGATTGC
CATTACTTAAAAGTAATGCGGGGGATACAATTTATGTAGCGATGAACATA
TCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase