g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V4VBY0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030523mg PE=4 SV=1) HSP 1 Score: 370.548 bits (950), Expect = 1.010e-109 Identity = 185/251 (73.71%), Postives = 207/251 (82.47%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+ L K Y P QGK N RGLRSAG RHRS DM+MESRSGTPSED++K +SRNGNYRPFK PL+ LDDF SG+K R+AWQ+GI KKQ+S G M KRE Sbjct: 1134 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGVMTKRE 1373
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9GUK8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09410g PE=4 SV=2) HSP 1 Score: 370.163 bits (949), Expect = 1.817e-109 Identity = 181/251 (72.11%), Postives = 214/251 (85.26%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCL+LYEHLQ+++KSLG+ +I+VGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA++LVQSDDWAALI+DAKARNCYM+MDSLPKDF L+ K G +G +SN+RGL+ GPRHRS D HM+S+S PSED++ SG +VISRNG+YRPFK +D+ D+F SGDKSR+AWQYGI KKQ S+ +GKR+S Sbjct: 1144 FCLQLYEHLQKSLKSLGMGRISVGIITPYKLQLKCLQQEFLAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSDDWAALISDAKARNCYMNMDSLPKDF---LVSKGVLG-KG--------SSNVRGLKLGGPRHRSFDKHMDSKSRMPSEDDENSGASVISRNGSYRPFKPAMDSSFDEFDQSGDKSRDAWQYGIQKKQGSSAIVGKRDS 1381
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TNR6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 1.245e-105 Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF L+ K GP +Y+P GK SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G + SRNGN+RP + + LDD SR+AWQ+G K+Q S GTM KR+ Sbjct: 631 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 867
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K4BTS0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g072830.2 PE=4 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 1.490e-104 Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREF VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS HGVGFVADIRRMNVALTRARRALWVMGNA++LVQS+DWAALIADAK R CYMDMD+LPKDF LLPK S ++P Q SN RGLRS G RHR D HME RSGTPSED++K + RNG+YRP K LD L+DF D+SR+AWQ GI ++QN+AG +G+R+ Sbjct: 681 FCLRLYEHLQKTCKSLGVGKVTVGIITPYKLQLKCLQREFGDVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSEDWAALIADAKTRKCYMDMDTLPKDF---LLPKAAS-----HAPPQTNMSNNRGLRS-GLRHRIYDPHMEPRSGTPSEDDEKPNALYV-RNGSYRPPKPSLDNSLNDFDQPADRSRDAWQNGIQRRQNTAG-IGRRD 918
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TM34_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 8.654e-104 Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF L+ K GP +Y+P GK SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G + SRNGN+RP + + LDD SR+AWQ+G K+Q S GTM KR+ Sbjct: 919 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 1155
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.124e-14 Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGK------RDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 E L + GV +G+IT Y+ Q R F +G ++ I +VDAFQG+E+D II++CVR++ G+GF++D RR+NVA+TRA+ L ++GNA L + D W LI K++ Sbjct: 748 EKLVSKLIKAGVQPHQIGVITSYEGQ-----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.448e-12 Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS--------SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLP--KDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAG 518 ++ E ++R + V + +G+ITPY+ Q+ ++ + + TE + + +V+ FQGQE+ VII+S VR++ ++ +GF+++ RR NVA+TRA L ++GN + + +W L+ N Y LP ++F ++ +E S G P + + +N L + G Sbjct: 690 KVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE-----VKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGC-GLPEQEEFVEEPFKQEGSS-NGPQYPPEAEWNNSGELNNGG 861
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_CHICK (Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.799e-12 Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 3 Query: 15 LYEHLQRTIKSLG---VPKIT---VGIITPYKLQLKCLQREFES---VLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389 + ++LQ+ ++S G P I+ +GII+PY+ Q++ ++ S VLR + + +V+ FQGQER VI++S VR+ S + GF+ + +R+NVALTRA+ L V+GNA+ L + W + + Y Sbjct: 800 VVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.009e-12 Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 3 Query: 66 TVGIITPYKLQLK----CLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389 +VG+I+PY+ Q++ C+ + + LR + +D+ + +V+ FQGQER VI++S VR+S V GF+ + +R NVA+TRA+ L V+GN L DW + K Y Sbjct: 826 SVGVISPYRKQVEKIRYCITK-LDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: DNA2_XENLA (DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.066e-12 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VG-FVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDM 398 +L HL + G +GII PY+ QLK + F S+ + +NTVD +QG+++ VII+S VR++ G +G + D RR+NVALTRA+ L ++G L + D LI + K N D+ Sbjct: 918 KLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-----SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDL 1043 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|