g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V4VBY0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030523mg PE=4 SV=1) HSP 1 Score: 370.548 bits (950), Expect = 1.010e-109 Identity = 185/251 (73.71%), Postives = 207/251 (82.47%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+ L K Y P QGK N RGLRSAG RHRS DM+MESRSGTPSED++K +SRNGNYRPFK PL+ LDDF SG+K R+AWQ+GI KKQ+S G M KRE Sbjct: 1134 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGVMTKRE 1373
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9GUK8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09410g PE=4 SV=2) HSP 1 Score: 370.163 bits (949), Expect = 1.817e-109 Identity = 181/251 (72.11%), Postives = 214/251 (85.26%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCL+LYEHLQ+++KSLG+ +I+VGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA++LVQSDDWAALI+DAKARNCYM+MDSLPKDF L+ K G +G +SN+RGL+ GPRHRS D HM+S+S PSED++ SG +VISRNG+YRPFK +D+ D+F SGDKSR+AWQYGI KKQ S+ +GKR+S Sbjct: 1144 FCLQLYEHLQKSLKSLGMGRISVGIITPYKLQLKCLQQEFLAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSDDWAALISDAKARNCYMNMDSLPKDF---LVSKGVLG-KG--------SSNVRGLKLGGPRHRSFDKHMDSKSRMPSEDDENSGASVISRNGSYRPFKPAMDSSFDEFDQSGDKSRDAWQYGIQKKQGSSAIVGKRDS 1381
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TNR6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 1.245e-105 Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF L+ K GP +Y+P GK SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G + SRNGN+RP + + LDD SR+AWQ+G K+Q S GTM KR+ Sbjct: 631 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 867
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K4BTS0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g072830.2 PE=4 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 1.490e-104 Identity = 180/250 (72.00%), Postives = 202/250 (80.80%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREF VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS HGVGFVADIRRMNVALTRARRALWVMGNA++LVQS+DWAALIADAK R CYMDMD+LPKDF LLPK S ++P Q SN RGLRS G RHR D HME RSGTPSED++K + RNG+YRP K LD L+DF D+SR+AWQ GI ++QN+AG +G+R+ Sbjct: 681 FCLRLYEHLQKTCKSLGVGKVTVGIITPYKLQLKCLQREFGDVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSEDWAALIADAKTRKCYMDMDTLPKDF---LLPKAAS-----HAPPQTNMSNNRGLRS-GLRHRIYDPHMEPRSGTPSEDDEKPNALYV-RNGSYRPPKPSLDNSLNDFDQPADRSRDAWQNGIQRRQNTAG-IGRRD 918
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A072TM34_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g020390 PE=4 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 8.654e-104 Identity = 178/253 (70.36%), Postives = 210/253 (83.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRH-RSLDMHMESRSGTPSEDEDK-SGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+PKI+VGIITPYKLQLKCLQREFE VL +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALIADA++RNCYMDMDS+PKDF L+ K GP +Y+P GK SNMRG+RS GPR+ RS++MH ESR G PSED+++ +G + SRNGN+RP + + LDD SR+AWQ+G K+Q S GTM KR+ Sbjct: 919 FCLRLYEHIQKTVKSLGLPKISVGIITPYKLQLKCLQREFEEVLNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASTHGVGFVADIRRMNVALTRARRALWVMGNANALIQSEDWAALIADARSRNCYMDMDSIPKDF---LVTK---GP--VYTPLPGKPPSNMRGIRSGGPRYNRSMEMHTESRVGAPSEDDERMNGASASSRNGNHRPSRYLTENSLDD-------SRDAWQHGNQKRQGSTGTMAKRD 1155
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.862e-17 Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREF--ESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYS 470 E L GV +G+ITPY+ Q + LR ++ ++I + +VD+FQG+E+D II+SCVR++ H G+GF+ D RR+NVALTRAR + ++GN L + W L+ K C ++ +++L + +F PR +Y+ Sbjct: 794 EKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLR-QQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMV------QFQKPRKIYN 941
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_MOUSE (Probable helicase senataxin OS=Mus musculus GN=Setx PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.586e-17 Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 +GIIT YK Q +Q++ E + K ++TVDAFQG+++D II++CVRAS+ +GF+A ++R+NV +TRA+ +L+++G+ L+++ W LI DA+ R Sbjct: 2318 IGIITHYKAQKTMIQKDLEKEF---DKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKR 2420
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.847e-17 Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKA 377 E + +K L KI +ITPY Q++ L+R FE E DI +NTVD FQG+E + I++S VR + GF+ D+RR+NVA+TRA+R L ++GN + L Q + +I AK+ Sbjct: 541 EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFE------EHNIDIEVNTVDGFQGRENEAIVISFVR--TKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKS 651
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 1.189e-16 Identity = 41/106 (38.68%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 +GIIT YK Q +Q++ + + K ++TVDAFQG+++D +I++CVRA+S +GF+A ++R+NV +TRA+ +L+++G+ L+++ W LI DA+ R Sbjct: 2342 IGIITHYKAQKTMIQKDLDKEF---DRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKR 2444
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.378e-16 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASAL 332 EH++ ++S VP+ ++G+I+PY Q+ L++ ++ E DI I+TVD FQG+E+DVII+S VR++ VGF+ + RR+NVA+TR RR L V+GN L Sbjct: 554 EHIE-NLRSFNVPENSIGVISPYNAQVSHLKK----LIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf1 PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 2.861e-16 Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIY----INTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKE 443 +GI+TPY Q + + ++ ++D+Y + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+ + V+GN L + W + K + ++ ++SL K F+ L P + Sbjct: 718 IGIVTPYDGQRSYIVQYMQN---NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTLTPPQ 845
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 3.639e-16 Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 51 GVPKITVGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD 395 G+ +GIITPY+ Q L + +++ L + ++I I +VDAFQG+E+D+IIMSCVR++ G+GF+ D RR+NVALTRA+ + ++GN L + W L+ K R ++ Sbjct: 764 GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRL-YQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE 880
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_MOUSE (Protein ZGRF1 OS=Mus musculus GN=Zgrf1 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 6.835e-16 Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR--------NCYMDMDSLPKDF 419 F L+L + L + GV +G+IT YK Q+ + +V + + ++TVDAFQG E+++ I+SCVR + VGF+ +RMNVALTR RR L ++G+ S L ++ W +I + R C +D L KD+ Sbjct: 1701 FTLKLIQSLMAS----GVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVR--TRQVGFIDSEKRMNVALTRGRRHLLIVGSLSCLRKNRLWGRVIQHCEGREDGLQHASQCEPQLDHLLKDY 1841
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_HUMAN (Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 1.407e-15 Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 F L+L +Q I S G+ +G+IT YK Q+ L +V + + ++TVDAFQG E+++II+SCVR + VGF+ +RMNVALTR +R L ++GN + L ++ W +I + R Sbjct: 1940 FTLKL---IQSLIAS-GIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVR--TRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGR 2059
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.428e-15 Identity = 67/244 (27.46%), Postives = 114/244 (46.72%), Query Frame = 3 Query: 6 CLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYIN----TVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILK 716 C R+ L R GV +G+ITPY+ Q + + + +D+YI +VDAFQG+E+D II+SCVRA+ +GF+ D RR+NV LTRA+ L ++GN +L ++ W L+ + + C ++ +D+L + + P+ PR P + ++ES G + +D +++S +G F + F+D+ S + E W + K Sbjct: 709 CERIITKLFRD----GVKPEQIGVITPYEGQRAYI---LQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLVRPQ----PRKTERPMNAQ------------------FNVESEMGDFPKFQDFDAQSMVSFSGQIGDFG---NAFVDNTELSSYINNEYWNFENFK 920 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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