g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0011991
Unique Name	g.arboreum_cottongen_reftransV1_0011991
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1854

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0011991:42..1854 . Chr3:91493873..91495900 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067JL69_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09856 PE=4 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 2.765e-114
Identity = 187/251 (74.50%), Postives = 213/251 (84.86%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCL+LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNAS+L+QSDDWAALI DAKARNCYMDMDSLPK+F          GP+G  S      SN RG R +GPRHR++D HMESRSGTPSED+D SG  VISRNG+YRPFK  LD  LDDF  +GDKSR+AWQYGI KKQ+S+G +GKR+S
Sbjct: 1100 FCLQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFSAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNASSLIQSDDWAALITDAKARNCYMDMDSLPKEFFVS------KGPQGKGS------SNTRGSRLSGPRHRAMDKHMESRSGTPSEDDDSSGPPVISRNGHYRPFKPLLDNSLDDFDQAGDKSRDAWQYGIQKKQSSSGIVGKRDS 1337

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9H754_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16630g PE=4 SV=2)

HSP 1 Score: 379.407 bits (973), Expect = 5.575e-113
Identity = 183/252 (72.62%), Postives = 214/252 (84.92%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCL+LYEHLQ+++KSLG+ +ITVGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRA+RALWVMGNA++LVQSDDW+AL+ADAKARNCYM+MDSLPKDF              +   + GK +SN+RGLR  GPRHRS DMHMESRSGTPSED++ SG +VISRNG++ PFK P+D  LDDF  SGD+SR+AWQYGI KKQ S+  +GKR S
Sbjct: 1115 FCLQLYEHLQKSLKSLGMGRITVGIITPYKLQLKCLQQEFSAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNATSLVQSDDWSALVADAKARNCYMNMDSLPKDFF-------------VLKGTLGKGSSNVRGLRLGGPRHRSFDMHMESRSGTPSEDDENSGASVISRNGSFGPFKPPMDNSLDDFDQSGDRSRDAWQYGIQKKQGSSAVVGKRGS 1352

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V7AP63_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G130800g PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 6.635e-113
Identity = 186/250 (74.40%), Postives = 212/250 (84.80%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQS+DWAALI DAK+R CYMDMDSLPKDF   L+ K   GP  +Y+     +SNMRG+RSAGPR+RS+DMHMESRSG PSED++  G  + SRNGN+R  +  ++   DDF   GDKSR++WQYGI KKQNS+G MGKR+
Sbjct: 1158 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSEDWAALINDAKSRKCYMDMDSLPKDF---LVSK---GP--VYTSLPKPSSNMRGMRSAGPRYRSMDMHMESRSGAPSEDDENMGAPIGSRNGNHRQSRFSMENSFDDFDHGGDKSRDSWQYGIQKKQNSSGPMGKRD 1398

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9RJG9_RICCO (Splicing endonuclease positive effector sen1, putative OS=Ricinus communis GN=RCOM_1034260 PE=4 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.127e-112
Identity = 184/252 (73.02%), Postives = 212/252 (84.13%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FC +LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+H VGFVADIRRMNVALTRARRALWVMGNA++LV+SDDWAALI DAKARNCYMDM+SLPK+F              +   +QGK +SN RG R  GPRHRS+D+HME+RSGTPSED+D SG  VISRNGNYRPFK  +D  LDDF  SGDKSR+AWQYGI KKQ+S+G +GKRES
Sbjct: 1115 FCFQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFAAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHSVGFVADIRRMNVALTRARRALWVMGNANSLVKSDDWAALIDDAKARNCYMDMESLPKEFF-------------VSKGNQGKGSSNTRGSRLGGPRHRSMDLHMEARSGTPSEDDDSSGAPVISRNGNYRPFKPLMDNSLDDFDQSGDKSRDAWQYGIQKKQSSSGFVGKRES 1352

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A068TXP0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034514001 PE=4 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.537e-112
Identity = 189/250 (75.60%), Postives = 210/250 (84.00%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREFE +L +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+ALV+SDDWAALI DAKARNCYMDMDSLPKDF   +LPK  S P   Y   Q K  + RG+R+ G RHR  D+HMESRSGTPSED++KS T+ I RNG+YR  K P++  LDDF  S DKSR+AWQYG+ KK +SAG MGKRE
Sbjct: 1130 FCLRLYEHLQKTAKSLGVAKVTVGIITPYKLQLKCLQREFEDILNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALVKSDDWAALIKDAKARNCYMDMDSLPKDF---VLPK--SSP---YPSYQAKNPSNRGMRT-GLRHRPYDVHMESRSGTPSEDDEKSNTSSILRNGSYRSLKLPVENSLDDFDQSTDKSRDAWQYGVQKKHHSAGAMGKRE 1369

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7MEG5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.747e-112
Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P        +Y+   GK +SNMRG+RS GPR+RS+DMHMESR G PSED++  G  V SRNGN+R  +  ++  LDD    GDKSR+AWQYGI KK NS+GTMGKR+
Sbjct: 1145 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1386

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7KZI7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 4.572e-112
Identity = 185/251 (73.71%), Postives = 209/251 (83.27%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P   S P        GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++  G  V SRNGN R  +  ++  LDDF   GDKSR+AWQYGI KKQNS+G+MGKR+
Sbjct: 1146 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1387

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2S4L8_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_020716 PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 5.581e-112
Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P        +Y+   GK +SNMRG+RS GPR+RS+DMHMESR G PSED++  G  V SRNGN+R  +  ++  LDD    GDKSR+AWQYGI KK NS+GTMGKR+
Sbjct: 1194 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1435

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2P1B1_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_009604 PE=4 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.485e-111
Identity = 184/251 (73.31%), Postives = 209/251 (83.27%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P   S P        GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++  G  V SRNGN R  +  ++  LDDF   GDKSR+AWQYGI KKQNS+G+MGKR+
Sbjct: 1147 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1388

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0A0L3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G378760 PE=4 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.357e-110
Identity = 180/256 (70.31%), Postives = 210/256 (82.03%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDF------TKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLR+YEHLQ+T+KS G+ K++VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI DAKARNCYMDM+SLPKDF      T+  LP + S             SN RGLRSA PRHR+LD+H+ESRSGTPSED++KS + VI+RNGNYRP K+ ++   +D   SGDK R+ WQYG+ K+Q S GT+GKR+
Sbjct: 1088 FCLRMYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALITDAKARNCYMDMESLPKDFLGQKGSTQSTLPGKNS-------------SNTRGLRSALPRHRTLDIHVESRSGTPSEDDEKSNSAVITRNGNYRPSKAAVENSSEDLDQSGDKLRDTWQYGMQKRQGSTGTVGKRD 1329

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.345e-24
Identity = 67/175 (38.29%), Postives = 105/175 (60.00%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCL----QREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS-SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRS 512
            F L LYE L +   ++      +G++TPY+ Q++ L    QR++ S++      + + I+TVD FQGQE+D+II SCVR+S S G+GF+ D+RR+NVALTRA+ +L+++GN+  L+Q D + +LI DAK R  +           +DL   +F   + + + S   ASN   L S
Sbjct: 1650 FILLLYERLIQCYLNIDFEG-KIGVVTPYRSQVQQLRSQFQRKYGSIIF-----KHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVW-----------RDLSANQFKNSKSISNVSTHLASNNLNLAS 1807

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SEN1_YEAST (Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.569e-22
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRA--SSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNC 386
            +GII+PY+ Q++ +++EF         K  I  NT+D FQGQE+++I++SCVRA  +   VGF+ D RRMNVALTRA+ ++WV+G+  +L +S  W  LI DAK R+C
Sbjct: 1746 IGIISPYREQMQKMRKEFARYFGGMINK-SIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSC 1852

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SEN1_SCHPO (Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.686e-21
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKR---DIYINTVDAFQGQERDVIIMSCVRA-SSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            +G+ITPY+ QL  L+R F    + + GK     I I TVD FQGQE+D+I  SCV++ S HG+GF+ D RR+NVALTRAR +L ++GN   L   D W +L+ DA +R
Sbjct: 1533 IGVITPYRSQLHELRRAF----KVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSR 1636

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MAA3_ARATH (Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.848e-19
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 3

Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARN 383
            F L +Y  L      L      + II+PY  Q+K  +  F+ +  TE  ++ + INTVD FQG+E+DV I SCVRA+ +G +GF+++ RRMNV +TRA+ ++ V+G+A+ L     W  LI  A+ RN
Sbjct:  626 FVLLIYHRLVTMYPELKSSS-QLAIISPYNYQVKTFKDRFKEMFGTE-AEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRN 751

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: Y4399_DICDI (Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.934e-19
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH---GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALI 362
            +GII+PY+ Q+  L+  F++          I I+TVD FQG+ER++II SCVRA      G+GF++D+RRMNVALTR R +L ++GN  AL  + DW  LI
Sbjct:  744 IGIISPYRQQVLALREIFKNY-------PGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELI 837

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=2E4.130 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.631e-19
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 3

Query:   51 GVPKITVGIITPYKLQLKCLQREFESV-LRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS-SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSP----SQGKASNMRGLRSAGP 521
            GV    +G+ITPY+ Q   +    ++     +E  R++ + +VDAFQG+E+D I++SCVR++ + G+GF++D RR+NVALTRA+  L ++GN   L + + W  L+   K + C   ++    +    LL  +F  PR  Y P    +Q  AS     R A P
Sbjct:  769 GVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCL--VEGPLTNLQPSLL--QFGRPRQAYRPQRSHTQHVASGPSNGRFAAP 927

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.161e-18
Identity = 56/135 (41.48%), Postives = 85/135 (62.96%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL 464
            +GIITPY+ Q   L +  +F   L T+   +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR  + ++GN  AL +   W  L++  K +   ++    P +  ++ L  +FS PR L
Sbjct:  796 IGIITPYEGQRSYLVQYMQFSGSLHTKL-YQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEG---PLNNLRESL-MQFSKPRKL 925

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_TAKRU (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes GN=rent1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.650e-18
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGT 596
            +GIITPY+ Q   L +  +F   L T+     + I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRA+  + ++GN  AL +   W  L+ + K +   ++    P +  ++ L  +FS PR L             + +  PR  S  M+    +  P    D+S T
Sbjct:  771 IGIITPYEGQRSYLVQYMQFSGSLHTK--LYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEG---PLNNLRESL-MQFSKPRKL-------------VNTINPRFMSTAMYDAREALIPGSAYDRSNT 930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.690e-18
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQREFESVLRTE-EGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYSPSQGKAS 491
            +GIITPY+ Q   +    +   +   E  + I + +VD+FQG+E+D II+SCVR++ + G+GF+ D RR+NVALTRAR  L ++GNA  L +   W +LI+  K +N  ++  + +L +       PK+  G   L  P Q   S
Sbjct:  859 IGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGSLANLKQSPVILQKPKKLYGQGKLPIPGQNSNS 1003

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_HUMAN (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.068e-17
Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 3

Query:   69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSL---------PKDFTKDLLP------------KEFSGPRGLYS-PSQGKASNMR-------GLRSAGPRH 527
            +GIITPY+ Q   L +  +F   L T+   +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR  + ++GN  AL +   W  L+   K +   ++  +++L         P+     + P            +E   P  +Y   SQG+ S+M        G+ SAGP H
Sbjct:  801 IGIITPYEGQRSYLVQYMQFSGSLHTKL-YQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSH 986

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067JL69_JATCU	2.765e-114	74.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9H754_POPTR	5.575e-113	72.62	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V7AP63_PHAVU	6.635e-113	74.40	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
B9RJG9_RICCO	1.127e-112	73.02	Splicing endonuclease positive effector sen1, puta...	[more]
A0A068TXP0_COFCA	1.537e-112	75.60	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
K7MEG5_SOYBN	3.747e-112	72.91	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
K7KZI7_SOYBN	4.572e-112	73.71	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2S4L8_GLYSO	5.581e-112	72.91	Putative ATP-dependent helicase C29A10.10c OS=Glyc...	[more]
A0A0B2P1B1_GLYSO	1.485e-111	73.31	Putative ATP-dependent helicase C29A10.10c OS=Glyc...	[more]
A0A0A0L3B2_CUCSA	1.357e-110	70.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
YGSA_SCHPO	1.345e-24	38.29	Uncharacterized ATP-dependent helicase C29A10.10c ...	[more]
SEN1_YEAST	1.569e-22	47.22	Helicase SEN1 OS=Saccharomyces cerevisiae (strain ...	[more]
SEN1_SCHPO	1.686e-21	49.07	Helicase sen1 OS=Schizosaccharomyces pombe (strain...	[more]
MAA3_ARATH	1.848e-19	40.63	Probable helicase MAGATAMA 3 OS=Arabidopsis thalia...	[more]
Y4399_DICDI	6.934e-19	47.52	Probable helicase DDB_G0274399 OS=Dictyostelium di...	[more]
RENT1_NEUCR	7.631e-19	34.97	Regulator of nonsense transcripts 1 homolog OS=Neu...	[more]
RENT1_MOUSE	7.161e-18	41.48	Regulator of nonsense transcripts 1 OS=Mus musculu...	[more]
RENT1_TAKRU	7.650e-18	35.20	Putative regulator of nonsense transcripts 1 OS=Ta...	[more]
RENT1_DICDI	7.690e-18	37.24	Regulator of nonsense transcripts 1 OS=Dictyosteli...	[more]
RENT1_HUMAN	1.068e-17	35.29	Regulator of nonsense transcripts 1 OS=Homo sapien...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13087	AAA_12	coord: 6..105 e-value: 2.8E-32 score: 111.8
None	No IPR available	PANTHER	PTHR10887:SF359	HELICASE SEN1	coord: 1..249
None	No IPR available	PANTHER	PTHR10887	DNA2/NAM7 HELICASE FAMILY	coord: 1..249
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 44..108 e-value: 5.3E-6 score: 25.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..134

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bp
TATTTTGTTTGCGCTTATATGAGCATCTACAGAGAACTATAAAATCTTTG
GGTGTGCCAAAAATCACAGTTGGTATAATAACACCATACAAGCTGCAATT
AAAATGCCTACAACGTGAGTTTGAGAGTGTTCTAAGGACAGAGGAAGGGA
AGAGGGATATCTATATTAATACTGTAGATGCTTTCCAGGGCCAGGAGCGT
GATGTTATTATTATGTCTTGTGTCCGTGCCTCAAGTCATGGGGTGGGCTT
TGTTGCAGATATTCGACGAATGAATGTTGCTCTTACTCGTGCTAGAAGGG
CTTTGTGGGTTATGGGTAATGCCAGTGCTCTGGTGCAATCAGATGACTGG
GCAGCCTTAATTGCTGATGCCAAAGCTAGGAATTGTTATATGGACATGGA
TTCTCTCCCCAAGGACTTCACAAAAGACTTGCTCCCCAAAGAATTTTCAG
GGCCAAGGGGACTTTACTCTCCATCACAGGGTAAGGCTTCTAATATGAGA
GGTTTAAGGTCTGCTGGACCAAGACATAGATCACTTGATATGCACATGGA
ATCCAGGTCAGGAACACCATCAGAGGATGAAGATAAGTCAGGCACAACTG
TAATTTCTAGGAATGGGAATTATCGGCCATTTAAGTCGCCACTGGATACT
TTTTTGGATGATTTTCATCCGTCAGGTGACAAATCTAGAGAGGCCTGGCA
ATATGGTATACTGAAGAAGCAAAATTCTGCTGGTACAATGGGGAAAAGAG
AGTCCTAGGCATTGGTTGTTGTCTACGAACTGTTTTGGCTCATGGCGGTC
CGTGGAGCAGAACTTTATTTATAATCCTTGCATTGAAATTTATGGAGCTC
TTAGCTCCATGAGTATTGAAACAATTTGTTGGAAGTTGGTGCCAGACTTG
TGTCTGATAATTGCCCTAAGATGAACAAGTTGAGAGGGATTTGCATGGGT
CACCAGTGAACTTTTGCCAGTCTGCCATGTTGATTCCTGCTAGGAAGTGG
ATGATCTGGGGGGTAGGATGTATGAGATCAAACCCTAGATCCACCCAGAC
AGGCTTCGAAGGAGTTGAATGCTGGCATTAAGAGTTGTGCCGCCCTACAA
TATCCCTTTGCTTGATAATTGATTGTTGCAATCTGCTATTACTTGGATGA
AGTCTTTAATCGATACAGTTGGGCAGTCATTTCAAATTCTGGTGCTCTTT
GACTTTTGTCCTTTTCCACAATACACTGAATGCATGGCCGACTCTTCAGT
TTGGGGATGTGAATTCTTTTGGATCTGTCAAATTTGAAGTTACATTCATC
AAATTTACAAATGCTTGCAAAATGTCAGAGGACGAGTAGCGATTCTTGAG
CGGGTGTGCTTTGCAGAATCCTAAGAATCAACCTCTATCAAAGTTGCCGT
ATATATTCTTTGAACATGGAGATGCACTTCGGTGATAACTTTTTAGTTCT
GCAGGATACGGGTTGGTTAACCAAGTATTCTTTGCTTTTGTTCTTTATGT
TAATTTTCCTTGGTTCTTTAAACCAAAAGACTTGGATAGAAATAGGACAC
ACCTCCAAAATTCTGTATAGAGAAGTAAGACTCCTAAAAGGGTACAGAAT
TGTGCGAGGAACTCTCATCTAGCTGACTTTGTGTATACAGCTTCAGGTGG
AACCAAAGAATTCTTTCTCAGCTGCGAAAAACCTCAGCTGCTGTTTTTTT
TTTTTTTTAAACTTGAAAACCATCAAATAATGGCCCAAGGTTTTAAACTA
TACTATTTGTTTTATTTTCCTATAATGAGATGTACTTTTCCTCAGATTGC
CATTACTTAAAAGTAATGCGGGGGATACAATTTATGTAGCGATGAACATA
TCCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Search form

g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

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