g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011991
Unique Nameg.arboreum_cottongen_reftransV1_0011991
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1854
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0011991:42..1854 .
Chr3:91493873..91495900 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067JL69_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09856 PE=4 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 2.765e-114
Identity = 187/251 (74.50%), Postives = 213/251 (84.86%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCL+LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNAS+L+QSDDWAALI DAKARNCYMDMDSLPK+F          GP+G  S      SN RG R +GPRHR++D HMESRSGTPSED+D SG  VISRNG+YRPFK  LD  LDDF  +GDKSR+AWQYGI KKQ+S+G +GKR+S
Sbjct: 1100 FCLQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFSAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNASSLIQSDDWAALITDAKARNCYMDMDSLPKEFFVS------KGPQGKGS------SNTRGSRLSGPRHRAMDKHMESRSGTPSEDDDSSGPPVISRNGHYRPFKPLLDNSLDDFDQAGDKSRDAWQYGIQKKQSSSGIVGKRDS 1337          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9H754_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16630g PE=4 SV=2)

HSP 1 Score: 379.407 bits (973), Expect = 5.575e-113
Identity = 183/252 (72.62%), Postives = 214/252 (84.92%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCL+LYEHLQ+++KSLG+ +ITVGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRA+RALWVMGNA++LVQSDDW+AL+ADAKARNCYM+MDSLPKDF              +   + GK +SN+RGLR  GPRHRS DMHMESRSGTPSED++ SG +VISRNG++ PFK P+D  LDDF  SGD+SR+AWQYGI KKQ S+  +GKR S
Sbjct: 1115 FCLQLYEHLQKSLKSLGMGRITVGIITPYKLQLKCLQQEFSAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNATSLVQSDDWSALVADAKARNCYMNMDSLPKDFF-------------VLKGTLGKGSSNVRGLRLGGPRHRSFDMHMESRSGTPSEDDENSGASVISRNGSFGPFKPPMDNSLDDFDQSGDRSRDAWQYGIQKKQGSSAVVGKRGS 1352          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V7AP63_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G130800g PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 6.635e-113
Identity = 186/250 (74.40%), Postives = 212/250 (84.80%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQS+DWAALI DAK+R CYMDMDSLPKDF   L+ K   GP  +Y+     +SNMRG+RSAGPR+RS+DMHMESRSG PSED++  G  + SRNGN+R  +  ++   DDF   GDKSR++WQYGI KKQNS+G MGKR+
Sbjct: 1158 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSEDWAALINDAKSRKCYMDMDSLPKDF---LVSK---GP--VYTSLPKPSSNMRGMRSAGPRYRSMDMHMESRSGAPSEDDENMGAPIGSRNGNHRQSRFSMENSFDDFDHGGDKSRDSWQYGIQKKQNSSGPMGKRD 1398          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9RJG9_RICCO (Splicing endonuclease positive effector sen1, putative OS=Ricinus communis GN=RCOM_1034260 PE=4 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.127e-112
Identity = 184/252 (73.02%), Postives = 212/252 (84.13%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FC +LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+H VGFVADIRRMNVALTRARRALWVMGNA++LV+SDDWAALI DAKARNCYMDM+SLPK+F              +   +QGK +SN RG R  GPRHRS+D+HME+RSGTPSED+D SG  VISRNGNYRPFK  +D  LDDF  SGDKSR+AWQYGI KKQ+S+G +GKRES
Sbjct: 1115 FCFQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFAAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHSVGFVADIRRMNVALTRARRALWVMGNANSLVKSDDWAALIDDAKARNCYMDMESLPKEFF-------------VSKGNQGKGSSNTRGSRLGGPRHRSMDLHMEARSGTPSEDDDSSGAPVISRNGNYRPFKPLMDNSLDDFDQSGDKSRDAWQYGIQKKQSSSGFVGKRES 1352          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A068TXP0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034514001 PE=4 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.537e-112
Identity = 189/250 (75.60%), Postives = 210/250 (84.00%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREFE +L +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+ALV+SDDWAALI DAKARNCYMDMDSLPKDF   +LPK  S P   Y   Q K  + RG+R+ G RHR  D+HMESRSGTPSED++KS T+ I RNG+YR  K P++  LDDF  S DKSR+AWQYG+ KK +SAG MGKRE
Sbjct: 1130 FCLRLYEHLQKTAKSLGVAKVTVGIITPYKLQLKCLQREFEDILNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALVKSDDWAALIKDAKARNCYMDMDSLPKDF---VLPK--SSP---YPSYQAKNPSNRGMRT-GLRHRPYDVHMESRSGTPSEDDEKSNTSSILRNGSYRSLKLPVENSLDDFDQSTDKSRDAWQYGVQKKHHSAGAMGKRE 1369          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7MEG5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.747e-112
Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P        +Y+   GK +SNMRG+RS GPR+RS+DMHMESR G PSED++  G  V SRNGN+R  +  ++  LDD    GDKSR+AWQYGI KK NS+GTMGKR+
Sbjct: 1145 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1386          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7KZI7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 4.572e-112
Identity = 185/251 (73.71%), Postives = 209/251 (83.27%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P   S P        GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++  G  V SRNGN R  +  ++  LDDF   GDKSR+AWQYGI KKQNS+G+MGKR+
Sbjct: 1146 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1387          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2S4L8_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_020716 PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 5.581e-112
Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P        +Y+   GK +SNMRG+RS GPR+RS+DMHMESR G PSED++  G  V SRNGN+R  +  ++  LDD    GDKSR+AWQYGI KK NS+GTMGKR+
Sbjct: 1194 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1435          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2P1B1_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_009604 PE=4 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.485e-111
Identity = 184/251 (73.31%), Postives = 209/251 (83.27%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF     P   S P        GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++  G  V SRNGN R  +  ++  LDDF   GDKSR+AWQYGI KKQNS+G+MGKR+
Sbjct: 1147 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1388          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0A0L3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G378760 PE=4 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.357e-110
Identity = 180/256 (70.31%), Postives = 210/256 (82.03%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDF------TKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLR+YEHLQ+T+KS G+ K++VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI DAKARNCYMDM+SLPKDF      T+  LP + S             SN RGLRSA PRHR+LD+H+ESRSGTPSED++KS + VI+RNGNYRP K+ ++   +D   SGDK R+ WQYG+ K+Q S GT+GKR+
Sbjct: 1088 FCLRMYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALITDAKARNCYMDMESLPKDFLGQKGSTQSTLPGKNS-------------SNTRGLRSALPRHRTLDIHVESRSGTPSEDDEKSNSAVITRNGNYRPSKAAVENSSEDLDQSGDKLRDTWQYGMQKRQGSTGTVGKRD 1329          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.124e-14
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGK------RDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            E L   +   GV    +G+IT Y+ Q     R F       +G        ++ I +VDAFQG+E+D II++CVR++   G+GF++D RR+NVA+TRA+  L ++GNA  L + D W  LI   K++
Sbjct:  748 EKLVSKLIKAGVQPHQIGVITSYEGQ-----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.448e-12
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS--------SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLP--KDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAG 518
            ++ E ++R   +  V +  +G+ITPY+ Q+  ++   + +  TE     + + +V+ FQGQE+ VII+S VR++        ++ +GF+++ RR NVA+TRA   L ++GN   + +  +W  L+      N Y     LP  ++F ++   +E S   G   P + + +N   L + G
Sbjct:  690 KVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE-----VKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGC-GLPEQEEFVEEPFKQEGSS-NGPQYPPEAEWNNSGELNNGG 861          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_CHICK (Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.799e-12
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   15 LYEHLQRTIKSLG---VPKIT---VGIITPYKLQLKCLQREFES---VLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            + ++LQ+ ++S G    P I+   +GII+PY+ Q++ ++    S   VLR       + + +V+ FQGQER VI++S VR+ S  +        GF+ + +R+NVALTRA+  L V+GNA+ L +   W   +   +    Y
Sbjct:  800 VVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.009e-12
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   66 TVGIITPYKLQLK----CLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            +VG+I+PY+ Q++    C+ +  +  LR  +  +D+ + +V+ FQGQER VI++S VR+S   V        GF+ + +R NVA+TRA+  L V+GN   L    DW   +   K    Y
Sbjct:  826 SVGVISPYRKQVEKIRYCITK-LDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: DNA2_XENLA (DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.066e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VG-FVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDM 398
            +L  HL +     G     +GII PY+ QLK +   F S+         + +NTVD +QG+++ VII+S VR++  G +G  + D RR+NVALTRA+  L ++G    L + D    LI + K  N   D+
Sbjct:  918 KLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-----SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDL 1043          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067JL69_JATCU2.765e-11474.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9H754_POPTR5.575e-11372.62Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7AP63_PHAVU6.635e-11374.40Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9RJG9_RICCO1.127e-11273.02Splicing endonuclease positive effector sen1, puta... [more]
A0A068TXP0_COFCA1.537e-11275.60Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
K7MEG5_SOYBN3.747e-11272.91Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KZI7_SOYBN4.572e-11273.71Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2S4L8_GLYSO5.581e-11272.91Putative ATP-dependent helicase C29A10.10c OS=Glyc... [more]
A0A0B2P1B1_GLYSO1.485e-11173.31Putative ATP-dependent helicase C29A10.10c OS=Glyc... [more]
A0A0A0L3B2_CUCSA1.357e-11070.31Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RENT1_CAEEL2.124e-1437.80Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
SDE3_ARATH1.448e-1227.93Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
MOV10_CHICK1.799e-1233.10Putative helicase MOV-10 OS=Gallus gallus GN=MOV10... [more]
MOV10_BOVIN2.009e-1235.00Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE... [more]
DNA2_XENLA2.066e-1235.88DNA replication ATP-dependent helicase/nuclease DN... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13087AAA_12coord: 6..105
e-value: 2.8E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR10887:SF359HELICASE SEN1coord: 1..249
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 1..249
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 44..108
e-value: 5.3E-6
score: 25.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..134

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bp
TATTTTGTTTGCGCTTATATGAGCATCTACAGAGAACTATAAAATCTTTG
GGTGTGCCAAAAATCACAGTTGGTATAATAACACCATACAAGCTGCAATT
AAAATGCCTACAACGTGAGTTTGAGAGTGTTCTAAGGACAGAGGAAGGGA
AGAGGGATATCTATATTAATACTGTAGATGCTTTCCAGGGCCAGGAGCGT
GATGTTATTATTATGTCTTGTGTCCGTGCCTCAAGTCATGGGGTGGGCTT
TGTTGCAGATATTCGACGAATGAATGTTGCTCTTACTCGTGCTAGAAGGG
CTTTGTGGGTTATGGGTAATGCCAGTGCTCTGGTGCAATCAGATGACTGG
GCAGCCTTAATTGCTGATGCCAAAGCTAGGAATTGTTATATGGACATGGA
TTCTCTCCCCAAGGACTTCACAAAAGACTTGCTCCCCAAAGAATTTTCAG
GGCCAAGGGGACTTTACTCTCCATCACAGGGTAAGGCTTCTAATATGAGA
GGTTTAAGGTCTGCTGGACCAAGACATAGATCACTTGATATGCACATGGA
ATCCAGGTCAGGAACACCATCAGAGGATGAAGATAAGTCAGGCACAACTG
TAATTTCTAGGAATGGGAATTATCGGCCATTTAAGTCGCCACTGGATACT
TTTTTGGATGATTTTCATCCGTCAGGTGACAAATCTAGAGAGGCCTGGCA
ATATGGTATACTGAAGAAGCAAAATTCTGCTGGTACAATGGGGAAAAGAG
AGTCCTAGGCATTGGTTGTTGTCTACGAACTGTTTTGGCTCATGGCGGTC
CGTGGAGCAGAACTTTATTTATAATCCTTGCATTGAAATTTATGGAGCTC
TTAGCTCCATGAGTATTGAAACAATTTGTTGGAAGTTGGTGCCAGACTTG
TGTCTGATAATTGCCCTAAGATGAACAAGTTGAGAGGGATTTGCATGGGT
CACCAGTGAACTTTTGCCAGTCTGCCATGTTGATTCCTGCTAGGAAGTGG
ATGATCTGGGGGGTAGGATGTATGAGATCAAACCCTAGATCCACCCAGAC
AGGCTTCGAAGGAGTTGAATGCTGGCATTAAGAGTTGTGCCGCCCTACAA
TATCCCTTTGCTTGATAATTGATTGTTGCAATCTGCTATTACTTGGATGA
AGTCTTTAATCGATACAGTTGGGCAGTCATTTCAAATTCTGGTGCTCTTT
GACTTTTGTCCTTTTCCACAATACACTGAATGCATGGCCGACTCTTCAGT
TTGGGGATGTGAATTCTTTTGGATCTGTCAAATTTGAAGTTACATTCATC
AAATTTACAAATGCTTGCAAAATGTCAGAGGACGAGTAGCGATTCTTGAG
CGGGTGTGCTTTGCAGAATCCTAAGAATCAACCTCTATCAAAGTTGCCGT
ATATATTCTTTGAACATGGAGATGCACTTCGGTGATAACTTTTTAGTTCT
GCAGGATACGGGTTGGTTAACCAAGTATTCTTTGCTTTTGTTCTTTATGT
TAATTTTCCTTGGTTCTTTAAACCAAAAGACTTGGATAGAAATAGGACAC
ACCTCCAAAATTCTGTATAGAGAAGTAAGACTCCTAAAAGGGTACAGAAT
TGTGCGAGGAACTCTCATCTAGCTGACTTTGTGTATACAGCTTCAGGTGG
AACCAAAGAATTCTTTCTCAGCTGCGAAAAACCTCAGCTGCTGTTTTTTT
TTTTTTTTAAACTTGAAAACCATCAAATAATGGCCCAAGGTTTTAAACTA
TACTATTTGTTTTATTTTCCTATAATGAGATGTACTTTTCCTCAGATTGC
CATTACTTAAAAGTAATGCGGGGGATACAATTTATGTAGCGATGAACATA
TCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase