g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067JL69_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09856 PE=4 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 2.765e-114 Identity = 187/251 (74.50%), Postives = 213/251 (84.86%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCL+LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNAS+L+QSDDWAALI DAKARNCYMDMDSLPK+F GP+G S SN RG R +GPRHR++D HMESRSGTPSED+D SG VISRNG+YRPFK LD LDDF +GDKSR+AWQYGI KKQ+S+G +GKR+S Sbjct: 1100 FCLQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFSAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNASSLIQSDDWAALITDAKARNCYMDMDSLPKEFFVS------KGPQGKGS------SNTRGSRLSGPRHRAMDKHMESRSGTPSEDDDSSGPPVISRNGHYRPFKPLLDNSLDDFDQAGDKSRDAWQYGIQKKQSSSGIVGKRDS 1337
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9H754_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16630g PE=4 SV=2) HSP 1 Score: 379.407 bits (973), Expect = 5.575e-113 Identity = 183/252 (72.62%), Postives = 214/252 (84.92%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCL+LYEHLQ+++KSLG+ +ITVGIITPYKLQLKCLQ+EF +VL++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRA+RALWVMGNA++LVQSDDW+AL+ADAKARNCYM+MDSLPKDF + + GK +SN+RGLR GPRHRS DMHMESRSGTPSED++ SG +VISRNG++ PFK P+D LDDF SGD+SR+AWQYGI KKQ S+ +GKR S Sbjct: 1115 FCLQLYEHLQKSLKSLGMGRITVGIITPYKLQLKCLQQEFSAVLKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNATSLVQSDDWSALVADAKARNCYMNMDSLPKDFF-------------VLKGTLGKGSSNVRGLRLGGPRHRSFDMHMESRSGTPSEDDENSGASVISRNGSFGPFKPPMDNSLDDFDQSGDRSRDAWQYGIQKKQGSSAVVGKRGS 1352
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: V7AP63_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G130800g PE=4 SV=1) HSP 1 Score: 379.793 bits (974), Expect = 6.635e-113 Identity = 186/250 (74.40%), Postives = 212/250 (84.80%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQS+DWAALI DAK+R CYMDMDSLPKDF L+ K GP +Y+ +SNMRG+RSAGPR+RS+DMHMESRSG PSED++ G + SRNGN+R + ++ DDF GDKSR++WQYGI KKQNS+G MGKR+ Sbjct: 1158 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSEDWAALINDAKSRKCYMDMDSLPKDF---LVSK---GP--VYTSLPKPSSNMRGMRSAGPRYRSMDMHMESRSGAPSEDDENMGAPIGSRNGNHRQSRFSMENSFDDFDHGGDKSRDSWQYGIQKKQNSSGPMGKRD 1398
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: B9RJG9_RICCO (Splicing endonuclease positive effector sen1, putative OS=Ricinus communis GN=RCOM_1034260 PE=4 SV=1) HSP 1 Score: 378.637 bits (971), Expect = 1.127e-112 Identity = 184/252 (73.02%), Postives = 212/252 (84.13%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FC +LYEHLQ+T+KSLG+ +I+VGIITPYKLQLKCLQ EF ++L++EEGK DIYINTVDAFQGQERDVIIMSCVRAS+H VGFVADIRRMNVALTRARRALWVMGNA++LV+SDDWAALI DAKARNCYMDM+SLPK+F + +QGK +SN RG R GPRHRS+D+HME+RSGTPSED+D SG VISRNGNYRPFK +D LDDF SGDKSR+AWQYGI KKQ+S+G +GKRES Sbjct: 1115 FCFQLYEHLQKTLKSLGLGRISVGIITPYKLQLKCLQHEFAAILKSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHSVGFVADIRRMNVALTRARRALWVMGNANSLVKSDDWAALIDDAKARNCYMDMESLPKEFF-------------VSKGNQGKGSSNTRGSRLGGPRHRSMDLHMEARSGTPSEDDDSSGAPVISRNGNYRPFKPLMDNSLDDFDQSGDKSRDAWQYGIQKKQSSSGFVGKRES 1352
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A068TXP0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034514001 PE=4 SV=1) HSP 1 Score: 378.637 bits (971), Expect = 1.537e-112 Identity = 189/250 (75.60%), Postives = 210/250 (84.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEHLQ+T KSLGV K+TVGIITPYKLQLKCLQREFE +L +EEGK DIYINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+ALV+SDDWAALI DAKARNCYMDMDSLPKDF +LPK S P Y Q K + RG+R+ G RHR D+HMESRSGTPSED++KS T+ I RNG+YR K P++ LDDF S DKSR+AWQYG+ KK +SAG MGKRE Sbjct: 1130 FCLRLYEHLQKTAKSLGVAKVTVGIITPYKLQLKCLQREFEDILNSEEGK-DIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALVKSDDWAALIKDAKARNCYMDMDSLPKDF---VLPK--SSP---YPSYQAKNPSNRGMRT-GLRHRPYDVHMESRSGTPSEDDEKSNTSSILRNGSYRSLKLPVENSLDDFDQSTDKSRDAWQYGVQKKHHSAGAMGKRE 1369
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7MEG5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 3.747e-112 Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF P +Y+ GK +SNMRG+RS GPR+RS+DMHMESR G PSED++ G V SRNGN+R + ++ LDD GDKSR+AWQYGI KK NS+GTMGKR+ Sbjct: 1145 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1386
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: K7KZI7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 4.572e-112 Identity = 185/251 (73.71%), Postives = 209/251 (83.27%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLGV KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF P S P GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++ G V SRNGN R + ++ LDDF GDKSR+AWQYGI KKQNS+G+MGKR+ Sbjct: 1146 FCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1387
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2S4L8_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_020716 PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 5.581e-112 Identity = 183/251 (72.91%), Postives = 209/251 (83.27%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF P +Y+ GK +SNMRG+RS GPR+RS+DMHMESR G PSED++ G V SRNGN+R + ++ LDD GDKSR+AWQYGI KK NS+GTMGKR+ Sbjct: 1194 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAP--------VYTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEDDENMGAPVSSRNGNHRQLRYSMENSLDDVEHGGDKSRDAWQYGIQKKHNSSGTMGKRD 1435
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B2P1B1_GLYSO (Putative ATP-dependent helicase C29A10.10c OS=Glycine soja GN=glysoja_009604 PE=4 SV=1) HSP 1 Score: 375.941 bits (964), Expect = 1.485e-111 Identity = 184/251 (73.31%), Postives = 209/251 (83.27%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLRLYEH+Q+T+KSLG+ KITVGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QS+DWAALI DAK+RNCYMDMDSLPKDF P S P GK +SNMRG+RS GPR+RS+DMHMESR G PSE+++ G V SRNGN R + ++ LDDF GDKSR+AWQYGI KKQNS+G+MGKR+ Sbjct: 1147 FCLRLYEHVQKTVKSLGLGKITVGIITPYKLQLKCLQREFDEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALLQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKAPSYTSLP--------GKPSSNMRGMRSGGPRYRSMDMHMESRLGPPSEEDENMGAPVSSRNGNLRQSRYSMENSLDDFEHGGDKSRDAWQYGIQKKQNSSGSMGKRD 1388
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0A0L3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G378760 PE=4 SV=1) HSP 1 Score: 372.474 bits (955), Expect = 1.357e-110 Identity = 180/256 (70.31%), Postives = 210/256 (82.03%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDF------TKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLR+YEHLQ+T+KS G+ K++VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI DAKARNCYMDM+SLPKDF T+ LP + S SN RGLRSA PRHR+LD+H+ESRSGTPSED++KS + VI+RNGNYRP K+ ++ +D SGDK R+ WQYG+ K+Q S GT+GKR+ Sbjct: 1088 FCLRMYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALITDAKARNCYMDMESLPKDFLGQKGSTQSTLPGKNS-------------SNTRGLRSALPRHRTLDIHVESRSGTPSEDDEKSNSAVITRNGNYRPSKAAVENSSEDLDQSGDKLRDTWQYGMQKRQGSTGTVGKRD 1329
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.862e-17 Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREF--ESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYS 470 E L GV +G+ITPY+ Q + LR ++ ++I + +VD+FQG+E+D II+SCVR++ H G+GF+ D RR+NVALTRAR + ++GN L + W L+ K C ++ +++L + +F PR +Y+ Sbjct: 794 EKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLR-QQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMV------QFQKPRKIYN 941
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_MOUSE (Probable helicase senataxin OS=Mus musculus GN=Setx PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.586e-17 Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 +GIIT YK Q +Q++ E + K ++TVDAFQG+++D II++CVRAS+ +GF+A ++R+NV +TRA+ +L+++G+ L+++ W LI DA+ R Sbjct: 2318 IGIITHYKAQKTMIQKDLEKEF---DKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKR 2420
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.847e-17 Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKA 377 E + +K L KI +ITPY Q++ L+R FE E DI +NTVD FQG+E + I++S VR + GF+ D+RR+NVA+TRA+R L ++GN + L Q + +I AK+ Sbjct: 541 EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFE------EHNIDIEVNTVDGFQGRENEAIVISFVR--TKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKS 651
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 1.189e-16 Identity = 41/106 (38.68%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 +GIIT YK Q +Q++ + + K ++TVDAFQG+++D +I++CVRA+S +GF+A ++R+NV +TRA+ +L+++G+ L+++ W LI DA+ R Sbjct: 2342 IGIITHYKAQKTMIQKDLDKEF---DRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKR 2444
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.378e-16 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASAL 332 EH++ ++S VP+ ++G+I+PY Q+ L++ ++ E DI I+TVD FQG+E+DVII+S VR++ VGF+ + RR+NVA+TR RR L V+GN L Sbjct: 554 EHIE-NLRSFNVPENSIGVISPYNAQVSHLKK----LIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf1 PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 2.861e-16 Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIY----INTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKE 443 +GI+TPY Q + + ++ ++D+Y + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+ + V+GN L + W + K + ++ ++SL K F+ L P + Sbjct: 718 IGIVTPYDGQRSYIVQYMQN---NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTLTPPQ 845
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 3.639e-16 Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 51 GVPKITVGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD 395 G+ +GIITPY+ Q L + +++ L + ++I I +VDAFQG+E+D+IIMSCVR++ G+GF+ D RR+NVALTRA+ + ++GN L + W L+ K R ++ Sbjct: 764 GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRL-YQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE 880
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_MOUSE (Protein ZGRF1 OS=Mus musculus GN=Zgrf1 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 6.835e-16 Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR--------NCYMDMDSLPKDF 419 F L+L + L + GV +G+IT YK Q+ + +V + + ++TVDAFQG E+++ I+SCVR + VGF+ +RMNVALTR RR L ++G+ S L ++ W +I + R C +D L KD+ Sbjct: 1701 FTLKLIQSLMAS----GVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVR--TRQVGFIDSEKRMNVALTRGRRHLLIVGSLSCLRKNRLWGRVIQHCEGREDGLQHASQCEPQLDHLLKDY 1841
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_HUMAN (Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 1.407e-15 Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 F L+L +Q I S G+ +G+IT YK Q+ L +V + + ++TVDAFQG E+++II+SCVR + VGF+ +RMNVALTR +R L ++GN + L ++ W +I + R Sbjct: 1940 FTLKL---IQSLIAS-GIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVR--TRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGR 2059
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.428e-15 Identity = 67/244 (27.46%), Postives = 114/244 (46.72%), Query Frame = 3 Query: 6 CLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYIN----TVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILK 716 C R+ L R GV +G+ITPY+ Q + + + +D+YI +VDAFQG+E+D II+SCVRA+ +GF+ D RR+NV LTRA+ L ++GN +L ++ W L+ + + C ++ +D+L + + P+ PR P + ++ES G + +D +++S +G F + F+D+ S + E W + K Sbjct: 709 CERIITKLFRD----GVKPEQIGVITPYEGQRAYI---LQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLVRPQ----PRKTERPMNAQ------------------FNVESEMGDFPKFQDFDAQSMVSFSGQIGDFG---NAFVDNTELSSYINNEYWNFENFK 920 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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